Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.69□□□□□ -0.22
CDH12P55289 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CDH12P55289 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CDH12P55289 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC13.68□□□□□ -0.22
CDH12P55289 FAM90A12P-201ENST00000519497 2375 ntBASIC13.68□□□□□ -0.22
CDH12P55289 FAM90A24P-201ENST00000520792 2369 ntBASIC13.68□□□□□ -0.22
CDH12P55289 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 TCAF1P1-201ENST00000414990 2232 ntBASIC13.68□□□□□ -0.22
CDH12P55289 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CDH12P55289 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC13.68□□□□□ -0.22
CDH12P55289 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 MEX3B-202ENST00000558133 4333 ntBASIC13.68□□□□□ -0.22
CDH12P55289 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 MIR661-201ENST00000384842 89 ntBASIC13.68□□□□□ -0.22
CDH12P55289 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 TLE1P1-201ENST00000422965 589 ntBASIC13.68□□□□□ -0.22
CDH12P55289 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.68□□□□□ -0.22
CDH12P55289 FAM207CP-201ENST00000443486 507 ntBASIC13.68□□□□□ -0.22
CDH12P55289 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.68□□□□□ -0.22
CDH12P55289 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.68□□□□□ -0.22
CDH12P55289 API5-211ENST00000534695 560 ntTSL 5 BASIC13.68□□□□□ -0.22
CDH12P55289 ENPP7P5-201ENST00000541031 1031 ntBASIC13.68□□□□□ -0.22
CDH12P55289 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC13.68□□□□□ -0.22
CDH12P55289 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 LINC02560-201ENST00000596379 459 ntBASIC13.68□□□□□ -0.22
CDH12P55289 MIR6074-201ENST00000612054 107 ntBASIC13.68□□□□□ -0.22
CDH12P55289 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.68□□□□□ -0.22
CDH12P55289 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.68□□□□□ -0.22
CDH12P55289 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CDH12P55289 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.68□□□□□ -0.22
CDH12P55289 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.68□□□□□ -0.22
CDH12P55289 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CDH12P55289 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CDH12P55289 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH12P55289 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CDH12P55289 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 MRPL37P1-201ENST00000592451 1337 ntBASIC13.67□□□□□ -0.22
CDH12P55289 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CDH12P55289 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CDH12P55289 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.67□□□□□ -0.22
CDH12P55289 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CDH12P55289 CICP20-201ENST00000443330 2801 ntBASIC13.67□□□□□ -0.22
CDH12P55289 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.67□□□□□ -0.22
CDH12P55289 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.67□□□□□ -0.22
CDH12P55289 ACKR1-201ENST00000368121 1240 ntBASIC13.67□□□□□ -0.22
CDH12P55289 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 ACTBP8-201ENST00000403258 1108 ntBASIC13.67□□□□□ -0.22
CDH12P55289 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
CDH12P55289 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH12P55289 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms