RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 NISCHQ9Y2I1 1504 aa31.79■■■□□ 2.68
CLCNKA-201ENST00000331433 CCDC180Q9P1Z9 1646 aa27.21■■□□□ 1.95
CLCNKA-201ENST00000331433 ZCCHC6Q5VYS8 1495 aaKnown RBP26.83■■□□□ 1.89
CLCNKA-201ENST00000331433 SHROOM4Q9ULL8 1493 aa26.81■■□□□ 1.88
CLCNKA-201ENST00000331433 DCAF8L2P0C7V8 631 aa26.39■■□□□ 1.81
CLCNKA-201ENST00000331433 SUPT5HO00267 1087 aaKnown RBP26.13■■□□□ 1.77
CLCNKA-201ENST00000331433 DCAF1Q9Y4B6 1507 aa26.1■■□□□ 1.77
CLCNKA-201ENST00000331433 MYO15BQ96JP2 1530 aa25.48■■□□□ 1.67
CLCNKA-201ENST00000331433 ABCC9O60706 1549 aa25.44■■□□□ 1.66
CLCNKA-201ENST00000331433 SCRIBQ14160 1630 aa25.42■■□□□ 1.66
CLCNKA-201ENST00000331433 CHIC1Q5VXU3 224 aa25.26■■□□□ 1.63
CLCNKA-201ENST00000331433 NACADO15069 1562 aa25.22■■□□□ 1.63
CLCNKA-201ENST00000331433 RSF1Q96T23 1441 aaPredicted RBP25.02■■□□□ 1.6
CLCNKA-201ENST00000331433 RB1CC1Q8TDY2 1594 aa24.88■■□□□ 1.57
CLCNKA-201ENST00000331433 CECR2Q9BXF3 1484 aa24.81■■□□□ 1.56
CLCNKA-201ENST00000331433 MROH2BQ7Z745 1585 aa24.69■■□□□ 1.54
CLCNKA-201ENST00000331433 WIZO95785 1651 aa24.54■■□□□ 1.52
CLCNKA-201ENST00000331433 UNC13AQ9UPW8 1703 aa24.51■■□□□ 1.51
CLCNKA-201ENST00000331433 LOC105371045A0A1W2PR82 267 aa24.48■■□□□ 1.51
CLCNKA-201ENST00000331433 BAZ1AQ9NRL2 1556 aaPredicted RBP24.45■■□□□ 1.5
CLCNKA-201ENST00000331433 TRIM41Q8WV44 630 aa24.38■■□□□ 1.49
CLCNKA-201ENST00000331433 SMARCA4P51532 1647 aa24.29■■□□□ 1.48
CLCNKA-201ENST00000331433 PABPN1Q86U42 306 aaKnown RBP eCLIP24.24■■□□□ 1.47
CLCNKA-201ENST00000331433 BICRAQ9NZM4 1560 aa24.21■■□□□ 1.47
CLCNKA-201ENST00000331433 TOP2AP11388 1531 aaKnown RBP24.17■■□□□ 1.46
CLCNKA-201ENST00000331433 FAM9AQ8IZU1 332 aaPredicted RBP24.15■■□□□ 1.46
CLCNKA-201ENST00000331433 PCGF6Q9BYE7 350 aa24.11■■□□□ 1.45
CLCNKA-201ENST00000331433 EIF4G1Q04637 1599 aaKnown RBP24.08■■□□□ 1.45
CLCNKA-201ENST00000331433 CCDC88BA6NC98 1476 aa24.04■■□□□ 1.44
CLCNKA-201ENST00000331433 SMARCA2P51531 1590 aa24.02■■□□□ 1.44
CLCNKA-201ENST00000331433 EHMT2Q96KQ7 1210 aa23.94■■□□□ 1.42
CLCNKA-201ENST00000331433 HRCP23327 699 aa23.89■■□□□ 1.41
CLCNKA-201ENST00000331433 ABCC8Q09428 1581 aa23.87■■□□□ 1.41
CLCNKA-201ENST00000331433 PEG3Q9GZU2 1588 aa23.85■■□□□ 1.41
CLCNKA-201ENST00000331433 TRIM26Q12899 539 aaPredicted RBP23.74■■□□□ 1.39
CLCNKA-201ENST00000331433 ATAD2BQ9ULI0 1458 aa23.73■■□□□ 1.39
CLCNKA-201ENST00000331433 BAZ1BQ9UIG0 1483 aaKnown RBP23.65■■□□□ 1.38
CLCNKA-201ENST00000331433 SOGA1O94964 1423 aa23.58■■□□□ 1.36
CLCNKA-201ENST00000331433 WRNQ14191 1432 aaPredicted RBP eCLIP23.51■■□□□ 1.35
CLCNKA-201ENST00000331433 RUSC2Q8N2Y8 1516 aa23.47■■□□□ 1.35
CLCNKA-201ENST00000331433 PPARGC1BQ86YN6 1023 aaKnown RBP23.45■■□□□ 1.34
CLCNKA-201ENST00000331433 SYNJ1O43426 1573 aa23.42■■□□□ 1.34
CLCNKA-201ENST00000331433 EEA1Q15075 1411 aa23.41■■□□□ 1.34
CLCNKA-201ENST00000331433 CSRNP3Q8WYN3 585 aa23.4■■□□□ 1.34
CLCNKA-201ENST00000331433 NCAPD3P42695 1498 aa23.33■■□□□ 1.33
CLCNKA-201ENST00000331433 HMGXB3Q12766 1538 aa23.32■■□□□ 1.32
CLCNKA-201ENST00000331433 CEP162Q5TB80 1403 aa23.31■■□□□ 1.32
CLCNKA-201ENST00000331433 TNIKQ9UKE5 1360 aa23.3■■□□□ 1.32
CLCNKA-201ENST00000331433 UBTFP17480 764 aaKnown RBP23.26■■□□□ 1.31
CLCNKA-201ENST00000331433 GOLGA3Q08378 1498 aa23.23■■□□□ 1.31
CLCNKA-201ENST00000331433 TOP2BQ02880 1626 aa23.17■■□□□ 1.3
CLCNKA-201ENST00000331433 CEP164Q9UPV0 1460 aa23.14■■□□□ 1.29
CLCNKA-201ENST00000331433 KIF21BO75037 1637 aa23.12■■□□□ 1.29
CLCNKA-201ENST00000331433 BIVM-ERCC5R4GMW8 1640 aa23.09■■□□□ 1.29
CLCNKA-201ENST00000331433 TTBK1Q5TCY1 1321 aaPredicted RBP23.09■■□□□ 1.29
CLCNKA-201ENST00000331433 ZEB1P37275 1124 aaPredicted RBP23.06■■□□□ 1.28
CLCNKA-201ENST00000331433 CFTRP13569 1480 aa23.06■■□□□ 1.28
CLCNKA-201ENST00000331433 RAPGEF2Q9Y4G8 1499 aa23.02■■□□□ 1.28
CLCNKA-201ENST00000331433 CUX1P39880 1505 aa23.01■■□□□ 1.27
CLCNKA-201ENST00000331433 CLIP1P30622 1438 aa22.95■■□□□ 1.27
CLCNKA-201ENST00000331433 CC2D2AQ9P2K1 1620 aa22.93■■□□□ 1.26
CLCNKA-201ENST00000331433 RANGAP1P46060 587 aaPredicted RBP22.88■■□□□ 1.25
CLCNKA-201ENST00000331433 PRDM2Q13029 1718 aa22.88■■□□□ 1.25
CLCNKA-201ENST00000331433 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.87■■□□□ 1.25
CLCNKA-201ENST00000331433 CADPSQ9ULU8 1353 aa22.86■■□□□ 1.25
CLCNKA-201ENST00000331433 PRXQ9BXM0 1461 aa22.84■■□□□ 1.25
CLCNKA-201ENST00000331433 KIF27Q86VH2 1401 aa22.82■■□□□ 1.24
CLCNKA-201ENST00000331433 VPS8Q8N3P4 1428 aa22.81■■□□□ 1.24
CLCNKA-201ENST00000331433 ERICH3Q5RHP9 1530 aa22.81■■□□□ 1.24
CLCNKA-201ENST00000331433 CCER1Q8TC90 406 aaPredicted RBP22.78■■□□□ 1.24
CLCNKA-201ENST00000331433 CUX2O14529 1486 aa22.67■■□□□ 1.22
CLCNKA-201ENST00000331433 APLP2Q06481 763 aa22.67■■□□□ 1.22
CLCNKA-201ENST00000331433 FGD5Q6ZNL6 1462 aa22.65■■□□□ 1.22
CLCNKA-201ENST00000331433 FANCD2Q9BXW9 1451 aa22.64■■□□□ 1.21
CLCNKA-201ENST00000331433 ARAP1Q96P48 1450 aa22.63■■□□□ 1.21
CLCNKA-201ENST00000331433 IGF1RP08069 1367 aa22.59■■□□□ 1.21
CLCNKA-201ENST00000331433 NESP48681 1621 aa22.58■■□□□ 1.21
CLCNKA-201ENST00000331433 DNAJC5BQ9UF47 199 aa22.58■■□□□ 1.21
CLCNKA-201ENST00000331433 HNRNPUL2Q1KMD3 747 aaKnown RBP22.54■■□□□ 1.2
CLCNKA-201ENST00000331433 CARMIL1Q5VZK9 1371 aa22.49■■□□□ 1.19
CLCNKA-201ENST00000331433 ARHGAP35Q9NRY4 1499 aa22.49■■□□□ 1.19
CLCNKA-201ENST00000331433 DNMBPQ6XZF7 1577 aa22.49■■□□□ 1.19
CLCNKA-201ENST00000331433 TOPBP1Q92547 1522 aa22.46■■□□□ 1.19
CLCNKA-201ENST00000331433 RAD54L2Q9Y4B4 1467 aa22.46■■□□□ 1.19
CLCNKA-201ENST00000331433 KANK4Q5T7N3 995 aaPredicted RBP22.45■■□□□ 1.18
CLCNKA-201ENST00000331433 POLA1P09884 1462 aaPredicted RBP22.43■■□□□ 1.18
CLCNKA-201ENST00000331433 LAMC3Q9Y6N6 1575 aa22.39■■□□□ 1.17
CLCNKA-201ENST00000331433 ABCA10Q8WWZ4 1543 aa22.39■■□□□ 1.17
CLCNKA-201ENST00000331433 URB2Q14146 1524 aaKnown RBP22.34■■□□□ 1.17
CLCNKA-201ENST00000331433 PDS5BQ9NTI5 1447 aa22.25■■□□□ 1.15
CLCNKA-201ENST00000331433 RRBP1Q9P2E9 1410 aaKnown RBP22.23■■□□□ 1.15
CLCNKA-201ENST00000331433 P3H3Q8IVL6 736 aa22.22■■□□□ 1.15
CLCNKA-201ENST00000331433 WDR97A6NE52 1622 aa22.22■■□□□ 1.15
CLCNKA-201ENST00000331433 CUL7Q14999 1698 aa22.21■■□□□ 1.15
CLCNKA-201ENST00000331433 KIF21AQ7Z4S6 1674 aa22.21■■□□□ 1.15
CLCNKA-201ENST00000331433 TDRD9Q8NDG6 1382 aaKnown RBP22.19■■□□□ 1.14
CLCNKA-201ENST00000331433 TIAM1Q13009 1591 aa22.19■■□□□ 1.14
CLCNKA-201ENST00000331433 CCNB3Q8WWL7 1395 aa22.16■■□□□ 1.14
CLCNKA-201ENST00000331433 FHOD3Q2V2M9 1422 aa22.15■■□□□ 1.14
CLCNKA-201ENST00000331433 FHAD1B1AJZ9 1412 aa22.14■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms