RNA–Protein interactions for RNA: ENST00000424846.3

TPM3P9-201, Transcript of tropomyosin 3 pseudogene 9, humanhuman

TSL 1 (best) BASIC

Gene TPM3P9, Length 2,920 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3P9-201ENST00000424846 NISCHQ9Y2I1 1504 aa28.77■■■□□ 2.2
TPM3P9-201ENST00000424846 SHROOM4Q9ULL8 1493 aa25.03■■□□□ 1.6
TPM3P9-201ENST00000424846 SUPT5HO00267 1087 aaKnown RBP24.62■■□□□ 1.53
TPM3P9-201ENST00000424846 ZCCHC6Q5VYS8 1495 aaKnown RBP24.37■■□□□ 1.49
TPM3P9-201ENST00000424846 CCDC180Q9P1Z9 1646 aa24.17■■□□□ 1.46
TPM3P9-201ENST00000424846 MYO15BQ96JP2 1530 aa24.06■■□□□ 1.44
TPM3P9-201ENST00000424846 DCAF8L2P0C7V8 631 aa24.05■■□□□ 1.44
TPM3P9-201ENST00000424846 CHIC1Q5VXU3 224 aa23.97■■□□□ 1.43
TPM3P9-201ENST00000424846 HRCP23327 699 aa23.64■■□□□ 1.38
TPM3P9-201ENST00000424846 PCGF6Q9BYE7 350 aa23.57■■□□□ 1.36
TPM3P9-201ENST00000424846 DCAF1Q9Y4B6 1507 aa23.43■■□□□ 1.34
TPM3P9-201ENST00000424846 LOC105371045A0A1W2PR82 267 aa23.42■■□□□ 1.34
TPM3P9-201ENST00000424846 PPARGC1BQ86YN6 1023 aaKnown RBP23.36■■□□□ 1.33
TPM3P9-201ENST00000424846 ABCC9O60706 1549 aa23.04■■□□□ 1.28
TPM3P9-201ENST00000424846 SCRIBQ14160 1630 aa22.97■■□□□ 1.27
TPM3P9-201ENST00000424846 RSF1Q96T23 1441 aaPredicted RBP22.94■■□□□ 1.26
TPM3P9-201ENST00000424846 TRIM26Q12899 539 aaPredicted RBP22.88■■□□□ 1.25
TPM3P9-201ENST00000424846 FAM9AQ8IZU1 332 aaPredicted RBP22.8■■□□□ 1.24
TPM3P9-201ENST00000424846 RB1CC1Q8TDY2 1594 aa22.8■■□□□ 1.24
TPM3P9-201ENST00000424846 TRIM41Q8WV44 630 aa22.77■■□□□ 1.24
TPM3P9-201ENST00000424846 EHMT2Q96KQ7 1210 aa22.73■■□□□ 1.23
TPM3P9-201ENST00000424846 CECR2Q9BXF3 1484 aa22.59■■□□□ 1.21
TPM3P9-201ENST00000424846 MROH2BQ7Z745 1585 aa22.49■■□□□ 1.19
TPM3P9-201ENST00000424846 WIZO95785 1651 aa22.39■■□□□ 1.17
TPM3P9-201ENST00000424846 ZEB1P37275 1124 aaPredicted RBP22.34■■□□□ 1.17
TPM3P9-201ENST00000424846 NACADO15069 1562 aa22.32■■□□□ 1.16
TPM3P9-201ENST00000424846 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
TPM3P9-201ENST00000424846 EIF4G1Q04637 1599 aaKnown RBP22.12■■□□□ 1.13
TPM3P9-201ENST00000424846 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.11■■□□□ 1.13
TPM3P9-201ENST00000424846 SCAF1Q9H7N4 1312 aaKnown RBP22.05■■□□□ 1.12
TPM3P9-201ENST00000424846 ABCC8Q09428 1581 aa22.04■■□□□ 1.12
TPM3P9-201ENST00000424846 TTBK1Q5TCY1 1321 aaPredicted RBP22.03■■□□□ 1.12
TPM3P9-201ENST00000424846 CCDC88BA6NC98 1476 aa21.99■■□□□ 1.11
TPM3P9-201ENST00000424846 CCER1Q8TC90 406 aaPredicted RBP21.95■■□□□ 1.1
TPM3P9-201ENST00000424846 TOP2AP11388 1531 aaKnown RBP21.89■■□□□ 1.1
TPM3P9-201ENST00000424846 SOGA1O94964 1423 aa21.88■■□□□ 1.09
TPM3P9-201ENST00000424846 SMARCA4P51532 1647 aa21.85■■□□□ 1.09
TPM3P9-201ENST00000424846 SMARCA2P51531 1590 aa21.85■■□□□ 1.09
TPM3P9-201ENST00000424846 CEP162Q5TB80 1403 aa21.82■■□□□ 1.08
TPM3P9-201ENST00000424846 RUSC2Q8N2Y8 1516 aa21.82■■□□□ 1.08
TPM3P9-201ENST00000424846 UNC13AQ9UPW8 1703 aa21.76■■□□□ 1.07
TPM3P9-201ENST00000424846 WRNQ14191 1432 aaPredicted RBP eCLIP21.76■■□□□ 1.07
TPM3P9-201ENST00000424846 NEUROD1Q13562 356 aa21.7■■□□□ 1.06
TPM3P9-201ENST00000424846 UBTFP17480 764 aaKnown RBP21.69■■□□□ 1.06
TPM3P9-201ENST00000424846 TNIKQ9UKE5 1360 aa21.69■■□□□ 1.06
TPM3P9-201ENST00000424846 CSRNP3Q8WYN3 585 aa21.68■■□□□ 1.06
TPM3P9-201ENST00000424846 DIEXFQ68CQ4 756 aaKnown RBP21.66■■□□□ 1.06
TPM3P9-201ENST00000424846 PABPN1Q86U42 306 aaKnown RBP eCLIP21.66■■□□□ 1.06
TPM3P9-201ENST00000424846 ACIN1Q9UKV3 1341 aaKnown RBP21.64■■□□□ 1.06
TPM3P9-201ENST00000424846 EEA1Q15075 1411 aa21.52■■□□□ 1.04
TPM3P9-201ENST00000424846 PELP1Q8IZL8 1130 aaKnown RBP21.52■■□□□ 1.03
TPM3P9-201ENST00000424846 GOLGA3Q08378 1498 aa21.51■■□□□ 1.03
TPM3P9-201ENST00000424846 BICRAQ9NZM4 1560 aa21.48■■□□□ 1.03
TPM3P9-201ENST00000424846 GTF3C3Q9Y5Q9 886 aa21.47■■□□□ 1.03
TPM3P9-201ENST00000424846 SYNJ1O43426 1573 aa21.45■■□□□ 1.02
TPM3P9-201ENST00000424846 HNRNPUL2Q1KMD3 747 aaKnown RBP21.45■■□□□ 1.02
TPM3P9-201ENST00000424846 ZNF316A6NFI3 1004 aaPredicted RBP21.39■■□□□ 1.01
TPM3P9-201ENST00000424846 RANGAP1P46060 587 aaPredicted RBP21.38■■□□□ 1.01
TPM3P9-201ENST00000424846 CENPBP07199 599 aaPredicted RBP21.35■■□□□ 1.01
TPM3P9-201ENST00000424846 CEP164Q9UPV0 1460 aa21.34■■□□□ 1.01
TPM3P9-201ENST00000424846 CLIP1P30622 1438 aa21.34■■□□□ 1.01
TPM3P9-201ENST00000424846 PEG3Q9GZU2 1588 aa21.32■■□□□ 1
TPM3P9-201ENST00000424846 YTHDC1Q96MU7 727 aaKnown RBP21.3■■□□□ 1
TPM3P9-201ENST00000424846 RAPGEF2Q9Y4G8 1499 aa21.3■■□□□ 1
TPM3P9-201ENST00000424846 KIF21BO75037 1637 aa21.29■■□□□ 1
TPM3P9-201ENST00000424846 ATAD2BQ9ULI0 1458 aa21.25■□□□□ 0.99
TPM3P9-201ENST00000424846 MIER1Q8N108 512 aa21.25■□□□□ 0.99
TPM3P9-201ENST00000424846 VPS8Q8N3P4 1428 aa21.24■□□□□ 0.99
TPM3P9-201ENST00000424846 BAZ1BQ9UIG0 1483 aaKnown RBP21.19■□□□□ 0.98
TPM3P9-201ENST00000424846 APLP2Q06481 763 aa21.13■□□□□ 0.97
TPM3P9-201ENST00000424846 TOP2BQ02880 1626 aa21.05■□□□□ 0.96
TPM3P9-201ENST00000424846 KANK4Q5T7N3 995 aaPredicted RBP21.03■□□□□ 0.96
TPM3P9-201ENST00000424846 ARAP1Q96P48 1450 aa20.99■□□□□ 0.95
TPM3P9-201ENST00000424846 DHX57Q6P158 1386 aaKnown RBP20.96■□□□□ 0.95
TPM3P9-201ENST00000424846 PRXQ9BXM0 1461 aa20.96■□□□□ 0.95
TPM3P9-201ENST00000424846 BIVM-ERCC5R4GMW8 1640 aa20.94■□□□□ 0.94
TPM3P9-201ENST00000424846 CUX1P39880 1505 aa20.89■□□□□ 0.93
TPM3P9-201ENST00000424846 ERICH3Q5RHP9 1530 aa20.88■□□□□ 0.93
TPM3P9-201ENST00000424846 ITGAEP38570 1179 aa20.81■□□□□ 0.92
TPM3P9-201ENST00000424846 RRBP1Q9P2E9 1410 aaKnown RBP20.77■□□□□ 0.92
TPM3P9-201ENST00000424846 CLSPNQ9HAW4 1339 aa20.77■□□□□ 0.91
TPM3P9-201ENST00000424846 ARHGAP35Q9NRY4 1499 aa20.77■□□□□ 0.91
TPM3P9-201ENST00000424846 KIF27Q86VH2 1401 aa20.76■□□□□ 0.91
TPM3P9-201ENST00000424846 NCAPD3P42695 1498 aa20.72■□□□□ 0.91
TPM3P9-201ENST00000424846 CCNB3Q8WWL7 1395 aa20.71■□□□□ 0.91
TPM3P9-201ENST00000424846 HMGXB3Q12766 1538 aa20.69■□□□□ 0.9
TPM3P9-201ENST00000424846 CFTRP13569 1480 aa20.67■□□□□ 0.9
TPM3P9-201ENST00000424846 CUX2O14529 1486 aa20.64■□□□□ 0.9
TPM3P9-201ENST00000424846 KCNH8Q96L42 1107 aa20.64■□□□□ 0.89
TPM3P9-201ENST00000424846 RAB3GAP2Q9H2M9 1393 aa20.61■□□□□ 0.89
TPM3P9-201ENST00000424846 IGF1RP08069 1367 aa20.6■□□□□ 0.89
TPM3P9-201ENST00000424846 SUPT16HQ9Y5B9 1047 aaKnown RBP20.6■□□□□ 0.89
TPM3P9-201ENST00000424846 MAPKBP1O60336 1514 aa20.58■□□□□ 0.88
TPM3P9-201ENST00000424846 P3H3Q8IVL6 736 aa20.54■□□□□ 0.88
TPM3P9-201ENST00000424846 PHLDB1Q86UU1 1377 aa20.53■□□□□ 0.88
TPM3P9-201ENST00000424846 TIAM1Q13009 1591 aa20.52■□□□□ 0.88
TPM3P9-201ENST00000424846 SIN3AQ96ST3 1273 aa20.52■□□□□ 0.88
TPM3P9-201ENST00000424846 CARMIL1Q5VZK9 1371 aa20.5■□□□□ 0.87
TPM3P9-201ENST00000424846 FAM50AQ14320 339 aaKnown RBP20.47■□□□□ 0.87
TPM3P9-201ENST00000424846 FGD5Q6ZNL6 1462 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms