Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
RAB40CQ96S21 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.28■□□□□ 0.52
RAB40CQ96S21 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RAB40CQ96S21 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAB40CQ96S21 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAB40CQ96S21 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
RAB40CQ96S21 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAB40CQ96S21 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RAB40CQ96S21 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAB40CQ96S21 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RAB40CQ96S21 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.28■□□□□ 0.52
RAB40CQ96S21 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RAB40CQ96S21 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
RAB40CQ96S21 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
RAB40CQ96S21 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RAB40CQ96S21 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RAB40CQ96S21 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
RAB40CQ96S21 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RAB40CQ96S21 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RAB40CQ96S21 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RAB40CQ96S21 RAP2CP1-202ENST00000605179 643 ntBASIC18.27■□□□□ 0.52
RAB40CQ96S21 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC18.27■□□□□ 0.52
RAB40CQ96S21 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.27■□□□□ 0.52
RAB40CQ96S21 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.27■□□□□ 0.52
RAB40CQ96S21 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.27■□□□□ 0.51
RAB40CQ96S21 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.27■□□□□ 0.51
RAB40CQ96S21 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
RAB40CQ96S21 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RAB40CQ96S21 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
RAB40CQ96S21 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RAB40CQ96S21 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RAB40CQ96S21 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RAB40CQ96S21 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
RAB40CQ96S21 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.26■□□□□ 0.51
RAB40CQ96S21 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RAB40CQ96S21 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
RAB40CQ96S21 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RAB40CQ96S21 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC18.26■□□□□ 0.51
RAB40CQ96S21 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
RAB40CQ96S21 CEP120-209ENST00000515110 606 ntTSL 3 BASIC18.26■□□□□ 0.51
RAB40CQ96S21 AC007029.1-201ENST00000604183 313 ntBASIC18.26■□□□□ 0.51
RAB40CQ96S21 AC022413.1-201ENST00000624602 984 ntBASIC18.26■□□□□ 0.51
RAB40CQ96S21 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RAB40CQ96S21 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RAB40CQ96S21 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.26■□□□□ 0.51
RAB40CQ96S21 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.26■□□□□ 0.51
RAB40CQ96S21 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RAB40CQ96S21 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RAB40CQ96S21 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RAB40CQ96S21 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RAB40CQ96S21 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RAB40CQ96S21 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
RAB40CQ96S21 AC026202.3-201ENST00000600805 1127 ntBASIC18.25■□□□□ 0.51
RAB40CQ96S21 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RAB40CQ96S21 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
RAB40CQ96S21 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
RAB40CQ96S21 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RAB40CQ96S21 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RAB40CQ96S21 AL022069.1-201ENST00000568025 1636 ntBASIC18.24■□□□□ 0.51
RAB40CQ96S21 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RAB40CQ96S21 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RAB40CQ96S21 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RAB40CQ96S21 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RAB40CQ96S21 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC18.24■□□□□ 0.51
RAB40CQ96S21 SSSCA1-AS1-201ENST00000567594 614 ntBASIC18.24■□□□□ 0.51
RAB40CQ96S21 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RAB40CQ96S21 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC18.24■□□□□ 0.51
RAB40CQ96S21 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.24■□□□□ 0.51
RAB40CQ96S21 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.24■□□□□ 0.51
RAB40CQ96S21 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
RAB40CQ96S21 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RAB40CQ96S21 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
RAB40CQ96S21 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RAB40CQ96S21 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RAB40CQ96S21 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RAB40CQ96S21 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RAB40CQ96S21 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RAB40CQ96S21 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RAB40CQ96S21 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RAB40CQ96S21 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RAB40CQ96S21 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.22■□□□□ 0.51
RAB40CQ96S21 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.22■□□□□ 0.51
RAB40CQ96S21 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RAB40CQ96S21 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RAB40CQ96S21 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.22■□□□□ 0.51
RAB40CQ96S21 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RAB40CQ96S21 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RAB40CQ96S21 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.22■□□□□ 0.51
RAB40CQ96S21 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RAB40CQ96S21 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RAB40CQ96S21 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.22■□□□□ 0.51
RAB40CQ96S21 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RAB40CQ96S21 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RAB40CQ96S21 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RAB40CQ96S21 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RAB40CQ96S21 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RAB40CQ96S21 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RAB40CQ96S21 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RAB40CQ96S21 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC18.21■□□□□ 0.51
RAB40CQ96S21 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms