RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 NISCHQ9Y2I1 1504 aa24.48■■□□□ 1.51
COL6A1-201ENST00000361866 DCAF8L2P0C7V8 631 aa23.77■■□□□ 1.4
COL6A1-201ENST00000361866 SUPT5HO00267 1087 aaKnown RBP23.64■■□□□ 1.38
COL6A1-201ENST00000361866 SHROOM4Q9ULL8 1493 aa23.44■■□□□ 1.34
COL6A1-201ENST00000361866 PCGF6Q9BYE7 350 aa22.7■■□□□ 1.22
COL6A1-201ENST00000361866 EHMT2Q96KQ7 1210 aa22.62■■□□□ 1.21
COL6A1-201ENST00000361866 FAM9AQ8IZU1 332 aaPredicted RBP22.19■■□□□ 1.14
COL6A1-201ENST00000361866 HRCP23327 699 aa22.04■■□□□ 1.12
COL6A1-201ENST00000361866 PPARGC1BQ86YN6 1023 aaKnown RBP21.95■■□□□ 1.1
COL6A1-201ENST00000361866 TTBK1Q5TCY1 1321 aaPredicted RBP21.9■■□□□ 1.1
COL6A1-201ENST00000361866 CHIC1Q5VXU3 224 aa21.85■■□□□ 1.09
COL6A1-201ENST00000361866 LOC105371045A0A1W2PR82 267 aa21.83■■□□□ 1.09
COL6A1-201ENST00000361866 TRIM41Q8WV44 630 aa21.69■■□□□ 1.06
COL6A1-201ENST00000361866 ZEB1P37275 1124 aaPredicted RBP21.57■■□□□ 1.04
COL6A1-201ENST00000361866 TRIM26Q12899 539 aaPredicted RBP21.56■■□□□ 1.04
COL6A1-201ENST00000361866 CCER1Q8TC90 406 aaPredicted RBP21.55■■□□□ 1.04
COL6A1-201ENST00000361866 PELP1Q8IZL8 1130 aaKnown RBP21.5■■□□□ 1.03
COL6A1-201ENST00000361866 CENPBP07199 599 aaPredicted RBP21.34■■□□□ 1.01
COL6A1-201ENST00000361866 YTHDC1Q96MU7 727 aaKnown RBP21.29■■□□□ 1
COL6A1-201ENST00000361866 RANGAP1P46060 587 aaPredicted RBP21.28■■□□□ 1
COL6A1-201ENST00000361866 APLP2Q06481 763 aa21.23■□□□□ 0.99
COL6A1-201ENST00000361866 UBTFP17480 764 aaKnown RBP21.1■□□□□ 0.97
COL6A1-201ENST00000361866 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.09■□□□□ 0.97
COL6A1-201ENST00000361866 MYT1Q01538 1121 aa21■□□□□ 0.95
COL6A1-201ENST00000361866 MYO15BQ96JP2 1530 aa20.85■□□□□ 0.93
COL6A1-201ENST00000361866 DIEXFQ68CQ4 756 aaKnown RBP20.83■□□□□ 0.92
COL6A1-201ENST00000361866 HNRNPUL2Q1KMD3 747 aaKnown RBP20.79■□□□□ 0.92
COL6A1-201ENST00000361866 GTF3C3Q9Y5Q9 886 aa20.74■□□□□ 0.91
COL6A1-201ENST00000361866 ABCC9O60706 1549 aa20.68■□□□□ 0.9
COL6A1-201ENST00000361866 ATP1B4Q9UN42 357 aaPredicted RBP20.59■□□□□ 0.89
COL6A1-201ENST00000361866 ITGAEP38570 1179 aa20.55■□□□□ 0.88
COL6A1-201ENST00000361866 ACIN1Q9UKV3 1341 aaKnown RBP20.54■□□□□ 0.88
COL6A1-201ENST00000361866 SCAF1Q9H7N4 1312 aaKnown RBP20.54■□□□□ 0.88
COL6A1-201ENST00000361866 DCAF1Q9Y4B6 1507 aa20.53■□□□□ 0.88
COL6A1-201ENST00000361866 ZCCHC6Q5VYS8 1495 aaKnown RBP20.46■□□□□ 0.87
COL6A1-201ENST00000361866 NEUROD1Q13562 356 aa20.42■□□□□ 0.86
COL6A1-201ENST00000361866 NEFLP07196 543 aa20.39■□□□□ 0.85
COL6A1-201ENST00000361866 ERICH6Q7L0X2 663 aa20.38■□□□□ 0.85
COL6A1-201ENST00000361866 PABPN1Q86U42 306 aaKnown RBP eCLIP20.33■□□□□ 0.854e-7■■■□□ 14.9
COL6A1-201ENST00000361866 ZNF316A6NFI3 1004 aaPredicted RBP20.31■□□□□ 0.84
COL6A1-201ENST00000361866 BCANQ96GW7 911 aa20.21■□□□□ 0.83
COL6A1-201ENST00000361866 CNGB1Q14028 1251 aaPredicted RBP20.07■□□□□ 0.8
COL6A1-201ENST00000361866 CSRNP3Q8WYN3 585 aa20.06■□□□□ 0.8
COL6A1-201ENST00000361866 MIER1Q8N108 512 aa19.99■□□□□ 0.79
COL6A1-201ENST00000361866 SCRIBQ14160 1630 aa19.95■□□□□ 0.78
COL6A1-201ENST00000361866 FAM50AQ14320 339 aaKnown RBP19.92■□□□□ 0.78
COL6A1-201ENST00000361866 POLR3GLQ9BT43 218 aa19.91■□□□□ 0.78
COL6A1-201ENST00000361866 CCDC180Q9P1Z9 1646 aa19.89■□□□□ 0.77
COL6A1-201ENST00000361866 RSF1Q96T23 1441 aaPredicted RBP19.88■□□□□ 0.77
COL6A1-201ENST00000361866 FKBP8Q14318 412 aa19.71■□□□□ 0.75
COL6A1-201ENST00000361866 ANP32CO43423 234 aa19.68■□□□□ 0.74
COL6A1-201ENST00000361866 DDX10Q13206 875 aaKnown RBP19.67■□□□□ 0.74
COL6A1-201ENST00000361866 P3H3Q8IVL6 736 aa19.67■□□□□ 0.74
COL6A1-201ENST00000361866 CEP162Q5TB80 1403 aa19.62■□□□□ 0.73
COL6A1-201ENST00000361866 TRIM52Q96A61 297 aa19.6■□□□□ 0.73
COL6A1-201ENST00000361866 HIRIP3Q9BW71 556 aaPredicted RBP19.6■□□□□ 0.73
COL6A1-201ENST00000361866 CDK11AQ9UQ88 783 aaPredicted RBP19.52■□□□□ 0.72
COL6A1-201ENST00000361866 CECR2Q9BXF3 1484 aa19.48■□□□□ 0.71
COL6A1-201ENST00000361866 CLIP1P30622 1438 aa19.47■□□□□ 0.71
COL6A1-201ENST00000361866 RB1CC1Q8TDY2 1594 aa19.45■□□□□ 0.7
COL6A1-201ENST00000361866 ZNF326Q5BKZ1 582 aaKnown RBP19.43■□□□□ 0.7
COL6A1-201ENST00000361866 IRX6P78412 446 aaPredicted RBP19.42■□□□□ 0.7
COL6A1-201ENST00000361866 HNRNPUQ00839 825 aaKnown RBP eCLIP19.42■□□□□ 0.7
COL6A1-201ENST00000361866 RTL5Q5HYW3 569 aaPredicted RBP19.4■□□□□ 0.7
COL6A1-201ENST00000361866 CLSPNQ9HAW4 1339 aa19.4■□□□□ 0.7
COL6A1-201ENST00000361866 ARID3CA6NKF2 412 aa19.4■□□□□ 0.7
COL6A1-201ENST00000361866 SOGA1O94964 1423 aa19.38■□□□□ 0.69
COL6A1-201ENST00000361866 TNIKQ9UKE5 1360 aa19.37■□□□□ 0.69
COL6A1-201ENST00000361866 SUPT16HQ9Y5B9 1047 aaKnown RBP19.37■□□□□ 0.69
COL6A1-201ENST00000361866 DAXXQ9UER7 740 aaPredicted RBP19.36■□□□□ 0.69
COL6A1-201ENST00000361866 FAM9BQ8IZU0 186 aa19.29■□□□□ 0.68
COL6A1-201ENST00000361866 GOLGA3Q08378 1498 aa19.29■□□□□ 0.68
COL6A1-201ENST00000361866 TONSLQ96HA7 1378 aa19.27■□□□□ 0.67
COL6A1-201ENST00000361866 NACADO15069 1562 aa19.25■□□□□ 0.67
COL6A1-201ENST00000361866 ANP32EQ9BTT0 268 aa19.24■□□□□ 0.67
COL6A1-201ENST00000361866 SIN3AQ96ST3 1273 aa19.23■□□□□ 0.67
COL6A1-201ENST00000361866 CCDC88BA6NC98 1476 aa19.21■□□□□ 0.67
COL6A1-201ENST00000361866 WRNQ14191 1432 aaPredicted RBP eCLIP19.21■□□□□ 0.67
COL6A1-201ENST00000361866 MROH2BQ7Z745 1585 aa19.2■□□□□ 0.66
COL6A1-201ENST00000361866 ABCC8Q09428 1581 aa19.19■□□□□ 0.66
COL6A1-201ENST00000361866 SENP3-EIF4A1A0A087X0R7 540 aa19.19■□□□□ 0.66
COL6A1-201ENST00000361866 CHIC2Q9UKJ5 165 aa19.19■□□□□ 0.66
COL6A1-201ENST00000361866 EEA1Q15075 1411 aa19.19■□□□□ 0.66
COL6A1-201ENST00000361866 NPM2Q86SE8 214 aaKnown RBP19.18■□□□□ 0.66
COL6A1-201ENST00000361866 NBR1Q14596 966 aa19.16■□□□□ 0.66
COL6A1-201ENST00000361866 SALL2Q9Y467 1007 aaPredicted RBP19.12■□□□□ 0.65
COL6A1-201ENST00000361866 FBLN2P98095 1184 aa19.12■□□□□ 0.65
COL6A1-201ENST00000361866 KANK4Q5T7N3 995 aaPredicted RBP19.1■□□□□ 0.65
COL6A1-201ENST00000361866 ANP32AP39687 249 aaKnown RBP19.08■□□□□ 0.65
COL6A1-201ENST00000361866 KCNH8Q96L42 1107 aa19.08■□□□□ 0.64
COL6A1-201ENST00000361866 MRS2Q9HD23 443 aa19.08■□□□□ 0.64
COL6A1-201ENST00000361866 CEP164Q9UPV0 1460 aa19.07■□□□□ 0.64
COL6A1-201ENST00000361866 MYT1LQ9UL68 1186 aa19.06■□□□□ 0.64
COL6A1-201ENST00000361866 TSHZ2Q9NRE2 1034 aa19.06■□□□□ 0.64
COL6A1-201ENST00000361866 ZNF777Q9ULD5 760 aaPredicted RBP19.01■□□□□ 0.63
COL6A1-201ENST00000361866 SLC4A1APQ9BWU0 796 aaKnown RBP19■□□□□ 0.63
COL6A1-201ENST00000361866 RRP7BPQ9NSQ0 103 aa19■□□□□ 0.63
COL6A1-201ENST00000361866 CCDC136Q96JN2 1154 aa19■□□□□ 0.63
COL6A1-201ENST00000361866 RUSC2Q8N2Y8 1516 aa18.99■□□□□ 0.63
COL6A1-201ENST00000361866 RBM19Q9Y4C8 960 aaKnown RBP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms