RNA–Protein interactions for RNA: ENST00000555055.5

XRCC3-211, Transcript of X-ray repair cross complementing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene XRCC3, Length 2,584 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-211ENST00000555055 NISCHQ9Y2I1 1504 aa31.67■■■□□ 2.66
XRCC3-211ENST00000555055 SHROOM4Q9ULL8 1493 aa27.04■■□□□ 1.92
XRCC3-211ENST00000555055 CCDC180Q9P1Z9 1646 aa26.98■■□□□ 1.91
XRCC3-211ENST00000555055 DCAF8L2P0C7V8 631 aa26.77■■□□□ 1.88
XRCC3-211ENST00000555055 ZCCHC6Q5VYS8 1495 aaKnown RBP26.68■■□□□ 1.86
XRCC3-211ENST00000555055 SUPT5HO00267 1087 aaKnown RBP26.28■■□□□ 1.8
XRCC3-211ENST00000555055 DCAF1Q9Y4B6 1507 aa25.8■■□□□ 1.72
XRCC3-211ENST00000555055 ABCC9O60706 1549 aa25.72■■□□□ 1.71
XRCC3-211ENST00000555055 SCRIBQ14160 1630 aa25.5■■□□□ 1.67
XRCC3-211ENST00000555055 CHIC1Q5VXU3 224 aa25.18■■□□□ 1.62
XRCC3-211ENST00000555055 MYO15BQ96JP2 1530 aa25.18■■□□□ 1.62
XRCC3-211ENST00000555055 NACADO15069 1562 aa25.09■■□□□ 1.61
XRCC3-211ENST00000555055 RSF1Q96T23 1441 aaPredicted RBP24.96■■□□□ 1.59
XRCC3-211ENST00000555055 CECR2Q9BXF3 1484 aa24.89■■□□□ 1.57
XRCC3-211ENST00000555055 RB1CC1Q8TDY2 1594 aa24.82■■□□□ 1.56
XRCC3-211ENST00000555055 MROH2BQ7Z745 1585 aa24.7■■□□□ 1.54
XRCC3-211ENST00000555055 PABPN1Q86U42 306 aaKnown RBP eCLIP24.6■■□□□ 1.53
XRCC3-211ENST00000555055 LOC105371045A0A1W2PR82 267 aa24.58■■□□□ 1.53
XRCC3-211ENST00000555055 WIZO95785 1651 aa24.56■■□□□ 1.52
XRCC3-211ENST00000555055 UNC13AQ9UPW8 1703 aa24.52■■□□□ 1.52
XRCC3-211ENST00000555055 TRIM41Q8WV44 630 aa24.38■■□□□ 1.49
XRCC3-211ENST00000555055 FAM9AQ8IZU1 332 aaPredicted RBP24.36■■□□□ 1.49
XRCC3-211ENST00000555055 EHMT2Q96KQ7 1210 aa24.33■■□□□ 1.49
XRCC3-211ENST00000555055 BAZ1AQ9NRL2 1556 aaPredicted RBP24.32■■□□□ 1.48
XRCC3-211ENST00000555055 BICRAQ9NZM4 1560 aa24.24■■□□□ 1.47
XRCC3-211ENST00000555055 SMARCA4P51532 1647 aa24.22■■□□□ 1.47
XRCC3-211ENST00000555055 HRCP23327 699 aa24.1■■□□□ 1.45
XRCC3-211ENST00000555055 PCGF6Q9BYE7 350 aa24.07■■□□□ 1.44
XRCC3-211ENST00000555055 TOP2AP11388 1531 aaKnown RBP24.03■■□□□ 1.44
XRCC3-211ENST00000555055 CCDC88BA6NC98 1476 aa24.02■■□□□ 1.44
XRCC3-211ENST00000555055 SMARCA2P51531 1590 aa23.94■■□□□ 1.42
XRCC3-211ENST00000555055 ABCC8Q09428 1581 aa23.92■■□□□ 1.42
XRCC3-211ENST00000555055 EIF4G1Q04637 1599 aaKnown RBP23.89■■□□□ 1.41
XRCC3-211ENST00000555055 ATAD2BQ9ULI0 1458 aa23.73■■□□□ 1.39
XRCC3-211ENST00000555055 BAZ1BQ9UIG0 1483 aaKnown RBP23.66■■□□□ 1.38
XRCC3-211ENST00000555055 PEG3Q9GZU2 1588 aa23.65■■□□□ 1.38
XRCC3-211ENST00000555055 PPARGC1BQ86YN6 1023 aaKnown RBP23.63■■□□□ 1.37
XRCC3-211ENST00000555055 SOGA1O94964 1423 aa23.6■■□□□ 1.37
XRCC3-211ENST00000555055 RUSC2Q8N2Y8 1516 aa23.54■■□□□ 1.36
XRCC3-211ENST00000555055 TRIM26Q12899 539 aaPredicted RBP23.52■■□□□ 1.36
XRCC3-211ENST00000555055 WRNQ14191 1432 aaPredicted RBP eCLIP23.46■■□□□ 1.35
XRCC3-211ENST00000555055 TTBK1Q5TCY1 1321 aaPredicted RBP23.39■■□□□ 1.33
XRCC3-211ENST00000555055 SYNJ1O43426 1573 aa23.38■■□□□ 1.33
XRCC3-211ENST00000555055 CSRNP3Q8WYN3 585 aa23.35■■□□□ 1.33
XRCC3-211ENST00000555055 UBTFP17480 764 aaKnown RBP23.34■■□□□ 1.33
XRCC3-211ENST00000555055 NCAPD3P42695 1498 aa23.27■■□□□ 1.32
XRCC3-211ENST00000555055 RANGAP1P46060 587 aaPredicted RBP23.22■■□□□ 1.31
XRCC3-211ENST00000555055 CEP162Q5TB80 1403 aa23.21■■□□□ 1.31
XRCC3-211ENST00000555055 HMGXB3Q12766 1538 aa23.19■■□□□ 1.3
XRCC3-211ENST00000555055 EEA1Q15075 1411 aa23.12■■□□□ 1.29
XRCC3-211ENST00000555055 TNIKQ9UKE5 1360 aa23.11■■□□□ 1.29
XRCC3-211ENST00000555055 GOLGA3Q08378 1498 aa23.07■■□□□ 1.28
XRCC3-211ENST00000555055 CC2D2AQ9P2K1 1620 aa23.03■■□□□ 1.28
XRCC3-211ENST00000555055 TOP2BQ02880 1626 aa23.03■■□□□ 1.28
XRCC3-211ENST00000555055 ZEB1P37275 1124 aaPredicted RBP23.02■■□□□ 1.28
XRCC3-211ENST00000555055 RAPGEF2Q9Y4G8 1499 aa23.01■■□□□ 1.27
XRCC3-211ENST00000555055 CFTRP13569 1480 aa23■■□□□ 1.27
XRCC3-211ENST00000555055 CUX1P39880 1505 aa23■■□□□ 1.27
XRCC3-211ENST00000555055 PELP1Q8IZL8 1130 aaKnown RBP22.97■■□□□ 1.27
XRCC3-211ENST00000555055 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
XRCC3-211ENST00000555055 BIVM-ERCC5R4GMW8 1640 aa22.91■■□□□ 1.26
XRCC3-211ENST00000555055 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.9■■□□□ 1.26
XRCC3-211ENST00000555055 DNAJC5BQ9UF47 199 aa22.89■■□□□ 1.25
XRCC3-211ENST00000555055 KIF21BO75037 1637 aa22.88■■□□□ 1.25
XRCC3-211ENST00000555055 CADPSQ9ULU8 1353 aa22.87■■□□□ 1.25
XRCC3-211ENST00000555055 CLIP1P30622 1438 aa22.86■■□□□ 1.25
XRCC3-211ENST00000555055 NESP48681 1621 aa22.79■■□□□ 1.24
XRCC3-211ENST00000555055 KIF27Q86VH2 1401 aa22.74■■□□□ 1.23
XRCC3-211ENST00000555055 PRXQ9BXM0 1461 aa22.71■■□□□ 1.23
XRCC3-211ENST00000555055 CCER1Q8TC90 406 aaPredicted RBP22.7■■□□□ 1.22
XRCC3-211ENST00000555055 CUX2O14529 1486 aa22.7■■□□□ 1.22
XRCC3-211ENST00000555055 FANCD2Q9BXW9 1451 aa22.68■■□□□ 1.22
XRCC3-211ENST00000555055 FGD5Q6ZNL6 1462 aa22.67■■□□□ 1.22
XRCC3-211ENST00000555055 PRDM2Q13029 1718 aa22.67■■□□□ 1.22
XRCC3-211ENST00000555055 VPS8Q8N3P4 1428 aa22.65■■□□□ 1.22
XRCC3-211ENST00000555055 HNRNPUL2Q1KMD3 747 aaKnown RBP22.62■■□□□ 1.21
XRCC3-211ENST00000555055 APLP2Q06481 763 aa22.61■■□□□ 1.21
XRCC3-211ENST00000555055 RAD54L2Q9Y4B4 1467 aa22.59■■□□□ 1.21
XRCC3-211ENST00000555055 IGF1RP08069 1367 aa22.58■■□□□ 1.21
XRCC3-211ENST00000555055 ERICH3Q5RHP9 1530 aa22.57■■□□□ 1.2
XRCC3-211ENST00000555055 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
XRCC3-211ENST00000555055 KANK4Q5T7N3 995 aaPredicted RBP22.5■■□□□ 1.19
XRCC3-211ENST00000555055 CARMIL1Q5VZK9 1371 aa22.48■■□□□ 1.19
XRCC3-211ENST00000555055 P3H3Q8IVL6 736 aa22.46■■□□□ 1.19
XRCC3-211ENST00000555055 TOPBP1Q92547 1522 aa22.46■■□□□ 1.19
XRCC3-211ENST00000555055 POLA1P09884 1462 aaPredicted RBP22.45■■□□□ 1.18
XRCC3-211ENST00000555055 SCAF1Q9H7N4 1312 aaKnown RBP22.44■■□□□ 1.18
XRCC3-211ENST00000555055 ARHGAP35Q9NRY4 1499 aa22.42■■□□□ 1.18
XRCC3-211ENST00000555055 DNMBPQ6XZF7 1577 aa22.41■■□□□ 1.18
XRCC3-211ENST00000555055 URB2Q14146 1524 aaKnown RBP22.39■■□□□ 1.17
XRCC3-211ENST00000555055 TDRD9Q8NDG6 1382 aaKnown RBP22.36■■□□□ 1.17
XRCC3-211ENST00000555055 ATP1B4Q9UN42 357 aaPredicted RBP22.33■■□□□ 1.17
XRCC3-211ENST00000555055 LAMC3Q9Y6N6 1575 aa22.32■■□□□ 1.16
XRCC3-211ENST00000555055 ABCA10Q8WWZ4 1543 aa22.3■■□□□ 1.16
XRCC3-211ENST00000555055 KIF21AQ7Z4S6 1674 aa22.27■■□□□ 1.16
XRCC3-211ENST00000555055 ITGAEP38570 1179 aa22.27■■□□□ 1.16
XRCC3-211ENST00000555055 PDS5BQ9NTI5 1447 aa22.26■■□□□ 1.15
XRCC3-211ENST00000555055 FHOD3Q2V2M9 1422 aa22.2■■□□□ 1.14
XRCC3-211ENST00000555055 ACIN1Q9UKV3 1341 aaKnown RBP22.14■■□□□ 1.13
XRCC3-211ENST00000555055 GAPVD1Q14C86 1478 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms