Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC14.75□□□□□ -0.05
HMGA1P17096 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
HMGA1P17096 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HMGA1P17096 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 AL590824.1-201ENST00000403828 1349 ntBASIC14.75□□□□□ -0.05
HMGA1P17096 PDXDC2P-206ENST00000534700 1315 ntBASIC14.75□□□□□ -0.05
HMGA1P17096 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGA1P17096 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
HMGA1P17096 ODCP-201ENST00000459650 1639 ntBASIC14.75□□□□□ -0.05
HMGA1P17096 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGA1P17096 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGA1P17096 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGA1P17096 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGA1P17096 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HMGA1P17096 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGA1P17096 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGA1P17096 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGA1P17096 GRPEL2P1-201ENST00000453145 339 ntBASIC14.75□□□□□ -0.05
HMGA1P17096 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC14.75□□□□□ -0.05
HMGA1P17096 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC14.75□□□□□ -0.05
HMGA1P17096 RPS23-204ENST00000507980 836 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGA1P17096 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC14.75□□□□□ -0.05
HMGA1P17096 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC14.75□□□□□ -0.05
HMGA1P17096 SNORD3B-1-201ENST00000577988 758 ntBASIC14.75□□□□□ -0.05
HMGA1P17096 GAS7-216ENST00000583882 553 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGA1P17096 LINC00244-201ENST00000625073 613 ntBASIC14.75□□□□□ -0.05
HMGA1P17096 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGA1P17096 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGA1P17096 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGA1P17096 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGA1P17096 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HMGA1P17096 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGA1P17096 CYP51A1P3-201ENST00000400072 1428 ntBASIC14.75□□□□□ -0.05
HMGA1P17096 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 MSANTD2P1-201ENST00000445341 1368 ntBASIC14.74□□□□□ -0.05
HMGA1P17096 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 TBC1D27-202ENST00000424239 1573 ntBASIC14.74□□□□□ -0.05
HMGA1P17096 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC14.74□□□□□ -0.05
HMGA1P17096 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC14.74□□□□□ -0.05
HMGA1P17096 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 HINT1-205ENST00000508488 703 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 IGHV1-12-201ENST00000518307 205 ntBASIC14.74□□□□□ -0.05
HMGA1P17096 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC14.74□□□□□ -0.05
HMGA1P17096 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC14.74□□□□□ -0.05
HMGA1P17096 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC14.74□□□□□ -0.05
HMGA1P17096 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 AC009084.3-201ENST00000623356 437 ntBASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms