RNA–Protein interactions for RNA: ENST00000345851.7

TRIM3-201, Transcript of tripartite motif containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM3, Length 2,879 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-201ENST00000345851 NISCHQ9Y2I1 1504 aa43.71■■■■■ 4.59
TRIM3-201ENST00000345851 CCDC180Q9P1Z9 1646 aa37.45■■■■□ 3.59
TRIM3-201ENST00000345851 SHROOM4Q9ULL8 1493 aa36.93■■■■□ 3.5
TRIM3-201ENST00000345851 DCAF8L2P0C7V8 631 aa36.88■■■■□ 3.49
TRIM3-201ENST00000345851 ZCCHC6Q5VYS8 1495 aaKnown RBP36.77■■■■□ 3.48
TRIM3-201ENST00000345851 HRCP23327 699 aa36.01■■■■□ 3.36
TRIM3-201ENST00000345851 SUPT5HO00267 1087 aaKnown RBP35.96■■■■□ 3.35
TRIM3-201ENST00000345851 ABCC9O60706 1549 aa35.77■■■■□ 3.32
TRIM3-201ENST00000345851 DCAF1Q9Y4B6 1507 aa35.71■■■■□ 3.31
TRIM3-201ENST00000345851 PCGF6Q9BYE7 350 aa35.5■■■■□ 3.27
TRIM3-201ENST00000345851 PPARGC1BQ86YN6 1023 aaKnown RBP35.44■■■■□ 3.26
TRIM3-201ENST00000345851 MYO15BQ96JP2 1530 aa35.42■■■■□ 3.26
TRIM3-201ENST00000345851 CHIC1Q5VXU3 224 aa35.2■■■■□ 3.23
TRIM3-201ENST00000345851 SCRIBQ14160 1630 aa35.19■■■■□ 3.22
TRIM3-201ENST00000345851 NACADO15069 1562 aa34.88■■■■□ 3.17
TRIM3-201ENST00000345851 RB1CC1Q8TDY2 1594 aa34.55■■■■□ 3.12
TRIM3-201ENST00000345851 LOC105371045A0A1W2PR82 267 aa34.48■■■■□ 3.11
TRIM3-201ENST00000345851 PELP1Q8IZL8 1130 aaKnown RBP34.36■■■■□ 3.09
TRIM3-201ENST00000345851 RSF1Q96T23 1441 aaPredicted RBP34.3■■■■□ 3.08
TRIM3-201ENST00000345851 CECR2Q9BXF3 1484 aa34.29■■■■□ 3.08
TRIM3-201ENST00000345851 TRIM26Q12899 539 aaPredicted RBP34.26■■■■□ 3.08
TRIM3-201ENST00000345851 PABPN1Q86U42 306 aaKnown RBP eCLIP34.11■■■■□ 3.05
TRIM3-201ENST00000345851 UNC13AQ9UPW8 1703 aa34.06■■■■□ 3.04
TRIM3-201ENST00000345851 SCAF1Q9H7N4 1312 aaKnown RBP34.04■■■■□ 3.04
TRIM3-201ENST00000345851 MROH2BQ7Z745 1585 aa34.02■■■■□ 3.04
TRIM3-201ENST00000345851 ZEB1P37275 1124 aaPredicted RBP33.86■■■■□ 3.01
TRIM3-201ENST00000345851 WIZO95785 1651 aa33.8■■■■□ 3
TRIM3-201ENST00000345851 BICRAQ9NZM4 1560 aa33.68■■■□□ 2.98
TRIM3-201ENST00000345851 BAZ1AQ9NRL2 1556 aaPredicted RBP33.61■■■□□ 2.97
TRIM3-201ENST00000345851 SMARCA4P51532 1647 aa33.47■■■□□ 2.95
TRIM3-201ENST00000345851 FAM9AQ8IZU1 332 aaPredicted RBP33.31■■■□□ 2.92
TRIM3-201ENST00000345851 TRIM41Q8WV44 630 aa33.3■■■□□ 2.92
TRIM3-201ENST00000345851 EHMT2Q96KQ7 1210 aa33.27■■■□□ 2.92
TRIM3-201ENST00000345851 ACIN1Q9UKV3 1341 aaKnown RBP33.21■■■□□ 2.91
TRIM3-201ENST00000345851 NEUROD1Q13562 356 aa33.19■■■□□ 2.9
TRIM3-201ENST00000345851 TOP2AP11388 1531 aaKnown RBP33.14■■■□□ 2.9
TRIM3-201ENST00000345851 CCDC88BA6NC98 1476 aa33.08■■■□□ 2.89
TRIM3-201ENST00000345851 GTF3C3Q9Y5Q9 886 aa33.01■■■□□ 2.87
TRIM3-201ENST00000345851 SMARCA2P51531 1590 aa32.97■■■□□ 2.87
TRIM3-201ENST00000345851 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.97■■■□□ 2.87
TRIM3-201ENST00000345851 MYT1Q01538 1121 aa32.9■■■□□ 2.86
TRIM3-201ENST00000345851 ATAD2BQ9ULI0 1458 aa32.87■■■□□ 2.85
TRIM3-201ENST00000345851 CCER1Q8TC90 406 aaPredicted RBP32.87■■■□□ 2.85
TRIM3-201ENST00000345851 CENPBP07199 599 aaPredicted RBP32.82■■■□□ 2.84
TRIM3-201ENST00000345851 EIF4G1Q04637 1599 aaKnown RBP32.79■■■□□ 2.84
TRIM3-201ENST00000345851 DIEXFQ68CQ4 756 aaKnown RBP32.79■■■□□ 2.84
TRIM3-201ENST00000345851 ABCC8Q09428 1581 aa32.78■■■□□ 2.84
TRIM3-201ENST00000345851 PEG3Q9GZU2 1588 aa32.77■■■□□ 2.84
TRIM3-201ENST00000345851 BAZ1BQ9UIG0 1483 aaKnown RBP32.75■■■□□ 2.83
TRIM3-201ENST00000345851 TTBK1Q5TCY1 1321 aaPredicted RBP32.44■■■□□ 2.78
TRIM3-201ENST00000345851 YTHDC1Q96MU7 727 aaKnown RBP32.38■■■□□ 2.77
TRIM3-201ENST00000345851 NCAPD3P42695 1498 aa32.33■■■□□ 2.77
TRIM3-201ENST00000345851 SOGA1O94964 1423 aa32.29■■■□□ 2.76
TRIM3-201ENST00000345851 WRNQ14191 1432 aaPredicted RBP eCLIP32.26■■■□□ 2.75
TRIM3-201ENST00000345851 RUSC2Q8N2Y8 1516 aa32.21■■■□□ 2.75
TRIM3-201ENST00000345851 HMGXB3Q12766 1538 aa32.2■■■□□ 2.74
TRIM3-201ENST00000345851 ZNF316A6NFI3 1004 aaPredicted RBP32.15■■■□□ 2.74
TRIM3-201ENST00000345851 SYNJ1O43426 1573 aa32.13■■■□□ 2.73
TRIM3-201ENST00000345851 CC2D2AQ9P2K1 1620 aa32.1■■■□□ 2.73
TRIM3-201ENST00000345851 CSRNP3Q8WYN3 585 aa31.99■■■□□ 2.71
TRIM3-201ENST00000345851 MIER1Q8N108 512 aa31.98■■■□□ 2.71
TRIM3-201ENST00000345851 UBTFP17480 764 aaKnown RBP31.9■■■□□ 2.7
TRIM3-201ENST00000345851 CFTRP13569 1480 aa31.84■■■□□ 2.69
TRIM3-201ENST00000345851 DNAJC5BQ9UF47 199 aa31.81■■■□□ 2.68
TRIM3-201ENST00000345851 CEP162Q5TB80 1403 aa31.78■■■□□ 2.68
TRIM3-201ENST00000345851 EEA1Q15075 1411 aa31.74■■■□□ 2.67
TRIM3-201ENST00000345851 TOP2BQ02880 1626 aa31.73■■■□□ 2.67
TRIM3-201ENST00000345851 CADPSQ9ULU8 1353 aa31.71■■■□□ 2.67
TRIM3-201ENST00000345851 CUX1P39880 1505 aa31.7■■■□□ 2.67
TRIM3-201ENST00000345851 RANGAP1P46060 587 aaPredicted RBP31.7■■■□□ 2.67
TRIM3-201ENST00000345851 HNRNPUL2Q1KMD3 747 aaKnown RBP31.62■■■□□ 2.65
TRIM3-201ENST00000345851 TNIKQ9UKE5 1360 aa31.59■■■□□ 2.65
TRIM3-201ENST00000345851 NESP48681 1621 aa31.59■■■□□ 2.65
TRIM3-201ENST00000345851 BIVM-ERCC5R4GMW8 1640 aa31.59■■■□□ 2.65
TRIM3-201ENST00000345851 GOLGA3Q08378 1498 aa31.58■■■□□ 2.65
TRIM3-201ENST00000345851 RAPGEF2Q9Y4G8 1499 aa31.51■■■□□ 2.64
TRIM3-201ENST00000345851 CEP164Q9UPV0 1460 aa31.48■■■□□ 2.63
TRIM3-201ENST00000345851 PRDM2Q13029 1718 aa31.42■■■□□ 2.62
TRIM3-201ENST00000345851 FANCD2Q9BXW9 1451 aa31.42■■■□□ 2.62
TRIM3-201ENST00000345851 SUPT16HQ9Y5B9 1047 aaKnown RBP31.41■■■□□ 2.62
TRIM3-201ENST00000345851 KIF21BO75037 1637 aa31.38■■■□□ 2.61
TRIM3-201ENST00000345851 KIF27Q86VH2 1401 aa31.32■■■□□ 2.6
TRIM3-201ENST00000345851 FGD5Q6ZNL6 1462 aa31.3■■■□□ 2.6
TRIM3-201ENST00000345851 CUX2O14529 1486 aa31.28■■■□□ 2.6
TRIM3-201ENST00000345851 CLIP1P30622 1438 aa31.26■■■□□ 2.59
TRIM3-201ENST00000345851 TSHZ2Q9NRE2 1034 aa31.23■■■□□ 2.59
TRIM3-201ENST00000345851 PRXQ9BXM0 1461 aa31.2■■■□□ 2.59
TRIM3-201ENST00000345851 ANP32EQ9BTT0 268 aa31.19■■■□□ 2.58
TRIM3-201ENST00000345851 RAD54L2Q9Y4B4 1467 aa31.17■■■□□ 2.58
TRIM3-201ENST00000345851 CLSPNQ9HAW4 1339 aa31.17■■■□□ 2.58
TRIM3-201ENST00000345851 IGF1RP08069 1367 aa31.11■■■□□ 2.57
TRIM3-201ENST00000345851 TOPBP1Q92547 1522 aa31.1■■■□□ 2.57
TRIM3-201ENST00000345851 LAMC3Q9Y6N6 1575 aa31.06■■■□□ 2.56
TRIM3-201ENST00000345851 POLA1P09884 1462 aaPredicted RBP31.04■■■□□ 2.56
TRIM3-201ENST00000345851 BCL11AQ9H165 835 aa31.04■■■□□ 2.56
TRIM3-201ENST00000345851 DNMBPQ6XZF7 1577 aa31.03■■■□□ 2.56
TRIM3-201ENST00000345851 ERICH3Q5RHP9 1530 aa31.02■■■□□ 2.56
TRIM3-201ENST00000345851 URB2Q14146 1524 aaKnown RBP31.02■■■□□ 2.56
TRIM3-201ENST00000345851 APLP2Q06481 763 aa31.01■■■□□ 2.56
TRIM3-201ENST00000345851 CARMIL1Q5VZK9 1371 aa30.97■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms