RNA–Protein interactions for RNA: ENST00000262717.8

CDH20-201, Transcript of cadherin 20, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDH20, Length 3,882 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH20-201ENST00000262717 NISCHQ9Y2I1 1504 aa28.79■■■□□ 2.2
CDH20-201ENST00000262717 SHROOM4Q9ULL8 1493 aa26.03■■□□□ 1.76
CDH20-201ENST00000262717 DCAF8L2P0C7V8 631 aa25.95■■□□□ 1.74
CDH20-201ENST00000262717 SUPT5HO00267 1087 aaKnown RBP25.71■■□□□ 1.71
CDH20-201ENST00000262717 EHMT2Q96KQ7 1210 aa24.26■■□□□ 1.47
CDH20-201ENST00000262717 CHIC1Q5VXU3 224 aa24.22■■□□□ 1.47
CDH20-201ENST00000262717 ZCCHC6Q5VYS8 1495 aaKnown RBP24.18■■□□□ 1.46
CDH20-201ENST00000262717 PCGF6Q9BYE7 350 aa24.14■■□□□ 1.46
CDH20-201ENST00000262717 FAM9AQ8IZU1 332 aaPredicted RBP24■■□□□ 1.43
CDH20-201ENST00000262717 LOC105371045A0A1W2PR82 267 aa23.98■■□□□ 1.43
CDH20-201ENST00000262717 CCDC180Q9P1Z9 1646 aa23.86■■□□□ 1.41
CDH20-201ENST00000262717 MYO15BQ96JP2 1530 aa23.74■■□□□ 1.39
CDH20-201ENST00000262717 TRIM41Q8WV44 630 aa23.65■■□□□ 1.38
CDH20-201ENST00000262717 PPARGC1BQ86YN6 1023 aaKnown RBP23.56■■□□□ 1.36
CDH20-201ENST00000262717 HRCP23327 699 aa23.55■■□□□ 1.36
CDH20-201ENST00000262717 ABCC9O60706 1549 aa23.5■■□□□ 1.35
CDH20-201ENST00000262717 TTBK1Q5TCY1 1321 aaPredicted RBP23.39■■□□□ 1.34
CDH20-201ENST00000262717 SCRIBQ14160 1630 aa23.35■■□□□ 1.33
CDH20-201ENST00000262717 TRIM26Q12899 539 aaPredicted RBP23.19■■□□□ 1.3
CDH20-201ENST00000262717 RSF1Q96T23 1441 aaPredicted RBP23.03■■□□□ 1.28
CDH20-201ENST00000262717 DCAF1Q9Y4B6 1507 aa23.03■■□□□ 1.28
CDH20-201ENST00000262717 PABPN1Q86U42 306 aaKnown RBP eCLIP22.94■■□□□ 1.26
CDH20-201ENST00000262717 RANGAP1P46060 587 aaPredicted RBP22.92■■□□□ 1.26
CDH20-201ENST00000262717 CECR2Q9BXF3 1484 aa22.82■■□□□ 1.24
CDH20-201ENST00000262717 UBTFP17480 764 aaKnown RBP22.81■■□□□ 1.24
CDH20-201ENST00000262717 CCER1Q8TC90 406 aaPredicted RBP22.77■■□□□ 1.23
CDH20-201ENST00000262717 RB1CC1Q8TDY2 1594 aa22.72■■□□□ 1.23
CDH20-201ENST00000262717 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.71■■□□□ 1.23
CDH20-201ENST00000262717 ZEB1P37275 1124 aaPredicted RBP22.66■■□□□ 1.22
CDH20-201ENST00000262717 MROH2BQ7Z745 1585 aa22.57■■□□□ 1.2
CDH20-201ENST00000262717 NACADO15069 1562 aa22.46■■□□□ 1.19
CDH20-201ENST00000262717 APLP2Q06481 763 aa22.43■■□□□ 1.18
CDH20-201ENST00000262717 WIZO95785 1651 aa22.38■■□□□ 1.17
CDH20-201ENST00000262717 HNRNPUL2Q1KMD3 747 aaKnown RBP22.36■■□□□ 1.17
CDH20-201ENST00000262717 CSRNP3Q8WYN3 585 aa22.27■■□□□ 1.16
CDH20-201ENST00000262717 ABCC8Q09428 1581 aa22.2■■□□□ 1.14
CDH20-201ENST00000262717 YTHDC1Q96MU7 727 aaKnown RBP22.16■■□□□ 1.14
CDH20-201ENST00000262717 BAZ1AQ9NRL2 1556 aaPredicted RBP22.14■■□□□ 1.14
CDH20-201ENST00000262717 SOGA1O94964 1423 aa22.13■■□□□ 1.13
CDH20-201ENST00000262717 CCDC88BA6NC98 1476 aa22.12■■□□□ 1.13
CDH20-201ENST00000262717 ITGAEP38570 1179 aa22.05■■□□□ 1.12
CDH20-201ENST00000262717 DIEXFQ68CQ4 756 aaKnown RBP22.05■■□□□ 1.12
CDH20-201ENST00000262717 ATP1B4Q9UN42 357 aaPredicted RBP22.04■■□□□ 1.12
CDH20-201ENST00000262717 CEP162Q5TB80 1403 aa22.02■■□□□ 1.12
CDH20-201ENST00000262717 RUSC2Q8N2Y8 1516 aa21.94■■□□□ 1.1
CDH20-201ENST00000262717 CENPBP07199 599 aaPredicted RBP21.89■■□□□ 1.1
CDH20-201ENST00000262717 WRNQ14191 1432 aaPredicted RBP eCLIP21.87■■□□□ 1.09
CDH20-201ENST00000262717 TOP2AP11388 1531 aaKnown RBP21.85■■□□□ 1.09
CDH20-201ENST00000262717 SMARCA4P51532 1647 aa21.84■■□□□ 1.09
CDH20-201ENST00000262717 SCAF1Q9H7N4 1312 aaKnown RBP21.82■■□□□ 1.08
CDH20-201ENST00000262717 TNIKQ9UKE5 1360 aa21.79■■□□□ 1.08
CDH20-201ENST00000262717 SMARCA2P51531 1590 aa21.73■■□□□ 1.07
CDH20-201ENST00000262717 CLIP1P30622 1438 aa21.73■■□□□ 1.07
CDH20-201ENST00000262717 GOLGA3Q08378 1498 aa21.72■■□□□ 1.07
CDH20-201ENST00000262717 BAZ1BQ9UIG0 1483 aaKnown RBP21.72■■□□□ 1.07
CDH20-201ENST00000262717 NEUROD1Q13562 356 aa21.72■■□□□ 1.07
CDH20-201ENST00000262717 ZNF316A6NFI3 1004 aaPredicted RBP21.7■■□□□ 1.06
CDH20-201ENST00000262717 GTF3C3Q9Y5Q9 886 aa21.7■■□□□ 1.06
CDH20-201ENST00000262717 P3H3Q8IVL6 736 aa21.68■■□□□ 1.06
CDH20-201ENST00000262717 ACIN1Q9UKV3 1341 aaKnown RBP21.65■■□□□ 1.06
CDH20-201ENST00000262717 EEA1Q15075 1411 aa21.63■■□□□ 1.05
CDH20-201ENST00000262717 CEP164Q9UPV0 1460 aa21.55■■□□□ 1.04
CDH20-201ENST00000262717 FAM50AQ14320 339 aaKnown RBP21.53■■□□□ 1.04
CDH20-201ENST00000262717 ATAD2BQ9ULI0 1458 aa21.52■■□□□ 1.04
CDH20-201ENST00000262717 MIER1Q8N108 512 aa21.49■■□□□ 1.03
CDH20-201ENST00000262717 RAPGEF2Q9Y4G8 1499 aa21.48■■□□□ 1.03
CDH20-201ENST00000262717 KANK4Q5T7N3 995 aaPredicted RBP21.44■■□□□ 1.02
CDH20-201ENST00000262717 UNC13AQ9UPW8 1703 aa21.4■■□□□ 1.02
CDH20-201ENST00000262717 BICRAQ9NZM4 1560 aa21.38■■□□□ 1.01
CDH20-201ENST00000262717 SYNJ1O43426 1573 aa21.37■■□□□ 1.01
CDH20-201ENST00000262717 VPS8Q8N3P4 1428 aa21.36■■□□□ 1.01
CDH20-201ENST00000262717 EIF4G1Q04637 1599 aaKnown RBP21.34■■□□□ 1.01
CDH20-201ENST00000262717 PELP1Q8IZL8 1130 aaKnown RBP21.31■■□□□ 1
CDH20-201ENST00000262717 ARID3CA6NKF2 412 aa21.3■■□□□ 1
CDH20-201ENST00000262717 KIF27Q86VH2 1401 aa21.26■□□□□ 0.99
CDH20-201ENST00000262717 HIRIP3Q9BW71 556 aaPredicted RBP21.21■□□□□ 0.99
CDH20-201ENST00000262717 CUX2O14529 1486 aa21.16■□□□□ 0.98
CDH20-201ENST00000262717 KIF21BO75037 1637 aa21.09■□□□□ 0.97
CDH20-201ENST00000262717 SIN3AQ96ST3 1273 aa21.08■□□□□ 0.97
CDH20-201ENST00000262717 CNGB1Q14028 1251 aaPredicted RBP21.08■□□□□ 0.97
CDH20-201ENST00000262717 BCANQ96GW7 911 aa21.06■□□□□ 0.96
CDH20-201ENST00000262717 DDX10Q13206 875 aaKnown RBP21.06■□□□□ 0.96
CDH20-201ENST00000262717 CARMIL1Q5VZK9 1371 aa21.05■□□□□ 0.96
CDH20-201ENST00000262717 CCNB3Q8WWL7 1395 aa21.04■□□□□ 0.96
CDH20-201ENST00000262717 TRIM52Q96A61 297 aa21■□□□□ 0.95
CDH20-201ENST00000262717 CHIC2Q9UKJ5 165 aa20.98■□□□□ 0.95
CDH20-201ENST00000262717 ARAP1Q96P48 1450 aa20.98■□□□□ 0.95
CDH20-201ENST00000262717 DHX57Q6P158 1386 aaKnown RBP20.97■□□□□ 0.95
CDH20-201ENST00000262717 CUX1P39880 1505 aa20.94■□□□□ 0.94
CDH20-201ENST00000262717 PEG3Q9GZU2 1588 aa20.93■□□□□ 0.94
CDH20-201ENST00000262717 NCAPD3P42695 1498 aa20.92■□□□□ 0.94
CDH20-201ENST00000262717 CADPSQ9ULU8 1353 aa20.92■□□□□ 0.94
CDH20-201ENST00000262717 TOP2BQ02880 1626 aa20.92■□□□□ 0.94
CDH20-201ENST00000262717 IGF1RP08069 1367 aa20.91■□□□□ 0.94
CDH20-201ENST00000262717 POLR3GLQ9BT43 218 aa20.9■□□□□ 0.94
CDH20-201ENST00000262717 RAB3GAP2Q9H2M9 1393 aa20.89■□□□□ 0.93
CDH20-201ENST00000262717 PRXQ9BXM0 1461 aa20.89■□□□□ 0.93
CDH20-201ENST00000262717 FBLN2P98095 1184 aa20.86■□□□□ 0.93
CDH20-201ENST00000262717 KCNH8Q96L42 1107 aa20.86■□□□□ 0.93
CDH20-201ENST00000262717 MTUS2Q5JR59 1369 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms