RNA–Protein interactions for RNA: ENST00000515752.5

SDHA-218, Transcript of succinate dehydrogenase complex flavoprotein subunit A, humanhuman

TSL 5

Gene SDHA, Length 1,809 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDHA-218ENST00000515752 NISCHQ9Y2I1 1504 aa33.46■■■□□ 2.95
SDHA-218ENST00000515752 CCDC180Q9P1Z9 1646 aa28.95■■■□□ 2.23
SDHA-218ENST00000515752 ZCCHC6Q5VYS8 1495 aaKnown RBP28.18■■■□□ 2.1
SDHA-218ENST00000515752 DCAF1Q9Y4B6 1507 aa27.73■■■□□ 2.03
SDHA-218ENST00000515752 SHROOM4Q9ULL8 1493 aa27.53■■■□□ 2
SDHA-218ENST00000515752 DCAF8L2P0C7V8 631 aa27.52■■■□□ 2
SDHA-218ENST00000515752 MYO15BQ96JP2 1530 aa27.27■■□□□ 1.96
SDHA-218ENST00000515752 ABCC9O60706 1549 aa26.97■■□□□ 1.91
SDHA-218ENST00000515752 NACADO15069 1562 aa26.93■■□□□ 1.9
SDHA-218ENST00000515752 SUPT5HO00267 1087 aaKnown RBP26.76■■□□□ 1.88
SDHA-218ENST00000515752 SCRIBQ14160 1630 aa26.63■■□□□ 1.85
SDHA-218ENST00000515752 RB1CC1Q8TDY2 1594 aa26.57■■□□□ 1.84
SDHA-218ENST00000515752 RSF1Q96T23 1441 aaPredicted RBP26.13■■□□□ 1.77
SDHA-218ENST00000515752 CECR2Q9BXF3 1484 aa25.91■■□□□ 1.74
SDHA-218ENST00000515752 UNC13AQ9UPW8 1703 aa25.88■■□□□ 1.73
SDHA-218ENST00000515752 CHIC1Q5VXU3 224 aa25.87■■□□□ 1.73
SDHA-218ENST00000515752 BAZ1AQ9NRL2 1556 aaPredicted RBP25.83■■□□□ 1.73
SDHA-218ENST00000515752 MROH2BQ7Z745 1585 aa25.82■■□□□ 1.72
SDHA-218ENST00000515752 BICRAQ9NZM4 1560 aa25.68■■□□□ 1.7
SDHA-218ENST00000515752 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
SDHA-218ENST00000515752 WIZO95785 1651 aa25.59■■□□□ 1.69
SDHA-218ENST00000515752 PABPN1Q86U42 306 aaKnown RBP eCLIP25.54■■□□□ 1.68
SDHA-218ENST00000515752 TOP2AP11388 1531 aaKnown RBP25.41■■□□□ 1.66
SDHA-218ENST00000515752 PEG3Q9GZU2 1588 aa25.31■■□□□ 1.64
SDHA-218ENST00000515752 TRIM41Q8WV44 630 aa25.21■■□□□ 1.63
SDHA-218ENST00000515752 CCDC88BA6NC98 1476 aa25.16■■□□□ 1.62
SDHA-218ENST00000515752 SMARCA2P51531 1590 aa25.16■■□□□ 1.62
SDHA-218ENST00000515752 ATAD2BQ9ULI0 1458 aa25.11■■□□□ 1.61
SDHA-218ENST00000515752 EIF4G1Q04637 1599 aaKnown RBP25.08■■□□□ 1.6
SDHA-218ENST00000515752 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
SDHA-218ENST00000515752 NCAPD3P42695 1498 aa24.86■■□□□ 1.57
SDHA-218ENST00000515752 LOC105371045A0A1W2PR82 267 aa24.84■■□□□ 1.57
SDHA-218ENST00000515752 HMGXB3Q12766 1538 aa24.84■■□□□ 1.57
SDHA-218ENST00000515752 ABCC8Q09428 1581 aa24.7■■□□□ 1.54
SDHA-218ENST00000515752 FAM9AQ8IZU1 332 aaPredicted RBP24.66■■□□□ 1.54
SDHA-218ENST00000515752 WRNQ14191 1432 aaPredicted RBP eCLIP24.6■■□□□ 1.53
SDHA-218ENST00000515752 EEA1Q15075 1411 aa24.56■■□□□ 1.52
SDHA-218ENST00000515752 CFTRP13569 1480 aa24.42■■□□□ 1.5
SDHA-218ENST00000515752 CC2D2AQ9P2K1 1620 aa24.41■■□□□ 1.5
SDHA-218ENST00000515752 SYNJ1O43426 1573 aa24.39■■□□□ 1.49
SDHA-218ENST00000515752 SOGA1O94964 1423 aa24.38■■□□□ 1.49
SDHA-218ENST00000515752 CSRNP3Q8WYN3 585 aa24.35■■□□□ 1.49
SDHA-218ENST00000515752 TOP2BQ02880 1626 aa24.32■■□□□ 1.48
SDHA-218ENST00000515752 CADPSQ9ULU8 1353 aa24.26■■□□□ 1.47
SDHA-218ENST00000515752 BIVM-ERCC5R4GMW8 1640 aa24.26■■□□□ 1.47
SDHA-218ENST00000515752 EHMT2Q96KQ7 1210 aa24.24■■□□□ 1.47
SDHA-218ENST00000515752 RUSC2Q8N2Y8 1516 aa24.21■■□□□ 1.47
SDHA-218ENST00000515752 PCGF6Q9BYE7 350 aa24.21■■□□□ 1.47
SDHA-218ENST00000515752 TNIKQ9UKE5 1360 aa24.2■■□□□ 1.46
SDHA-218ENST00000515752 PRDM2Q13029 1718 aa24.2■■□□□ 1.46
SDHA-218ENST00000515752 TRIM26Q12899 539 aaPredicted RBP24.19■■□□□ 1.46
SDHA-218ENST00000515752 GOLGA3Q08378 1498 aa24.17■■□□□ 1.46
SDHA-218ENST00000515752 CEP164Q9UPV0 1460 aa24.14■■□□□ 1.46
SDHA-218ENST00000515752 CUX1P39880 1505 aa24.12■■□□□ 1.45
SDHA-218ENST00000515752 KIF21BO75037 1637 aa24.11■■□□□ 1.45
SDHA-218ENST00000515752 UBTFP17480 764 aaKnown RBP24.07■■□□□ 1.44
SDHA-218ENST00000515752 CEP162Q5TB80 1403 aa24.05■■□□□ 1.44
SDHA-218ENST00000515752 KIF27Q86VH2 1401 aa23.98■■□□□ 1.43
SDHA-218ENST00000515752 FANCD2Q9BXW9 1451 aa23.96■■□□□ 1.43
SDHA-218ENST00000515752 LAMC3Q9Y6N6 1575 aa23.92■■□□□ 1.42
SDHA-218ENST00000515752 ERICH3Q5RHP9 1530 aa23.91■■□□□ 1.42
SDHA-218ENST00000515752 HRCP23327 699 aa23.9■■□□□ 1.42
SDHA-218ENST00000515752 PRXQ9BXM0 1461 aa23.88■■□□□ 1.41
SDHA-218ENST00000515752 RAPGEF2Q9Y4G8 1499 aa23.87■■□□□ 1.41
SDHA-218ENST00000515752 FGD5Q6ZNL6 1462 aa23.81■■□□□ 1.4
SDHA-218ENST00000515752 DNMBPQ6XZF7 1577 aa23.8■■□□□ 1.4
SDHA-218ENST00000515752 CLIP1P30622 1438 aa23.79■■□□□ 1.4
SDHA-218ENST00000515752 NESP48681 1621 aa23.78■■□□□ 1.4
SDHA-218ENST00000515752 PDS5BQ9NTI5 1447 aa23.78■■□□□ 1.4
SDHA-218ENST00000515752 CUX2O14529 1486 aa23.76■■□□□ 1.39
SDHA-218ENST00000515752 TOPBP1Q92547 1522 aa23.73■■□□□ 1.39
SDHA-218ENST00000515752 IGF1RP08069 1367 aa23.69■■□□□ 1.38
SDHA-218ENST00000515752 VPS8Q8N3P4 1428 aa23.65■■□□□ 1.38
SDHA-218ENST00000515752 ABCA10Q8WWZ4 1543 aa23.65■■□□□ 1.38
SDHA-218ENST00000515752 POLA1P09884 1462 aaPredicted RBP23.64■■□□□ 1.38
SDHA-218ENST00000515752 CARMIL1Q5VZK9 1371 aa23.6■■□□□ 1.37
SDHA-218ENST00000515752 PPARGC1BQ86YN6 1023 aaKnown RBP23.59■■□□□ 1.37
SDHA-218ENST00000515752 DNAJC5BQ9UF47 199 aa23.59■■□□□ 1.37
SDHA-218ENST00000515752 URB2Q14146 1524 aaKnown RBP23.59■■□□□ 1.37
SDHA-218ENST00000515752 APLP2Q06481 763 aa23.54■■□□□ 1.36
SDHA-218ENST00000515752 RAD54L2Q9Y4B4 1467 aa23.53■■□□□ 1.36
SDHA-218ENST00000515752 ZEB1P37275 1124 aaPredicted RBP23.53■■□□□ 1.36
SDHA-218ENST00000515752 KIF21AQ7Z4S6 1674 aa23.46■■□□□ 1.35
SDHA-218ENST00000515752 CUL7Q14999 1698 aa23.45■■□□□ 1.34
SDHA-218ENST00000515752 RANGAP1P46060 587 aaPredicted RBP23.44■■□□□ 1.34
SDHA-218ENST00000515752 ARAP1Q96P48 1450 aa23.44■■□□□ 1.34
SDHA-218ENST00000515752 WDR97A6NE52 1622 aa23.43■■□□□ 1.34
SDHA-218ENST00000515752 MRC2Q9UBG0 1479 aa23.39■■□□□ 1.33
SDHA-218ENST00000515752 ARHGAP35Q9NRY4 1499 aa23.38■■□□□ 1.33
SDHA-218ENST00000515752 ABCA5Q8WWZ7 1642 aa23.36■■□□□ 1.33
SDHA-218ENST00000515752 GAPVD1Q14C86 1478 aa23.35■■□□□ 1.33
SDHA-218ENST00000515752 TTBK1Q5TCY1 1321 aaPredicted RBP23.32■■□□□ 1.32
SDHA-218ENST00000515752 TDRD9Q8NDG6 1382 aaKnown RBP23.31■■□□□ 1.32
SDHA-218ENST00000515752 TARBP1Q13395 1621 aaKnown RBP23.3■■□□□ 1.32
SDHA-218ENST00000515752 FHAD1B1AJZ9 1412 aa23.23■■□□□ 1.31
SDHA-218ENST00000515752 EFCAB5A4FU69 1503 aa23.23■■□□□ 1.31
SDHA-218ENST00000515752 WDR62O43379 1518 aa23.23■■□□□ 1.31
SDHA-218ENST00000515752 MAP3K1Q13233 1512 aa23.21■■□□□ 1.31
SDHA-218ENST00000515752 IFT140Q96RY7 1462 aa23.2■■□□□ 1.3
SDHA-218ENST00000515752 CTTNBP2Q8WZ74 1663 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms