RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 AEBP2Q6ZN18 517 aaPredicted RBP25.16■■□□□ 1.62
RTF1-206ENST00000560447 CHIC1Q5VXU3 224 aa24.03■■□□□ 1.44
RTF1-206ENST00000560447 SENP3Q9H4L4 574 aaPredicted RBP21.37■■□□□ 1.01
RTF1-206ENST00000560447 PHF23Q9BUL5 403 aaPredicted RBP21.13■□□□□ 0.97
RTF1-206ENST00000560447 NISCHQ9Y2I1 1504 aa21.08■□□□□ 0.96
RTF1-206ENST00000560447 FOXD1Q16676 465 aa19.93■□□□□ 0.78
RTF1-206ENST00000560447 PLPPR3Q6T4P5 718 aa19.23■□□□□ 0.67
RTF1-206ENST00000560447 PPP6R1Q9UPN7 881 aa18.78■□□□□ 0.6
RTF1-206ENST00000560447 ADRA2BP18089 450 aa18.68■□□□□ 0.58
RTF1-206ENST00000560447 PIAS4Q8N2W9 510 aaPredicted RBP18.6■□□□□ 0.57
RTF1-206ENST00000560447 MSH5O43196 834 aa18.55■□□□□ 0.56
RTF1-206ENST00000560447 CCDC180Q9P1Z9 1646 aa18.34■□□□□ 0.53
RTF1-206ENST00000560447 POTEDQ86YR6 584 aa17.86■□□□□ 0.45
RTF1-206ENST00000560447 ZCCHC6Q5VYS8 1495 aaKnown RBP17.82■□□□□ 0.44
RTF1-206ENST00000560447 DCAF1Q9Y4B6 1507 aa17.57■□□□□ 0.4
RTF1-206ENST00000560447 MYO15BQ96JP2 1530 aa17.24■□□□□ 0.35
RTF1-206ENST00000560447 SHROOM4Q9ULL8 1493 aa17.21■□□□□ 0.35
RTF1-206ENST00000560447 MAPK8IP2Q13387 824 aaPredicted RBP17.12■□□□□ 0.33
RTF1-206ENST00000560447 SCAF1Q9H7N4 1312 aaKnown RBP17.05■□□□□ 0.32
RTF1-206ENST00000560447 DMRT2Q9Y5R5 561 aa17.01■□□□□ 0.31
RTF1-206ENST00000560447 DCAF8L2P0C7V8 631 aa16.98■□□□□ 0.31
RTF1-206ENST00000560447 NACADO15069 1562 aa16.92■□□□□ 0.3
RTF1-206ENST00000560447 PPP4R3CPQ6ZMV5 832 aa16.88■□□□□ 0.29
RTF1-206ENST00000560447 SUPT5HO00267 1087 aaKnown RBP16.78■□□□□ 0.28
RTF1-206ENST00000560447 ABCC9O60706 1549 aa16.77■□□□□ 0.28
RTF1-206ENST00000560447 SCRIBQ14160 1630 aa16.71■□□□□ 0.27
RTF1-206ENST00000560447 RB1CC1Q8TDY2 1594 aa16.66■□□□□ 0.26
RTF1-206ENST00000560447 CNKSR2Q8WXI2 1034 aa16.54■□□□□ 0.24
RTF1-206ENST00000560447 HOXD11P31277 338 aaPredicted RBP16.47■□□□□ 0.23
RTF1-206ENST00000560447 RSF1Q96T23 1441 aaPredicted RBP16.45■□□□□ 0.22
RTF1-206ENST00000560447 RNF216Q9NWF9 866 aaPredicted RBP16.36■□□□□ 0.21
RTF1-206ENST00000560447 UNC13AQ9UPW8 1703 aa16.33■□□□□ 0.2
RTF1-206ENST00000560447 BAZ1AQ9NRL2 1556 aaPredicted RBP16.29■□□□□ 0.2
RTF1-206ENST00000560447 MROH2BQ7Z745 1585 aa16.23■□□□□ 0.19
RTF1-206ENST00000560447 NCBP3Q53F19 620 aaKnown RBP16.23■□□□□ 0.19
RTF1-206ENST00000560447 CECR2Q9BXF3 1484 aa16.22■□□□□ 0.19
RTF1-206ENST00000560447 DCAF8L1A6NGE4 600 aa16.14■□□□□ 0.17
RTF1-206ENST00000560447 SMARCA4P51532 1647 aa16.14■□□□□ 0.17
RTF1-206ENST00000560447 WIZO95785 1651 aa16.14■□□□□ 0.17
RTF1-206ENST00000560447 BICRAQ9NZM4 1560 aa16.09■□□□□ 0.17
RTF1-206ENST00000560447 NPM3O75607 178 aaKnown RBP16.07■□□□□ 0.16
RTF1-206ENST00000560447 TOP2AP11388 1531 aaKnown RBP16.06■□□□□ 0.16
RTF1-206ENST00000560447 PEG3Q9GZU2 1588 aa16■□□□□ 0.15
RTF1-206ENST00000560447 EIF4G1Q04637 1599 aaKnown RBP15.98■□□□□ 0.15
RTF1-206ENST00000560447 DNAJC5BQ9UF47 199 aa15.91■□□□□ 0.14
RTF1-206ENST00000560447 SMARCA2P51531 1590 aa15.9■□□□□ 0.14
RTF1-206ENST00000560447 RNF39Q9H2S5 420 aa15.89■□□□□ 0.13
RTF1-206ENST00000560447 KCNA4P22459 653 aa15.88■□□□□ 0.13
RTF1-206ENST00000560447 TRIM41Q8WV44 630 aa15.85■□□□□ 0.13
RTF1-206ENST00000560447 CCDC88BA6NC98 1476 aa15.82■□□□□ 0.12
RTF1-206ENST00000560447 CACNB1Q02641 598 aaPredicted RBP15.77■□□□□ 0.12
RTF1-206ENST00000560447 ATAD2BQ9ULI0 1458 aa15.72■□□□□ 0.11
RTF1-206ENST00000560447 PABPN1Q86U42 306 aaKnown RBP eCLIP15.71■□□□□ 0.11
RTF1-206ENST00000560447 BAZ1BQ9UIG0 1483 aaKnown RBP15.66■□□□□ 0.1
RTF1-206ENST00000560447 LOC105371045A0A1W2PR82 267 aa15.65■□□□□ 0.1
RTF1-206ENST00000560447 C1QBPQ07021 282 aaKnown RBP15.64■□□□□ 0.09
RTF1-206ENST00000560447 HMGXB3Q12766 1538 aa15.63■□□□□ 0.09
RTF1-206ENST00000560447 EEA1Q15075 1411 aa15.62■□□□□ 0.09
RTF1-206ENST00000560447 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.57■□□□□ 0.083e-10■■■■□ 26.4
RTF1-206ENST00000560447 ABCC8Q09428 1581 aa15.57■□□□□ 0.08
RTF1-206ENST00000560447 NCAPD3P42695 1498 aa15.56■□□□□ 0.08
RTF1-206ENST00000560447 WRNQ14191 1432 aaPredicted RBP eCLIP15.49■□□□□ 0.07
RTF1-206ENST00000560447 TRIM26Q12899 539 aaPredicted RBP15.45■□□□□ 0.06
RTF1-206ENST00000560447 FAM9AQ8IZU1 332 aaPredicted RBP15.43■□□□□ 0.06
RTF1-206ENST00000560447 PRDM2Q13029 1718 aa15.43■□□□□ 0.06
RTF1-206ENST00000560447 HRCP23327 699 aa15.41■□□□□ 0.06
RTF1-206ENST00000560447 BIVM-ERCC5R4GMW8 1640 aa15.41■□□□□ 0.06
RTF1-206ENST00000560447 SYNJ1O43426 1573 aa15.41■□□□□ 0.06
RTF1-206ENST00000560447 PCGF6Q9BYE7 350 aa15.4■□□□□ 0.06
RTF1-206ENST00000560447 TOP2BQ02880 1626 aa15.39■□□□□ 0.05
RTF1-206ENST00000560447 KIF21BO75037 1637 aa15.37■□□□□ 0.05
RTF1-206ENST00000560447 TNIKQ9UKE5 1360 aa15.36■□□□□ 0.05
RTF1-206ENST00000560447 U3KPZ7 1027 aaPredicted RBP15.35■□□□□ 0.05
RTF1-206ENST00000560447 SOGA1O94964 1423 aa15.34■□□□□ 0.05
RTF1-206ENST00000560447 GOLGA3Q08378 1498 aa15.33■□□□□ 0.05
RTF1-206ENST00000560447 SLC4A2P04920 1241 aa15.33■□□□□ 0.04
RTF1-206ENST00000560447 CSRNP3Q8WYN3 585 aa15.32■□□□□ 0.04
RTF1-206ENST00000560447 CFTRP13569 1480 aa15.31■□□□□ 0.04
RTF1-206ENST00000560447 CEP164Q9UPV0 1460 aa15.31■□□□□ 0.04
RTF1-206ENST00000560447 CEP162Q5TB80 1403 aa15.26■□□□□ 0.03
RTF1-206ENST00000560447 RUSC2Q8N2Y8 1516 aa15.23■□□□□ 0.03
RTF1-206ENST00000560447 CC2D2AQ9P2K1 1620 aa15.21■□□□□ 0.03
RTF1-206ENST00000560447 ERICH3Q5RHP9 1530 aa15.2■□□□□ 0.02
RTF1-206ENST00000560447 CUX1P39880 1505 aa15.17■□□□□ 0.02
RTF1-206ENST00000560447 ZEB1P37275 1124 aaPredicted RBP15.16■□□□□ 0.02
RTF1-206ENST00000560447 CADPSQ9ULU8 1353 aa15.14■□□□□ 0.01
RTF1-206ENST00000560447 PRXQ9BXM0 1461 aa15.1■□□□□ 0.01
RTF1-206ENST00000560447 KIF27Q86VH2 1401 aa15.09■□□□□ 0.01
RTF1-206ENST00000560447 UBTFP17480 764 aaKnown RBP15.08■□□□□ 0
RTF1-206ENST00000560447 EHMT2Q96KQ7 1210 aa15.07■□□□□ 0
RTF1-206ENST00000560447 SPINK5Q9NQ38 1064 aaPredicted RBP15.06■□□□□ 0
RTF1-206ENST00000560447 RAPGEF2Q9Y4G8 1499 aa15.05■□□□□ -0
RTF1-206ENST00000560447 CLIP1P30622 1438 aa15.04■□□□□ -0
RTF1-206ENST00000560447 LAMC3Q9Y6N6 1575 aa15.02□□□□□ -0.01
RTF1-206ENST00000560447 VPS8Q8N3P4 1428 aa15.01□□□□□ -0.01
RTF1-206ENST00000560447 DNMBPQ6XZF7 1577 aa14.99□□□□□ -0.01
RTF1-206ENST00000560447 SLC4A1APQ9BWU0 796 aaKnown RBP14.99□□□□□ -0.01
RTF1-206ENST00000560447 FANCD2Q9BXW9 1451 aa14.96□□□□□ -0.01
RTF1-206ENST00000560447 CAPN15O75808 1086 aa14.95□□□□□ -0.02
RTF1-206ENST00000560447 FGD5Q6ZNL6 1462 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 140.9 ms