RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 NISCHQ9Y2I1 1504 aa34.57■■■■□ 3.12
CD48-203ENST00000613788 CCDC180Q9P1Z9 1646 aa30.45■■■□□ 2.47
CD48-203ENST00000613788 ABCC9O60706 1549 aa29.34■■■□□ 2.29
CD48-203ENST00000613788 ZCCHC6Q5VYS8 1495 aaKnown RBP28.89■■■□□ 2.21
CD48-203ENST00000613788 DCAF8L2P0C7V8 631 aa28.79■■■□□ 2.2
CD48-203ENST00000613788 DCAF1Q9Y4B6 1507 aa28.62■■■□□ 2.17
CD48-203ENST00000613788 MYO15BQ96JP2 1530 aa28.56■■■□□ 2.16
CD48-203ENST00000613788 NACADO15069 1562 aa28.55■■■□□ 2.16
CD48-203ENST00000613788 RB1CC1Q8TDY2 1594 aa28.45■■■□□ 2.15
CD48-203ENST00000613788 SCRIBQ14160 1630 aa27.84■■■□□ 2.05
CD48-203ENST00000613788 UNC13AQ9UPW8 1703 aa27.71■■■□□ 2.03
CD48-203ENST00000613788 SHROOM4Q9ULL8 1493 aa27.66■■■□□ 2.02
CD48-203ENST00000613788 PABPN1Q86U42 306 aaKnown RBP eCLIP27.56■■■□□ 2
CD48-203ENST00000613788 BICRAQ9NZM4 1560 aa27.53■■■□□ 2
CD48-203ENST00000613788 CECR2Q9BXF3 1484 aa26.86■■□□□ 1.89
CD48-203ENST00000613788 EIF4G1Q04637 1599 aaKnown RBP26.79■■□□□ 1.88
CD48-203ENST00000613788 BAZ1AQ9NRL2 1556 aaPredicted RBP26.76■■□□□ 1.87
CD48-203ENST00000613788 SMARCA4P51532 1647 aa26.68■■□□□ 1.86
CD48-203ENST00000613788 MROH2BQ7Z745 1585 aa26.63■■□□□ 1.85
CD48-203ENST00000613788 RSF1Q96T23 1441 aaPredicted RBP26.56■■□□□ 1.84
CD48-203ENST00000613788 CC2D2AQ9P2K1 1620 aa26.54■■□□□ 1.84
CD48-203ENST00000613788 DNAJC5BQ9UF47 199 aa26.47■■□□□ 1.83
CD48-203ENST00000613788 ATAD2BQ9ULI0 1458 aa26.44■■□□□ 1.82
CD48-203ENST00000613788 SMARCA2P51531 1590 aa26.44■■□□□ 1.82
CD48-203ENST00000613788 PEG3Q9GZU2 1588 aa26.42■■□□□ 1.82
CD48-203ENST00000613788 NCAPD3P42695 1498 aa26.36■■□□□ 1.81
CD48-203ENST00000613788 WIZO95785 1651 aa26.35■■□□□ 1.81
CD48-203ENST00000613788 SUPT5HO00267 1087 aaKnown RBP26.34■■□□□ 1.81
CD48-203ENST00000613788 BAZ1BQ9UIG0 1483 aaKnown RBP26.26■■□□□ 1.79
CD48-203ENST00000613788 HMGXB3Q12766 1538 aa26.24■■□□□ 1.79
CD48-203ENST00000613788 TOP2AP11388 1531 aaKnown RBP26.12■■□□□ 1.77
CD48-203ENST00000613788 CCDC88BA6NC98 1476 aa25.84■■□□□ 1.73
CD48-203ENST00000613788 CADPSQ9ULU8 1353 aa25.65■■□□□ 1.7
CD48-203ENST00000613788 CFTRP13569 1480 aa25.58■■□□□ 1.68
CD48-203ENST00000613788 LAMC3Q9Y6N6 1575 aa25.56■■□□□ 1.68
CD48-203ENST00000613788 NESP48681 1621 aa25.53■■□□□ 1.68
CD48-203ENST00000613788 PDS5BQ9NTI5 1447 aa25.43■■□□□ 1.66
CD48-203ENST00000613788 PRDM2Q13029 1718 aa25.32■■□□□ 1.64
CD48-203ENST00000613788 FANCD2Q9BXW9 1451 aa25.32■■□□□ 1.64
CD48-203ENST00000613788 ERCC6Q03468 1493 aa25.28■■□□□ 1.64
CD48-203ENST00000613788 CEP164Q9UPV0 1460 aa25.24■■□□□ 1.63
CD48-203ENST00000613788 KIF21AQ7Z4S6 1674 aa25.2■■□□□ 1.62
CD48-203ENST00000613788 MRC2Q9UBG0 1479 aa25.08■■□□□ 1.61
CD48-203ENST00000613788 ABCC8Q09428 1581 aa25.04■■□□□ 1.6
CD48-203ENST00000613788 WRNQ14191 1432 aaPredicted RBP eCLIP25.04■■□□□ 1.6
CD48-203ENST00000613788 URB2Q14146 1524 aaKnown RBP25■■□□□ 1.59
CD48-203ENST00000613788 THOC2Q8NI27 1593 aaKnown RBP24.99■■□□□ 1.59
CD48-203ENST00000613788 DNMBPQ6XZF7 1577 aa24.97■■□□□ 1.59
CD48-203ENST00000613788 TOPBP1Q92547 1522 aa24.96■■□□□ 1.59
CD48-203ENST00000613788 WDR62O43379 1518 aa24.95■■□□□ 1.59
CD48-203ENST00000613788 CUX1P39880 1505 aa24.95■■□□□ 1.59
CD48-203ENST00000613788 CHIC1Q5VXU3 224 aa24.89■■□□□ 1.57
CD48-203ENST00000613788 TOP2BQ02880 1626 aa24.88■■□□□ 1.57
CD48-203ENST00000613788 TRIM41Q8WV44 630 aa24.88■■□□□ 1.57
CD48-203ENST00000613788 SYNJ1O43426 1573 aa24.88■■□□□ 1.57
CD48-203ENST00000613788 BIVM-ERCC5R4GMW8 1640 aa24.85■■□□□ 1.57
CD48-203ENST00000613788 CUX2O14529 1486 aa24.8■■□□□ 1.56
CD48-203ENST00000613788 FGD5Q6ZNL6 1462 aa24.8■■□□□ 1.56
CD48-203ENST00000613788 POLA1P09884 1462 aaPredicted RBP24.78■■□□□ 1.56
CD48-203ENST00000613788 SOGA1O94964 1423 aa24.75■■□□□ 1.55
CD48-203ENST00000613788 IFT140Q96RY7 1462 aa24.69■■□□□ 1.54
CD48-203ENST00000613788 RAD54L2Q9Y4B4 1467 aa24.67■■□□□ 1.54
CD48-203ENST00000613788 TARBP1Q13395 1621 aaKnown RBP24.61■■□□□ 1.53
CD48-203ENST00000613788 ABCA10Q8WWZ4 1543 aa24.6■■□□□ 1.53
CD48-203ENST00000613788 TDRD9Q8NDG6 1382 aaKnown RBP24.53■■□□□ 1.52
CD48-203ENST00000613788 ZNF608Q9ULD9 1512 aaPredicted RBP24.51■■□□□ 1.51
CD48-203ENST00000613788 WDR97A6NE52 1622 aa24.49■■□□□ 1.51
CD48-203ENST00000613788 KIF27Q86VH2 1401 aa24.49■■□□□ 1.51
CD48-203ENST00000613788 AQRO60306 1485 aaKnown RBP eCLIP24.47■■□□□ 1.51
CD48-203ENST00000613788 GAPVD1Q14C86 1478 aa24.44■■□□□ 1.5
CD48-203ENST00000613788 EIF4G3O43432 1585 aaKnown RBP24.41■■□□□ 1.5
CD48-203ENST00000613788 ABCA5Q8WWZ7 1642 aa24.4■■□□□ 1.5
CD48-203ENST00000613788 EEA1Q15075 1411 aa24.39■■□□□ 1.49
CD48-203ENST00000613788 RUSC2Q8N2Y8 1516 aa24.38■■□□□ 1.49
CD48-203ENST00000613788 GRIN2BQ13224 1484 aa24.37■■□□□ 1.49
CD48-203ENST00000613788 FAM9AQ8IZU1 332 aaPredicted RBP24.33■■□□□ 1.49
CD48-203ENST00000613788 IGF1RP08069 1367 aa24.33■■□□□ 1.49
CD48-203ENST00000613788 ERICH3Q5RHP9 1530 aa24.31■■□□□ 1.48
CD48-203ENST00000613788 CSRNP3Q8WYN3 585 aa24.3■■□□□ 1.48
CD48-203ENST00000613788 PBRM1Q86U86 1689 aa24.27■■□□□ 1.48
CD48-203ENST00000613788 SNAPC4Q5SXM2 1469 aa24.24■■□□□ 1.47
CD48-203ENST00000613788 MAGI1Q96QZ7 1491 aaPredicted RBP24.24■■□□□ 1.47
CD48-203ENST00000613788 CARMIL1Q5VZK9 1371 aa24.2■■□□□ 1.47
CD48-203ENST00000613788 FHAD1B1AJZ9 1412 aa24.19■■□□□ 1.46
CD48-203ENST00000613788 CUL7Q14999 1698 aa24.17■■□□□ 1.46
CD48-203ENST00000613788 CHMP7Q8WUX9 453 aaPredicted RBP24.16■■□□□ 1.46
CD48-203ENST00000613788 SYNJ2O15056 1496 aa24.15■■□□□ 1.46
CD48-203ENST00000613788 FBLN2P98095 1184 aa24.14■■□□□ 1.45
CD48-203ENST00000613788 ADAMTS12P58397 1594 aa24.14■■□□□ 1.45
CD48-203ENST00000613788 PRXQ9BXM0 1461 aa24.12■■□□□ 1.45
CD48-203ENST00000613788 RAPGEF2Q9Y4G8 1499 aa24.09■■□□□ 1.45
CD48-203ENST00000613788 GRIN2AQ12879 1464 aa24.04■■□□□ 1.44
CD48-203ENST00000613788 KIF21BO75037 1637 aa24.02■■□□□ 1.44
CD48-203ENST00000613788 CHD1O14646 1710 aa23.97■■□□□ 1.43
CD48-203ENST00000613788 GOLGA3Q08378 1498 aa23.96■■□□□ 1.43
CD48-203ENST00000613788 EHMT2Q96KQ7 1210 aa23.96■■□□□ 1.43
CD48-203ENST00000613788 OSCARQ8IYS5 282 aa23.95■■□□□ 1.43
CD48-203ENST00000613788 UBTFP17480 764 aaKnown RBP23.93■■□□□ 1.42
CD48-203ENST00000613788 NUP160Q12769 1436 aa23.91■■□□□ 1.42
CD48-203ENST00000613788 LOC105371045A0A1W2PR82 267 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms