RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 NISCHQ9Y2I1 1504 aa30.78■■■□□ 2.52
SYNE3-203ENST00000554873 SHROOM4Q9ULL8 1493 aa26.54■■□□□ 1.84
SYNE3-203ENST00000554873 PELP1Q8IZL8 1130 aaKnown RBP26.51■■□□□ 1.83
SYNE3-203ENST00000554873 HRCP23327 699 aa26.5■■□□□ 1.83
SYNE3-203ENST00000554873 SUPT5HO00267 1087 aaKnown RBP26.19■■□□□ 1.78
SYNE3-203ENST00000554873 ZCCHC6Q5VYS8 1495 aaKnown RBP26.08■■□□□ 1.76
SYNE3-203ENST00000554873 CCDC180Q9P1Z9 1646 aa25.94■■□□□ 1.74
SYNE3-203ENST00000554873 PPARGC1BQ86YN6 1023 aaKnown RBP25.74■■□□□ 1.71
SYNE3-203ENST00000554873 MYT1Q01538 1121 aa25.71■■□□□ 1.71
SYNE3-203ENST00000554873 CHIC1Q5VXU3 224 aa25.61■■□□□ 1.69
SYNE3-203ENST00000554873 PCGF6Q9BYE7 350 aa25.57■■□□□ 1.68
SYNE3-203ENST00000554873 DCAF8L2P0C7V8 631 aa25.55■■□□□ 1.68
SYNE3-203ENST00000554873 MYO15BQ96JP2 1530 aa25.55■■□□□ 1.68
SYNE3-203ENST00000554873 SCAF1Q9H7N4 1312 aaKnown RBP25.29■■□□□ 1.64
SYNE3-203ENST00000554873 DCAF1Q9Y4B6 1507 aa25.21■■□□□ 1.63
SYNE3-203ENST00000554873 LOC105371045A0A1W2PR82 267 aa24.9■■□□□ 1.58
SYNE3-203ENST00000554873 ZEB1P37275 1124 aaPredicted RBP24.81■■□□□ 1.56
SYNE3-203ENST00000554873 TRIM26Q12899 539 aaPredicted RBP24.74■■□□□ 1.55
SYNE3-203ENST00000554873 ABCC9O60706 1549 aa24.63■■□□□ 1.53
SYNE3-203ENST00000554873 ACIN1Q9UKV3 1341 aaKnown RBP24.58■■□□□ 1.52
SYNE3-203ENST00000554873 RSF1Q96T23 1441 aaPredicted RBP24.52■■□□□ 1.52
SYNE3-203ENST00000554873 SCRIBQ14160 1630 aa24.44■■□□□ 1.5
SYNE3-203ENST00000554873 NEUROD1Q13562 356 aa24.4■■□□□ 1.5
SYNE3-203ENST00000554873 TRIM41Q8WV44 630 aa24.35■■□□□ 1.49
SYNE3-203ENST00000554873 GTF3C3Q9Y5Q9 886 aa24.34■■□□□ 1.49
SYNE3-203ENST00000554873 TTBK1Q5TCY1 1321 aaPredicted RBP24.31■■□□□ 1.48
SYNE3-203ENST00000554873 RB1CC1Q8TDY2 1594 aa24.26■■□□□ 1.47
SYNE3-203ENST00000554873 CENPBP07199 599 aaPredicted RBP24.22■■□□□ 1.47
SYNE3-203ENST00000554873 FAM9AQ8IZU1 332 aaPredicted RBP24.2■■□□□ 1.46
SYNE3-203ENST00000554873 CECR2Q9BXF3 1484 aa24.05■■□□□ 1.44
SYNE3-203ENST00000554873 EHMT2Q96KQ7 1210 aa24■■□□□ 1.43
SYNE3-203ENST00000554873 MROH2BQ7Z745 1585 aa23.97■■□□□ 1.43
SYNE3-203ENST00000554873 NACADO15069 1562 aa23.96■■□□□ 1.43
SYNE3-203ENST00000554873 WIZO95785 1651 aa23.85■■□□□ 1.41
SYNE3-203ENST00000554873 DIEXFQ68CQ4 756 aaKnown RBP23.83■■□□□ 1.41
SYNE3-203ENST00000554873 BCL11AQ9H165 835 aa23.76■■□□□ 1.39
SYNE3-203ENST00000554873 BAZ1AQ9NRL2 1556 aaPredicted RBP23.67■■□□□ 1.38
SYNE3-203ENST00000554873 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
SYNE3-203ENST00000554873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.53■■□□□ 1.36
SYNE3-203ENST00000554873 CCER1Q8TC90 406 aaPredicted RBP23.53■■□□□ 1.36
SYNE3-203ENST00000554873 ANP32EQ9BTT0 268 aa23.49■■□□□ 1.35
SYNE3-203ENST00000554873 TOP2AP11388 1531 aaKnown RBP23.44■■□□□ 1.34
SYNE3-203ENST00000554873 ABCC8Q09428 1581 aa23.43■■□□□ 1.34
SYNE3-203ENST00000554873 CCDC88BA6NC98 1476 aa23.43■■□□□ 1.34
SYNE3-203ENST00000554873 YTHDC1Q96MU7 727 aaKnown RBP23.38■■□□□ 1.33
SYNE3-203ENST00000554873 SMARCA4P51532 1647 aa23.36■■□□□ 1.33
SYNE3-203ENST00000554873 WRNQ14191 1432 aaPredicted RBP eCLIP23.35■■□□□ 1.33
SYNE3-203ENST00000554873 SMARCA2P51531 1590 aa23.34■■□□□ 1.33
SYNE3-203ENST00000554873 SOGA1O94964 1423 aa23.31■■□□□ 1.32
SYNE3-203ENST00000554873 CEP162Q5TB80 1403 aa23.31■■□□□ 1.32
SYNE3-203ENST00000554873 ZNF316A6NFI3 1004 aaPredicted RBP23.28■■□□□ 1.32
SYNE3-203ENST00000554873 TNIKQ9UKE5 1360 aa23.26■■□□□ 1.31
SYNE3-203ENST00000554873 CLSPNQ9HAW4 1339 aa23.22■■□□□ 1.31
SYNE3-203ENST00000554873 CSRNP3Q8WYN3 585 aa23.22■■□□□ 1.31
SYNE3-203ENST00000554873 RUSC2Q8N2Y8 1516 aa23.19■■□□□ 1.3
SYNE3-203ENST00000554873 UNC13AQ9UPW8 1703 aa23.18■■□□□ 1.3
SYNE3-203ENST00000554873 PRKCSHP14314 528 aaPredicted RBP23.18■■□□□ 1.3
SYNE3-203ENST00000554873 EEA1Q15075 1411 aa23.16■■□□□ 1.3
SYNE3-203ENST00000554873 UBTFP17480 764 aaKnown RBP23.16■■□□□ 1.3
SYNE3-203ENST00000554873 MIER1Q8N108 512 aa23.13■■□□□ 1.29
SYNE3-203ENST00000554873 TSHZ2Q9NRE2 1034 aa23.13■■□□□ 1.29
SYNE3-203ENST00000554873 SUPT16HQ9Y5B9 1047 aaKnown RBP23.08■■□□□ 1.28
SYNE3-203ENST00000554873 GOLGA3Q08378 1498 aa23.04■■□□□ 1.28
SYNE3-203ENST00000554873 PABPN1Q86U42 306 aaKnown RBP eCLIP22.99■■□□□ 1.27
SYNE3-203ENST00000554873 BICRAQ9NZM4 1560 aa22.9■■□□□ 1.26
SYNE3-203ENST00000554873 PEG3Q9GZU2 1588 aa22.88■■□□□ 1.25
SYNE3-203ENST00000554873 CEP164Q9UPV0 1460 aa22.87■■□□□ 1.25
SYNE3-203ENST00000554873 SYNJ1O43426 1573 aa22.86■■□□□ 1.25
SYNE3-203ENST00000554873 HNRNPUL2Q1KMD3 747 aaKnown RBP22.84■■□□□ 1.25
SYNE3-203ENST00000554873 ERICH6Q7L0X2 663 aa22.83■■□□□ 1.25
SYNE3-203ENST00000554873 KIF21BO75037 1637 aa22.82■■□□□ 1.24
SYNE3-203ENST00000554873 CLIP1P30622 1438 aa22.82■■□□□ 1.24
SYNE3-203ENST00000554873 VPS8Q8N3P4 1428 aa22.74■■□□□ 1.23
SYNE3-203ENST00000554873 ATAD2BQ9ULI0 1458 aa22.73■■□□□ 1.23
SYNE3-203ENST00000554873 RAPGEF2Q9Y4G8 1499 aa22.71■■□□□ 1.23
SYNE3-203ENST00000554873 BAZ1BQ9UIG0 1483 aaKnown RBP22.69■■□□□ 1.22
SYNE3-203ENST00000554873 APLP2Q06481 763 aa22.68■■□□□ 1.22
SYNE3-203ENST00000554873 RANGAP1P46060 587 aaPredicted RBP22.65■■□□□ 1.22
SYNE3-203ENST00000554873 TOP2BQ02880 1626 aa22.54■■□□□ 1.2
SYNE3-203ENST00000554873 RBM19Q9Y4C8 960 aaKnown RBP22.53■■□□□ 1.2
SYNE3-203ENST00000554873 PRXQ9BXM0 1461 aa22.44■■□□□ 1.18
SYNE3-203ENST00000554873 BIVM-ERCC5R4GMW8 1640 aa22.42■■□□□ 1.18
SYNE3-203ENST00000554873 ERICH3Q5RHP9 1530 aa22.41■■□□□ 1.18
SYNE3-203ENST00000554873 ARAP1Q96P48 1450 aa22.41■■□□□ 1.18
SYNE3-203ENST00000554873 KANK4Q5T7N3 995 aaPredicted RBP22.4■■□□□ 1.18
SYNE3-203ENST00000554873 DHX57Q6P158 1386 aaKnown RBP22.4■■□□□ 1.18
SYNE3-203ENST00000554873 BCANQ96GW7 911 aa22.38■■□□□ 1.17
SYNE3-203ENST00000554873 MYT1LQ9UL68 1186 aa22.35■■□□□ 1.17
SYNE3-203ENST00000554873 MSH5O43196 834 aa22.35■■□□□ 1.17
SYNE3-203ENST00000554873 FKBP8Q14318 412 aa22.31■■□□□ 1.16
SYNE3-203ENST00000554873 CUX1P39880 1505 aa22.28■■□□□ 1.16
SYNE3-203ENST00000554873 RRBP1Q9P2E9 1410 aaKnown RBP22.26■■□□□ 1.15
SYNE3-203ENST00000554873 KIF27Q86VH2 1401 aa22.25■■□□□ 1.15
SYNE3-203ENST00000554873 FANCIQ9NVI1 1328 aa22.24■■□□□ 1.15
SYNE3-203ENST00000554873 NCAPD3P42695 1498 aa22.22■■□□□ 1.15
SYNE3-203ENST00000554873 HMGXB3Q12766 1538 aa22.18■■□□□ 1.14
SYNE3-203ENST00000554873 ANO8Q9HCE9 1232 aaPredicted RBP22.17■■□□□ 1.14
SYNE3-203ENST00000554873 ARHGAP35Q9NRY4 1499 aa22.17■■□□□ 1.14
SYNE3-203ENST00000554873 CCNB3Q8WWL7 1395 aa22.17■■□□□ 1.14
SYNE3-203ENST00000554873 NEFLP07196 543 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms