RNA–Protein interactions for RNA: ENST00000639534.1

CHD1L-211, Transcript of chromodomain helicase DNA binding protein 1 like, humanhuman

TSL 5 BASIC

Gene CHD1L, Length 1,144 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1L-211ENST00000639534 NISCHQ9Y2I1 1504 aa32.11■■■□□ 2.73
CHD1L-211ENST00000639534 CCDC180Q9P1Z9 1646 aa27.95■■■□□ 2.06
CHD1L-211ENST00000639534 ZCCHC6Q5VYS8 1495 aaKnown RBP27.06■■□□□ 1.92
CHD1L-211ENST00000639534 DCAF1Q9Y4B6 1507 aa26.66■■□□□ 1.86
CHD1L-211ENST00000639534 DCAF8L2P0C7V8 631 aa26.28■■□□□ 1.8
CHD1L-211ENST00000639534 MYO15BQ96JP2 1530 aa26.25■■□□□ 1.79
CHD1L-211ENST00000639534 SHROOM4Q9ULL8 1493 aa26.25■■□□□ 1.79
CHD1L-211ENST00000639534 ABCC9O60706 1549 aa25.97■■□□□ 1.75
CHD1L-211ENST00000639534 NACADO15069 1562 aa25.95■■□□□ 1.74
CHD1L-211ENST00000639534 RB1CC1Q8TDY2 1594 aa25.64■■□□□ 1.69
CHD1L-211ENST00000639534 SCRIBQ14160 1630 aa25.6■■□□□ 1.69
CHD1L-211ENST00000639534 SUPT5HO00267 1087 aaKnown RBP25.45■■□□□ 1.66
CHD1L-211ENST00000639534 RSF1Q96T23 1441 aaPredicted RBP25■■□□□ 1.59
CHD1L-211ENST00000639534 UNC13AQ9UPW8 1703 aa24.99■■□□□ 1.59
CHD1L-211ENST00000639534 CECR2Q9BXF3 1484 aa24.83■■□□□ 1.56
CHD1L-211ENST00000639534 BAZ1AQ9NRL2 1556 aaPredicted RBP24.82■■□□□ 1.56
CHD1L-211ENST00000639534 MROH2BQ7Z745 1585 aa24.76■■□□□ 1.55
CHD1L-211ENST00000639534 BICRAQ9NZM4 1560 aa24.76■■□□□ 1.55
CHD1L-211ENST00000639534 SMARCA4P51532 1647 aa24.62■■□□□ 1.53
CHD1L-211ENST00000639534 CHIC1Q5VXU3 224 aa24.58■■□□□ 1.53
CHD1L-211ENST00000639534 WIZO95785 1651 aa24.56■■□□□ 1.52
CHD1L-211ENST00000639534 PABPN1Q86U42 306 aaKnown RBP eCLIP24.49■■□□□ 1.51
CHD1L-211ENST00000639534 TOP2AP11388 1531 aaKnown RBP24.42■■□□□ 1.5
CHD1L-211ENST00000639534 PEG3Q9GZU2 1588 aa24.36■■□□□ 1.49
CHD1L-211ENST00000639534 SMARCA2P51531 1590 aa24.2■■□□□ 1.46
CHD1L-211ENST00000639534 ATAD2BQ9ULI0 1458 aa24.13■■□□□ 1.45
CHD1L-211ENST00000639534 CCDC88BA6NC98 1476 aa24.12■■□□□ 1.45
CHD1L-211ENST00000639534 EIF4G1Q04637 1599 aaKnown RBP24.08■■□□□ 1.45
CHD1L-211ENST00000639534 BAZ1BQ9UIG0 1483 aaKnown RBP24.03■■□□□ 1.44
CHD1L-211ENST00000639534 TRIM41Q8WV44 630 aa24■■□□□ 1.43
CHD1L-211ENST00000639534 HMGXB3Q12766 1538 aa23.93■■□□□ 1.42
CHD1L-211ENST00000639534 NCAPD3P42695 1498 aa23.9■■□□□ 1.42
CHD1L-211ENST00000639534 ABCC8Q09428 1581 aa23.65■■□□□ 1.38
CHD1L-211ENST00000639534 LOC105371045A0A1W2PR82 267 aa23.56■■□□□ 1.36
CHD1L-211ENST00000639534 WRNQ14191 1432 aaPredicted RBP eCLIP23.56■■□□□ 1.36
CHD1L-211ENST00000639534 CC2D2AQ9P2K1 1620 aa23.55■■□□□ 1.36
CHD1L-211ENST00000639534 EEA1Q15075 1411 aa23.51■■□□□ 1.35
CHD1L-211ENST00000639534 FAM9AQ8IZU1 332 aaPredicted RBP23.45■■□□□ 1.34
CHD1L-211ENST00000639534 CFTRP13569 1480 aa23.44■■□□□ 1.34
CHD1L-211ENST00000639534 SYNJ1O43426 1573 aa23.4■■□□□ 1.34
CHD1L-211ENST00000639534 PRDM2Q13029 1718 aa23.38■■□□□ 1.33
CHD1L-211ENST00000639534 TOP2BQ02880 1626 aa23.34■■□□□ 1.33
CHD1L-211ENST00000639534 BIVM-ERCC5R4GMW8 1640 aa23.33■■□□□ 1.33
CHD1L-211ENST00000639534 CADPSQ9ULU8 1353 aa23.29■■□□□ 1.32
CHD1L-211ENST00000639534 SOGA1O94964 1423 aa23.27■■□□□ 1.32
CHD1L-211ENST00000639534 CSRNP3Q8WYN3 585 aa23.22■■□□□ 1.31
CHD1L-211ENST00000639534 CUX1P39880 1505 aa23.15■■□□□ 1.3
CHD1L-211ENST00000639534 RUSC2Q8N2Y8 1516 aa23.13■■□□□ 1.29
CHD1L-211ENST00000639534 GOLGA3Q08378 1498 aa23.12■■□□□ 1.29
CHD1L-211ENST00000639534 KIF21BO75037 1637 aa23.12■■□□□ 1.29
CHD1L-211ENST00000639534 TNIKQ9UKE5 1360 aa23.11■■□□□ 1.29
CHD1L-211ENST00000639534 CEP164Q9UPV0 1460 aa23.1■■□□□ 1.29
CHD1L-211ENST00000639534 LAMC3Q9Y6N6 1575 aa23.07■■□□□ 1.28
CHD1L-211ENST00000639534 FANCD2Q9BXW9 1451 aa23.03■■□□□ 1.28
CHD1L-211ENST00000639534 EHMT2Q96KQ7 1210 aa23.02■■□□□ 1.28
CHD1L-211ENST00000639534 KIF27Q86VH2 1401 aa22.98■■□□□ 1.27
CHD1L-211ENST00000639534 CEP162Q5TB80 1403 aa22.95■■□□□ 1.26
CHD1L-211ENST00000639534 ERICH3Q5RHP9 1530 aa22.92■■□□□ 1.26
CHD1L-211ENST00000639534 UBTFP17480 764 aaKnown RBP22.92■■□□□ 1.26
CHD1L-211ENST00000639534 TRIM26Q12899 539 aaPredicted RBP22.92■■□□□ 1.26
CHD1L-211ENST00000639534 DNMBPQ6XZF7 1577 aa22.92■■□□□ 1.26
CHD1L-211ENST00000639534 PDS5BQ9NTI5 1447 aa22.88■■□□□ 1.25
CHD1L-211ENST00000639534 NESP48681 1621 aa22.86■■□□□ 1.25
CHD1L-211ENST00000639534 FGD5Q6ZNL6 1462 aa22.86■■□□□ 1.25
CHD1L-211ENST00000639534 PRXQ9BXM0 1461 aa22.86■■□□□ 1.25
CHD1L-211ENST00000639534 PCGF6Q9BYE7 350 aa22.86■■□□□ 1.25
CHD1L-211ENST00000639534 RAPGEF2Q9Y4G8 1499 aa22.81■■□□□ 1.24
CHD1L-211ENST00000639534 TOPBP1Q92547 1522 aa22.81■■□□□ 1.24
CHD1L-211ENST00000639534 CUX2O14529 1486 aa22.79■■□□□ 1.24
CHD1L-211ENST00000639534 ABCA10Q8WWZ4 1543 aa22.72■■□□□ 1.23
CHD1L-211ENST00000639534 CLIP1P30622 1438 aa22.72■■□□□ 1.23
CHD1L-211ENST00000639534 POLA1P09884 1462 aaPredicted RBP22.71■■□□□ 1.23
CHD1L-211ENST00000639534 URB2Q14146 1524 aaKnown RBP22.68■■□□□ 1.22
CHD1L-211ENST00000639534 IGF1RP08069 1367 aa22.66■■□□□ 1.22
CHD1L-211ENST00000639534 KIF21AQ7Z4S6 1674 aa22.65■■□□□ 1.22
CHD1L-211ENST00000639534 DNAJC5BQ9UF47 199 aa22.63■■□□□ 1.21
CHD1L-211ENST00000639534 WDR97A6NE52 1622 aa22.6■■□□□ 1.21
CHD1L-211ENST00000639534 VPS8Q8N3P4 1428 aa22.59■■□□□ 1.21
CHD1L-211ENST00000639534 CARMIL1Q5VZK9 1371 aa22.58■■□□□ 1.21
CHD1L-211ENST00000639534 RAD54L2Q9Y4B4 1467 aa22.58■■□□□ 1.2
CHD1L-211ENST00000639534 CUL7Q14999 1698 aa22.57■■□□□ 1.2
CHD1L-211ENST00000639534 HRCP23327 699 aa22.55■■□□□ 1.2
CHD1L-211ENST00000639534 MRC2Q9UBG0 1479 aa22.54■■□□□ 1.2
CHD1L-211ENST00000639534 ABCA5Q8WWZ7 1642 aa22.49■■□□□ 1.19
CHD1L-211ENST00000639534 TARBP1Q13395 1621 aaKnown RBP22.44■■□□□ 1.18
CHD1L-211ENST00000639534 GAPVD1Q14C86 1478 aa22.42■■□□□ 1.18
CHD1L-211ENST00000639534 ARAP1Q96P48 1450 aa22.42■■□□□ 1.18
CHD1L-211ENST00000639534 APLP2Q06481 763 aa22.41■■□□□ 1.18
CHD1L-211ENST00000639534 WDR62O43379 1518 aa22.41■■□□□ 1.18
CHD1L-211ENST00000639534 PPARGC1BQ86YN6 1023 aaKnown RBP22.37■■□□□ 1.17
CHD1L-211ENST00000639534 ARHGAP35Q9NRY4 1499 aa22.36■■□□□ 1.17
CHD1L-211ENST00000639534 IFT140Q96RY7 1462 aa22.34■■□□□ 1.17
CHD1L-211ENST00000639534 TDRD9Q8NDG6 1382 aaKnown RBP22.33■■□□□ 1.17
CHD1L-211ENST00000639534 RANGAP1P46060 587 aaPredicted RBP22.32■■□□□ 1.16
CHD1L-211ENST00000639534 CTTNBP2Q8WZ74 1663 aa22.32■■□□□ 1.16
CHD1L-211ENST00000639534 EFCAB5A4FU69 1503 aa22.31■■□□□ 1.16
CHD1L-211ENST00000639534 ERCC6Q03468 1493 aa22.3■■□□□ 1.16
CHD1L-211ENST00000639534 ZEB1P37275 1124 aaPredicted RBP22.29■■□□□ 1.16
CHD1L-211ENST00000639534 PBRM1Q86U86 1689 aa22.27■■□□□ 1.16
CHD1L-211ENST00000639534 GRIN2BQ13224 1484 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms