RNA–Protein interactions for RNA: ENST00000612548.4

CIT-219, Transcript of citron rho-interacting serine/threonine kinase, humanhuman

TSL 1 (best) BASIC

Gene CIT, Length 1,799 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIT-219ENST00000612548 NISCHQ9Y2I1 1504 aa34■■■■□ 3.03
CIT-219ENST00000612548 CCDC180Q9P1Z9 1646 aa29.77■■■□□ 2.36
CIT-219ENST00000612548 ZCCHC6Q5VYS8 1495 aaKnown RBP28.53■■■□□ 2.16
CIT-219ENST00000612548 ABCC9O60706 1549 aa28.36■■■□□ 2.13
CIT-219ENST00000612548 DCAF8L2P0C7V8 631 aa28.16■■■□□ 2.1
CIT-219ENST00000612548 DCAF1Q9Y4B6 1507 aa28.09■■■□□ 2.09
CIT-219ENST00000612548 MYO15BQ96JP2 1530 aa27.84■■■□□ 2.05
CIT-219ENST00000612548 NACADO15069 1562 aa27.77■■■□□ 2.04
CIT-219ENST00000612548 SHROOM4Q9ULL8 1493 aa27.62■■■□□ 2.01
CIT-219ENST00000612548 RB1CC1Q8TDY2 1594 aa27.59■■■□□ 2.01
CIT-219ENST00000612548 SCRIBQ14160 1630 aa27.39■■□□□ 1.97
CIT-219ENST00000612548 UNC13AQ9UPW8 1703 aa27.07■■□□□ 1.92
CIT-219ENST00000612548 BICRAQ9NZM4 1560 aa26.77■■□□□ 1.88
CIT-219ENST00000612548 PABPN1Q86U42 306 aaKnown RBP eCLIP26.69■■□□□ 1.86
CIT-219ENST00000612548 CECR2Q9BXF3 1484 aa26.44■■□□□ 1.82
CIT-219ENST00000612548 SUPT5HO00267 1087 aaKnown RBP26.43■■□□□ 1.82
CIT-219ENST00000612548 RSF1Q96T23 1441 aaPredicted RBP26.28■■□□□ 1.8
CIT-219ENST00000612548 BAZ1AQ9NRL2 1556 aaPredicted RBP26.28■■□□□ 1.8
CIT-219ENST00000612548 MROH2BQ7Z745 1585 aa26.27■■□□□ 1.8
CIT-219ENST00000612548 SMARCA4P51532 1647 aa26.21■■□□□ 1.79
CIT-219ENST00000612548 WIZO95785 1651 aa26.07■■□□□ 1.76
CIT-219ENST00000612548 EIF4G1Q04637 1599 aaKnown RBP25.99■■□□□ 1.75
CIT-219ENST00000612548 PEG3Q9GZU2 1588 aa25.87■■□□□ 1.73
CIT-219ENST00000612548 ATAD2BQ9ULI0 1458 aa25.81■■□□□ 1.72
CIT-219ENST00000612548 SMARCA2P51531 1590 aa25.8■■□□□ 1.72
CIT-219ENST00000612548 TOP2AP11388 1531 aaKnown RBP25.78■■□□□ 1.72
CIT-219ENST00000612548 BAZ1BQ9UIG0 1483 aaKnown RBP25.67■■□□□ 1.7
CIT-219ENST00000612548 CC2D2AQ9P2K1 1620 aa25.67■■□□□ 1.7
CIT-219ENST00000612548 NCAPD3P42695 1498 aa25.6■■□□□ 1.69
CIT-219ENST00000612548 HMGXB3Q12766 1538 aa25.58■■□□□ 1.69
CIT-219ENST00000612548 CCDC88BA6NC98 1476 aa25.49■■□□□ 1.67
CIT-219ENST00000612548 DNAJC5BQ9UF47 199 aa25.18■■□□□ 1.62
CIT-219ENST00000612548 CHIC1Q5VXU3 224 aa25.16■■□□□ 1.62
CIT-219ENST00000612548 CFTRP13569 1480 aa24.99■■□□□ 1.59
CIT-219ENST00000612548 CADPSQ9ULU8 1353 aa24.94■■□□□ 1.58
CIT-219ENST00000612548 ABCC8Q09428 1581 aa24.92■■□□□ 1.58
CIT-219ENST00000612548 PRDM2Q13029 1718 aa24.91■■□□□ 1.58
CIT-219ENST00000612548 TRIM41Q8WV44 630 aa24.85■■□□□ 1.57
CIT-219ENST00000612548 NESP48681 1621 aa24.83■■□□□ 1.56
CIT-219ENST00000612548 LAMC3Q9Y6N6 1575 aa24.81■■□□□ 1.56
CIT-219ENST00000612548 WRNQ14191 1432 aaPredicted RBP eCLIP24.76■■□□□ 1.55
CIT-219ENST00000612548 FANCD2Q9BXW9 1451 aa24.69■■□□□ 1.54
CIT-219ENST00000612548 SYNJ1O43426 1573 aa24.69■■□□□ 1.54
CIT-219ENST00000612548 PDS5BQ9NTI5 1447 aa24.6■■□□□ 1.53
CIT-219ENST00000612548 TOP2BQ02880 1626 aa24.6■■□□□ 1.53
CIT-219ENST00000612548 CUX1P39880 1505 aa24.59■■□□□ 1.53
CIT-219ENST00000612548 BIVM-ERCC5R4GMW8 1640 aa24.58■■□□□ 1.53
CIT-219ENST00000612548 CEP164Q9UPV0 1460 aa24.56■■□□□ 1.52
CIT-219ENST00000612548 KIF21AQ7Z4S6 1674 aa24.56■■□□□ 1.52
CIT-219ENST00000612548 DNMBPQ6XZF7 1577 aa24.44■■□□□ 1.5
CIT-219ENST00000612548 FAM9AQ8IZU1 332 aaPredicted RBP24.42■■□□□ 1.5
CIT-219ENST00000612548 TOPBP1Q92547 1522 aa24.41■■□□□ 1.5
CIT-219ENST00000612548 URB2Q14146 1524 aaKnown RBP24.4■■□□□ 1.5
CIT-219ENST00000612548 SOGA1O94964 1423 aa24.38■■□□□ 1.49
CIT-219ENST00000612548 ERCC6Q03468 1493 aa24.35■■□□□ 1.49
CIT-219ENST00000612548 FGD5Q6ZNL6 1462 aa24.35■■□□□ 1.49
CIT-219ENST00000612548 MRC2Q9UBG0 1479 aa24.31■■□□□ 1.48
CIT-219ENST00000612548 RUSC2Q8N2Y8 1516 aa24.31■■□□□ 1.48
CIT-219ENST00000612548 POLA1P09884 1462 aaPredicted RBP24.27■■□□□ 1.48
CIT-219ENST00000612548 EEA1Q15075 1411 aa24.26■■□□□ 1.47
CIT-219ENST00000612548 WDR62O43379 1518 aa24.21■■□□□ 1.47
CIT-219ENST00000612548 THOC2Q8NI27 1593 aaKnown RBP24.2■■□□□ 1.46
CIT-219ENST00000612548 LOC105371045A0A1W2PR82 267 aa24.2■■□□□ 1.46
CIT-219ENST00000612548 RAD54L2Q9Y4B4 1467 aa24.19■■□□□ 1.46
CIT-219ENST00000612548 CUX2O14529 1486 aa24.15■■□□□ 1.46
CIT-219ENST00000612548 KIF27Q86VH2 1401 aa24.15■■□□□ 1.46
CIT-219ENST00000612548 CSRNP3Q8WYN3 585 aa24.14■■□□□ 1.46
CIT-219ENST00000612548 ABCA10Q8WWZ4 1543 aa24.12■■□□□ 1.45
CIT-219ENST00000612548 EHMT2Q96KQ7 1210 aa24.11■■□□□ 1.45
CIT-219ENST00000612548 WDR97A6NE52 1622 aa24.11■■□□□ 1.45
CIT-219ENST00000612548 TARBP1Q13395 1621 aaKnown RBP24.06■■□□□ 1.44
CIT-219ENST00000612548 KIF21BO75037 1637 aa24■■□□□ 1.43
CIT-219ENST00000612548 IFT140Q96RY7 1462 aa23.98■■□□□ 1.43
CIT-219ENST00000612548 ABCA5Q8WWZ7 1642 aa23.97■■□□□ 1.43
CIT-219ENST00000612548 TDRD9Q8NDG6 1382 aaKnown RBP23.95■■□□□ 1.42
CIT-219ENST00000612548 GOLGA3Q08378 1498 aa23.95■■□□□ 1.42
CIT-219ENST00000612548 IGF1RP08069 1367 aa23.93■■□□□ 1.42
CIT-219ENST00000612548 PRXQ9BXM0 1461 aa23.92■■□□□ 1.42
CIT-219ENST00000612548 GAPVD1Q14C86 1478 aa23.91■■□□□ 1.42
CIT-219ENST00000612548 RAPGEF2Q9Y4G8 1499 aa23.91■■□□□ 1.42
CIT-219ENST00000612548 ERICH3Q5RHP9 1530 aa23.87■■□□□ 1.41
CIT-219ENST00000612548 ZNF608Q9ULD9 1512 aaPredicted RBP23.87■■□□□ 1.41
CIT-219ENST00000612548 AQRO60306 1485 aaKnown RBP eCLIP23.85■■□□□ 1.412e-7■■■■■ 42.6
CIT-219ENST00000612548 UBTFP17480 764 aaKnown RBP23.84■■□□□ 1.41
CIT-219ENST00000612548 PBRM1Q86U86 1689 aa23.84■■□□□ 1.41
CIT-219ENST00000612548 CARMIL1Q5VZK9 1371 aa23.83■■□□□ 1.4
CIT-219ENST00000612548 CUL7Q14999 1698 aa23.82■■□□□ 1.4
CIT-219ENST00000612548 EIF4G3O43432 1585 aaKnown RBP23.81■■□□□ 1.4
CIT-219ENST00000612548 TNIKQ9UKE5 1360 aa23.8■■□□□ 1.4
CIT-219ENST00000612548 GRIN2BQ13224 1484 aa23.76■■□□□ 1.39
CIT-219ENST00000612548 CEP162Q5TB80 1403 aa23.69■■□□□ 1.38
CIT-219ENST00000612548 ADAMTS12P58397 1594 aa23.68■■□□□ 1.38
CIT-219ENST00000612548 SNAPC4Q5SXM2 1469 aa23.65■■□□□ 1.38
CIT-219ENST00000612548 FHAD1B1AJZ9 1412 aa23.64■■□□□ 1.37
CIT-219ENST00000612548 MAGI1Q96QZ7 1491 aaPredicted RBP23.58■■□□□ 1.37
CIT-219ENST00000612548 CLIP1P30622 1438 aa23.55■■□□□ 1.36
CIT-219ENST00000612548 RANGAP1P46060 587 aaPredicted RBP23.55■■□□□ 1.36
CIT-219ENST00000612548 CTTNBP2Q8WZ74 1663 aa23.54■■□□□ 1.36
CIT-219ENST00000612548 SYNJ2O15056 1496 aa23.49■■□□□ 1.35
CIT-219ENST00000612548 GRIN2AQ12879 1464 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms