RNA–Protein interactions for RNA: ENST00000314121.8

ZNF541-202, Transcript of zinc finger protein 541, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene ZNF541, Length 4,631 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-202ENST00000314121 NISCHQ9Y2I1 1504 aa23.99■■□□□ 1.43
ZNF541-202ENST00000314121 DCAF8L2P0C7V8 631 aa23.63■■□□□ 1.37
ZNF541-202ENST00000314121 SUPT5HO00267 1087 aaKnown RBP23.13■■□□□ 1.29
ZNF541-202ENST00000314121 SHROOM4Q9ULL8 1493 aa22.75■■□□□ 1.23
ZNF541-202ENST00000314121 PCGF6Q9BYE7 350 aa21.97■■□□□ 1.11
ZNF541-202ENST00000314121 EHMT2Q96KQ7 1210 aa21.95■■□□□ 1.1
ZNF541-202ENST00000314121 FAM9AQ8IZU1 332 aaPredicted RBP21.68■■□□□ 1.06
ZNF541-202ENST00000314121 ZEB1P37275 1124 aaPredicted RBP21.58■■□□□ 1.05
ZNF541-202ENST00000314121 PELP1Q8IZL8 1130 aaKnown RBP21.56■■□□□ 1.04
ZNF541-202ENST00000314121 APLP2Q06481 763 aa21.51■■□□□ 1.03
ZNF541-202ENST00000314121 TRIM41Q8WV44 630 aa21.46■■□□□ 1.03
ZNF541-202ENST00000314121 CENPBP07199 599 aaPredicted RBP21.3■■□□□ 1
ZNF541-202ENST00000314121 HRCP23327 699 aa21.29■■□□□ 1
ZNF541-202ENST00000314121 TTBK1Q5TCY1 1321 aaPredicted RBP21.28■■□□□ 1
ZNF541-202ENST00000314121 CCER1Q8TC90 406 aaPredicted RBP21.27■□□□□ 0.99
ZNF541-202ENST00000314121 TRIM26Q12899 539 aaPredicted RBP21.17■□□□□ 0.98
ZNF541-202ENST00000314121 CHIC1Q5VXU3 224 aa21.16■□□□□ 0.98
ZNF541-202ENST00000314121 UBTFP17480 764 aaKnown RBP20.98■□□□□ 0.95
ZNF541-202ENST00000314121 LOC105371045A0A1W2PR82 267 aa20.95■□□□□ 0.94
ZNF541-202ENST00000314121 MYT1Q01538 1121 aa20.91■□□□□ 0.94
ZNF541-202ENST00000314121 RANGAP1P46060 587 aaPredicted RBP20.89■□□□□ 0.93
ZNF541-202ENST00000314121 PPARGC1BQ86YN6 1023 aaKnown RBP20.84■□□□□ 0.93
ZNF541-202ENST00000314121 YTHDC1Q96MU7 727 aaKnown RBP20.72■□□□□ 0.91
ZNF541-202ENST00000314121 ATP1B4Q9UN42 357 aaPredicted RBP20.57■□□□□ 0.88
ZNF541-202ENST00000314121 ERICH6Q7L0X2 663 aa20.55■□□□□ 0.88
ZNF541-202ENST00000314121 NEFLP07196 543 aa20.53■□□□□ 0.88
ZNF541-202ENST00000314121 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.4■□□□□ 0.86
ZNF541-202ENST00000314121 HNRNPUL2Q1KMD3 747 aaKnown RBP20.37■□□□□ 0.85
ZNF541-202ENST00000314121 DIEXFQ68CQ4 756 aaKnown RBP20.35■□□□□ 0.85
ZNF541-202ENST00000314121 ITGAEP38570 1179 aa20.22■□□□□ 0.83
ZNF541-202ENST00000314121 GTF3C3Q9Y5Q9 886 aa20.03■□□□□ 0.8
ZNF541-202ENST00000314121 DCAF1Q9Y4B6 1507 aa20■□□□□ 0.79
ZNF541-202ENST00000314121 ZCCHC6Q5VYS8 1495 aaKnown RBP19.98■□□□□ 0.79
ZNF541-202ENST00000314121 ZNF316A6NFI3 1004 aaPredicted RBP19.93■□□□□ 0.78
ZNF541-202ENST00000314121 ACIN1Q9UKV3 1341 aaKnown RBP19.91■□□□□ 0.78
ZNF541-202ENST00000314121 ABCC9O60706 1549 aa19.88■□□□□ 0.77
ZNF541-202ENST00000314121 CSRNP3Q8WYN3 585 aa19.82■□□□□ 0.76
ZNF541-202ENST00000314121 POLR3GLQ9BT43 218 aa19.79■□□□□ 0.76
ZNF541-202ENST00000314121 FAM50AQ14320 339 aaKnown RBP19.76■□□□□ 0.75
ZNF541-202ENST00000314121 PABPN1Q86U42 306 aaKnown RBP eCLIP19.74■□□□□ 0.75
ZNF541-202ENST00000314121 NEUROD1Q13562 356 aa19.68■□□□□ 0.74
ZNF541-202ENST00000314121 DAXXQ9UER7 740 aaPredicted RBP19.66■□□□□ 0.74
ZNF541-202ENST00000314121 MYO15BQ96JP2 1530 aa19.64■□□□□ 0.73
ZNF541-202ENST00000314121 CNGB1Q14028 1251 aaPredicted RBP19.64■□□□□ 0.73
ZNF541-202ENST00000314121 ANP32CO43423 234 aa19.62■□□□□ 0.73
ZNF541-202ENST00000314121 BCANQ96GW7 911 aa19.6■□□□□ 0.73
ZNF541-202ENST00000314121 TRIM52Q96A61 297 aa19.54■□□□□ 0.72
ZNF541-202ENST00000314121 CCDC180Q9P1Z9 1646 aa19.52■□□□□ 0.72
ZNF541-202ENST00000314121 SCRIBQ14160 1630 aa19.5■□□□□ 0.71
ZNF541-202ENST00000314121 CLSPNQ9HAW4 1339 aa19.49■□□□□ 0.71
ZNF541-202ENST00000314121 RTL5Q5HYW3 569 aaPredicted RBP19.48■□□□□ 0.71
ZNF541-202ENST00000314121 SCAF1Q9H7N4 1312 aaKnown RBP19.46■□□□□ 0.71
ZNF541-202ENST00000314121 CDK11AQ9UQ88 783 aaPredicted RBP19.45■□□□□ 0.7
ZNF541-202ENST00000314121 MYT1LQ9UL68 1186 aa19.39■□□□□ 0.69
ZNF541-202ENST00000314121 RSF1Q96T23 1441 aaPredicted RBP19.34■□□□□ 0.69
ZNF541-202ENST00000314121 P3H3Q8IVL6 736 aa19.31■□□□□ 0.68
ZNF541-202ENST00000314121 MIER1Q8N108 512 aa19.26■□□□□ 0.67
ZNF541-202ENST00000314121 ZNF326Q5BKZ1 582 aaKnown RBP19.25■□□□□ 0.67
ZNF541-202ENST00000314121 FKBP8Q14318 412 aa19.24■□□□□ 0.67
ZNF541-202ENST00000314121 DDX10Q13206 875 aaKnown RBP19.22■□□□□ 0.67
ZNF541-202ENST00000314121 EEA1Q15075 1411 aa19.19■□□□□ 0.66
ZNF541-202ENST00000314121 TONSLQ96HA7 1378 aa19.19■□□□□ 0.66
ZNF541-202ENST00000314121 CLIP1P30622 1438 aa19.18■□□□□ 0.66
ZNF541-202ENST00000314121 CEP162Q5TB80 1403 aa19.16■□□□□ 0.66
ZNF541-202ENST00000314121 SLC4A1APQ9BWU0 796 aaKnown RBP19.15■□□□□ 0.66
ZNF541-202ENST00000314121 HNRNPUQ00839 825 aaKnown RBP eCLIP19.11■□□□□ 0.65
ZNF541-202ENST00000314121 GOLGA3Q08378 1498 aa19.07■□□□□ 0.64
ZNF541-202ENST00000314121 ANP32AP39687 249 aaKnown RBP19.07■□□□□ 0.64
ZNF541-202ENST00000314121 TNIKQ9UKE5 1360 aa19.07■□□□□ 0.64
ZNF541-202ENST00000314121 ARID3CA6NKF2 412 aa19.02■□□□□ 0.63
ZNF541-202ENST00000314121 RB1CC1Q8TDY2 1594 aa18.98■□□□□ 0.63
ZNF541-202ENST00000314121 FBLN2P98095 1184 aa18.96■□□□□ 0.63
ZNF541-202ENST00000314121 FAM9BQ8IZU0 186 aa18.96■□□□□ 0.63
ZNF541-202ENST00000314121 WRNQ14191 1432 aaPredicted RBP eCLIP18.95■□□□□ 0.62
ZNF541-202ENST00000314121 ZNF777Q9ULD5 760 aaPredicted RBP18.93■□□□□ 0.62
ZNF541-202ENST00000314121 CEP164Q9UPV0 1460 aa18.89■□□□□ 0.61
ZNF541-202ENST00000314121 MTUS2Q5JR59 1369 aa18.87■□□□□ 0.61
ZNF541-202ENST00000314121 HIRIP3Q9BW71 556 aaPredicted RBP18.86■□□□□ 0.61
ZNF541-202ENST00000314121 CHIC2Q9UKJ5 165 aa18.86■□□□□ 0.61
ZNF541-202ENST00000314121 NACADO15069 1562 aa18.86■□□□□ 0.61
ZNF541-202ENST00000314121 NPM2Q86SE8 214 aaKnown RBP18.86■□□□□ 0.61
ZNF541-202ENST00000314121 CANXP27824 592 aaKnown RBP18.85■□□□□ 0.61
ZNF541-202ENST00000314121 MRS2Q9HD23 443 aa18.85■□□□□ 0.61
ZNF541-202ENST00000314121 CCDC136Q96JN2 1154 aa18.83■□□□□ 0.6
ZNF541-202ENST00000314121 TMC1Q8TDI8 760 aa18.81■□□□□ 0.6
ZNF541-202ENST00000314121 CECR2Q9BXF3 1484 aa18.81■□□□□ 0.6
ZNF541-202ENST00000314121 EIF4G2P78344 907 aaKnown RBP eCLIP18.8■□□□□ 0.6
ZNF541-202ENST00000314121 BAZ1AQ9NRL2 1556 aaPredicted RBP18.77■□□□□ 0.6
ZNF541-202ENST00000314121 IRX6P78412 446 aaPredicted RBP18.75■□□□□ 0.59
ZNF541-202ENST00000314121 ZBTB47Q9UFB7 747 aaPredicted RBP18.75■□□□□ 0.59
ZNF541-202ENST00000314121 KIF27Q86VH2 1401 aa18.72■□□□□ 0.59
ZNF541-202ENST00000314121 SOGA1O94964 1423 aa18.72■□□□□ 0.59
ZNF541-202ENST00000314121 SALL2Q9Y467 1007 aaPredicted RBP18.7■□□□□ 0.58
ZNF541-202ENST00000314121 ANP32EQ9BTT0 268 aa18.69■□□□□ 0.58
ZNF541-202ENST00000314121 SUPT16HQ9Y5B9 1047 aaKnown RBP18.69■□□□□ 0.58
ZNF541-202ENST00000314121 RRP7BPQ9NSQ0 103 aa18.68■□□□□ 0.58
ZNF541-202ENST00000314121 NEFMP07197 916 aa18.67■□□□□ 0.58
ZNF541-202ENST00000314121 BAZ1BQ9UIG0 1483 aaKnown RBP18.66■□□□□ 0.58
ZNF541-202ENST00000314121 NBR1Q14596 966 aa18.65■□□□□ 0.58
ZNF541-202ENST00000314121 TSPY4P0CV99 314 aa18.64■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms