RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 NISCHQ9Y2I1 1504 aa30.33■■■□□ 2.45
LIG1-202ENST00000427526 CCDC180Q9P1Z9 1646 aa26.05■■□□□ 1.76
LIG1-202ENST00000427526 ZCCHC6Q5VYS8 1495 aaKnown RBP25.53■■□□□ 1.68
LIG1-202ENST00000427526 SHROOM4Q9ULL8 1493 aa25.36■■□□□ 1.65
LIG1-202ENST00000427526 DCAF8L2P0C7V8 631 aa25.29■■□□□ 1.64
LIG1-202ENST00000427526 DCAF1Q9Y4B6 1507 aa24.91■■□□□ 1.58
LIG1-202ENST00000427526 SUPT5HO00267 1087 aaKnown RBP24.67■■□□□ 1.54
LIG1-202ENST00000427526 ABCC9O60706 1549 aa24.64■■□□□ 1.53
LIG1-202ENST00000427526 MYO15BQ96JP2 1530 aa24.43■■□□□ 1.5
LIG1-202ENST00000427526 SCRIBQ14160 1630 aa24.28■■□□□ 1.48
LIG1-202ENST00000427526 NACADO15069 1562 aa24.25■■□□□ 1.47
LIG1-202ENST00000427526 CHIC1Q5VXU3 224 aa24.12■■□□□ 1.45
LIG1-202ENST00000427526 RB1CC1Q8TDY2 1594 aa23.97■■□□□ 1.43
LIG1-202ENST00000427526 RSF1Q96T23 1441 aaPredicted RBP23.77■■□□□ 1.4
LIG1-202ENST00000427526 CECR2Q9BXF3 1484 aa23.69■■□□□ 1.38
LIG1-202ENST00000427526 MROH2BQ7Z745 1585 aa23.54■■□□□ 1.36
LIG1-202ENST00000427526 UNC13AQ9UPW8 1703 aa23.53■■□□□ 1.36
LIG1-202ENST00000427526 PABPN1Q86U42 306 aaKnown RBP eCLIP23.45■■□□□ 1.342e-6■■■■□ 25.6
LIG1-202ENST00000427526 HRCP23327 699 aa23.44■■□□□ 1.34
LIG1-202ENST00000427526 WIZO95785 1651 aa23.35■■□□□ 1.33
LIG1-202ENST00000427526 LOC105371045A0A1W2PR82 267 aa23.35■■□□□ 1.33
LIG1-202ENST00000427526 PCGF6Q9BYE7 350 aa23.34■■□□□ 1.33
LIG1-202ENST00000427526 BICRAQ9NZM4 1560 aa23.34■■□□□ 1.33
LIG1-202ENST00000427526 BAZ1AQ9NRL2 1556 aaPredicted RBP23.33■■□□□ 1.33
LIG1-202ENST00000427526 SMARCA4P51532 1647 aa23.2■■□□□ 1.3
LIG1-202ENST00000427526 TRIM41Q8WV44 630 aa23.03■■□□□ 1.28
LIG1-202ENST00000427526 TOP2AP11388 1531 aaKnown RBP23■■□□□ 1.27
LIG1-202ENST00000427526 TRIM26Q12899 539 aaPredicted RBP22.96■■□□□ 1.27
LIG1-202ENST00000427526 CCDC88BA6NC98 1476 aa22.91■■□□□ 1.26
LIG1-202ENST00000427526 PPARGC1BQ86YN6 1023 aaKnown RBP22.87■■□□□ 1.25
LIG1-202ENST00000427526 SMARCA2P51531 1590 aa22.85■■□□□ 1.25
LIG1-202ENST00000427526 PEG3Q9GZU2 1588 aa22.81■■□□□ 1.24
LIG1-202ENST00000427526 ATAD2BQ9ULI0 1458 aa22.78■■□□□ 1.24
LIG1-202ENST00000427526 EIF4G1Q04637 1599 aaKnown RBP22.77■■□□□ 1.24
LIG1-202ENST00000427526 FAM9AQ8IZU1 332 aaPredicted RBP22.76■■□□□ 1.23
LIG1-202ENST00000427526 BAZ1BQ9UIG0 1483 aaKnown RBP22.67■■□□□ 1.22
LIG1-202ENST00000427526 ABCC8Q09428 1581 aa22.6■■□□□ 1.21
LIG1-202ENST00000427526 EHMT2Q96KQ7 1210 aa22.54■■□□□ 1.2
LIG1-202ENST00000427526 ZEB1P37275 1124 aaPredicted RBP22.48■■□□□ 1.19
LIG1-202ENST00000427526 NCAPD3P42695 1498 aa22.47■■□□□ 1.19
LIG1-202ENST00000427526 HMGXB3Q12766 1538 aa22.38■■□□□ 1.17
LIG1-202ENST00000427526 WRNQ14191 1432 aaPredicted RBP eCLIP22.34■■□□□ 1.17
LIG1-202ENST00000427526 SOGA1O94964 1423 aa22.31■■□□□ 1.16
LIG1-202ENST00000427526 SYNJ1O43426 1573 aa22.23■■□□□ 1.15
LIG1-202ENST00000427526 RUSC2Q8N2Y8 1516 aa22.23■■□□□ 1.15
LIG1-202ENST00000427526 PELP1Q8IZL8 1130 aaKnown RBP22.22■■□□□ 1.15
LIG1-202ENST00000427526 CC2D2AQ9P2K1 1620 aa22.18■■□□□ 1.14
LIG1-202ENST00000427526 CSRNP3Q8WYN3 585 aa22.15■■□□□ 1.14
LIG1-202ENST00000427526 EEA1Q15075 1411 aa22.13■■□□□ 1.13
LIG1-202ENST00000427526 CFTRP13569 1480 aa22.1■■□□□ 1.13
LIG1-202ENST00000427526 TNIKQ9UKE5 1360 aa22.1■■□□□ 1.13
LIG1-202ENST00000427526 CEP162Q5TB80 1403 aa22.1■■□□□ 1.13
LIG1-202ENST00000427526 TOP2BQ02880 1626 aa22.02■■□□□ 1.11
LIG1-202ENST00000427526 CADPSQ9ULU8 1353 aa21.99■■□□□ 1.11
LIG1-202ENST00000427526 UBTFP17480 764 aaKnown RBP21.98■■□□□ 1.11
LIG1-202ENST00000427526 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.96■■□□□ 1.11
LIG1-202ENST00000427526 CUX1P39880 1505 aa21.95■■□□□ 1.1
LIG1-202ENST00000427526 GOLGA3Q08378 1498 aa21.93■■□□□ 1.1
LIG1-202ENST00000427526 BIVM-ERCC5R4GMW8 1640 aa21.93■■□□□ 1.1
LIG1-202ENST00000427526 CCER1Q8TC90 406 aaPredicted RBP21.9■■□□□ 1.1
LIG1-202ENST00000427526 CEP164Q9UPV0 1460 aa21.85■■□□□ 1.09
LIG1-202ENST00000427526 DNAJC5BQ9UF47 199 aa21.83■■□□□ 1.08
LIG1-202ENST00000427526 KIF21BO75037 1637 aa21.82■■□□□ 1.08
LIG1-202ENST00000427526 PRDM2Q13029 1718 aa21.8■■□□□ 1.08
LIG1-202ENST00000427526 TTBK1Q5TCY1 1321 aaPredicted RBP21.79■■□□□ 1.08
LIG1-202ENST00000427526 RAPGEF2Q9Y4G8 1499 aa21.79■■□□□ 1.08
LIG1-202ENST00000427526 NESP48681 1621 aa21.77■■□□□ 1.08
LIG1-202ENST00000427526 FANCD2Q9BXW9 1451 aa21.74■■□□□ 1.07
LIG1-202ENST00000427526 KIF27Q86VH2 1401 aa21.71■■□□□ 1.07
LIG1-202ENST00000427526 RANGAP1P46060 587 aaPredicted RBP21.68■■□□□ 1.06
LIG1-202ENST00000427526 CLIP1P30622 1438 aa21.67■■□□□ 1.06
LIG1-202ENST00000427526 PRXQ9BXM0 1461 aa21.66■■□□□ 1.06
LIG1-202ENST00000427526 FGD5Q6ZNL6 1462 aa21.65■■□□□ 1.06
LIG1-202ENST00000427526 MYT1Q01538 1121 aa21.63■■□□□ 1.05
LIG1-202ENST00000427526 CUX2O14529 1486 aa21.62■■□□□ 1.05
LIG1-202ENST00000427526 VPS8Q8N3P4 1428 aa21.61■■□□□ 1.05
LIG1-202ENST00000427526 SCAF1Q9H7N4 1312 aaKnown RBP21.59■■□□□ 1.05
LIG1-202ENST00000427526 ERICH3Q5RHP9 1530 aa21.57■■□□□ 1.04
LIG1-202ENST00000427526 LAMC3Q9Y6N6 1575 aa21.56■■□□□ 1.04
LIG1-202ENST00000427526 IGF1RP08069 1367 aa21.55■■□□□ 1.04
LIG1-202ENST00000427526 TOPBP1Q92547 1522 aa21.54■■□□□ 1.04
LIG1-202ENST00000427526 DIEXFQ68CQ4 756 aaKnown RBP21.53■■□□□ 1.04
LIG1-202ENST00000427526 DNMBPQ6XZF7 1577 aa21.53■■□□□ 1.04
LIG1-202ENST00000427526 RAD54L2Q9Y4B4 1467 aa21.51■■□□□ 1.03
LIG1-202ENST00000427526 POLA1P09884 1462 aaPredicted RBP21.48■■□□□ 1.03
LIG1-202ENST00000427526 PDS5BQ9NTI5 1447 aa21.47■■□□□ 1.03
LIG1-202ENST00000427526 URB2Q14146 1524 aaKnown RBP21.46■■□□□ 1.03
LIG1-202ENST00000427526 CARMIL1Q5VZK9 1371 aa21.44■■□□□ 1.02
LIG1-202ENST00000427526 HNRNPUL2Q1KMD3 747 aaKnown RBP21.42■■□□□ 1.02
LIG1-202ENST00000427526 APLP2Q06481 763 aa21.42■■□□□ 1.02
LIG1-202ENST00000427526 ABCA10Q8WWZ4 1543 aa21.4■■□□□ 1.02
LIG1-202ENST00000427526 ACIN1Q9UKV3 1341 aaKnown RBP21.4■■□□□ 1.02
LIG1-202ENST00000427526 ZNF316A6NFI3 1004 aaPredicted RBP21.39■■□□□ 1.01
LIG1-202ENST00000427526 ARAP1Q96P48 1450 aa21.36■■□□□ 1.01
LIG1-202ENST00000427526 NEUROD1Q13562 356 aa21.35■■□□□ 1.01
LIG1-202ENST00000427526 KIF21AQ7Z4S6 1674 aa21.35■■□□□ 1.01
LIG1-202ENST00000427526 TDRD9Q8NDG6 1382 aaKnown RBP21.31■■□□□ 1
LIG1-202ENST00000427526 ARHGAP35Q9NRY4 1499 aa21.29■■□□□ 1
LIG1-202ENST00000427526 CENPBP07199 599 aaPredicted RBP21.24■□□□□ 0.99
LIG1-202ENST00000427526 KANK4Q5T7N3 995 aaPredicted RBP21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms