Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 AC015688.4-201ENST00000580780 1647 ntBASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 DPM3-202ENST00000368399 517 ntBASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 AKR7A2P1-201ENST00000460134 915 ntBASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 HIST2H2BC-201ENST00000498492 580 ntBASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 AC008805.1-201ENST00000590892 364 ntBASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFWD3Q6PCD5 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 AC139712.1-201ENST00000378256 1875 ntBASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 AL590440.2-201ENST00000641973 1595 ntBASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 AL035414.1-201ENST00000451327 857 ntBASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 EIF4HP1-201ENST00000453115 687 ntBASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms