RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 NISCHQ9Y2I1 1504 aa26.6■■□□□ 1.85
TCOF1-207ENST00000504761 DCAF8L2P0C7V8 631 aa25.78■■□□□ 1.72
TCOF1-207ENST00000504761 SHROOM4Q9ULL8 1493 aa24.57■■□□□ 1.52
TCOF1-207ENST00000504761 SUPT5HO00267 1087 aaKnown RBP24.46■■□□□ 1.51
TCOF1-207ENST00000504761 EHMT2Q96KQ7 1210 aa23.34■■□□□ 1.33
TCOF1-207ENST00000504761 FAM9AQ8IZU1 332 aaPredicted RBP22.96■■□□□ 1.27
TCOF1-207ENST00000504761 ABCC9O60706 1549 aa22.77■■□□□ 1.24
TCOF1-207ENST00000504761 TRIM41Q8WV44 630 aa22.61■■□□□ 1.21
TCOF1-207ENST00000504761 TTBK1Q5TCY1 1321 aaPredicted RBP22.4■■□□□ 1.18
TCOF1-207ENST00000504761 PABPN1Q86U42 306 aaKnown RBP eCLIP22.39■■□□□ 1.17
TCOF1-207ENST00000504761 RANGAP1P46060 587 aaPredicted RBP22.37■■□□□ 1.17
TCOF1-207ENST00000504761 PCGF6Q9BYE7 350 aa22.27■■□□□ 1.16
TCOF1-207ENST00000504761 CHIC1Q5VXU3 224 aa22.22■■□□□ 1.15
TCOF1-207ENST00000504761 APLP2Q06481 763 aa22.19■■□□□ 1.14
TCOF1-207ENST00000504761 UBTFP17480 764 aaKnown RBP22.11■■□□□ 1.13
TCOF1-207ENST00000504761 ZCCHC6Q5VYS8 1495 aaKnown RBP22.09■■□□□ 1.13
TCOF1-207ENST00000504761 LOC105371045A0A1W2PR82 267 aa22.08■■□□□ 1.13
TCOF1-207ENST00000504761 PPARGC1BQ86YN6 1023 aaKnown RBP21.98■■□□□ 1.11
TCOF1-207ENST00000504761 CCDC180Q9P1Z9 1646 aa21.97■■□□□ 1.11
TCOF1-207ENST00000504761 ATP1B4Q9UN42 357 aaPredicted RBP21.88■■□□□ 1.09
TCOF1-207ENST00000504761 SCRIBQ14160 1630 aa21.81■■□□□ 1.08
TCOF1-207ENST00000504761 CCER1Q8TC90 406 aaPredicted RBP21.57■■□□□ 1.04
TCOF1-207ENST00000504761 TRIM26Q12899 539 aaPredicted RBP21.44■■□□□ 1.02
TCOF1-207ENST00000504761 ITGAEP38570 1179 aa21.3■■□□□ 1
TCOF1-207ENST00000504761 RB1CC1Q8TDY2 1594 aa21.27■■□□□ 1
TCOF1-207ENST00000504761 ZEB1P37275 1124 aaPredicted RBP21.24■□□□□ 0.99
TCOF1-207ENST00000504761 HNRNPUL2Q1KMD3 747 aaKnown RBP21.23■□□□□ 0.99
TCOF1-207ENST00000504761 RSF1Q96T23 1441 aaPredicted RBP21.2■□□□□ 0.99
TCOF1-207ENST00000504761 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.2■□□□□ 0.98
TCOF1-207ENST00000504761 NACADO15069 1562 aa21.2■□□□□ 0.98
TCOF1-207ENST00000504761 CSRNP3Q8WYN3 585 aa21.11■□□□□ 0.97
TCOF1-207ENST00000504761 DCAF1Q9Y4B6 1507 aa21.09■□□□□ 0.97
TCOF1-207ENST00000504761 HRCP23327 699 aa21.08■□□□□ 0.97
TCOF1-207ENST00000504761 CECR2Q9BXF3 1484 aa21.06■□□□□ 0.96
TCOF1-207ENST00000504761 FBLN2P98095 1184 aa20.96■□□□□ 0.95
TCOF1-207ENST00000504761 P3H3Q8IVL6 736 aa20.94■□□□□ 0.94
TCOF1-207ENST00000504761 MYO15BQ96JP2 1530 aa20.84■□□□□ 0.93
TCOF1-207ENST00000504761 FAM50AQ14320 339 aaKnown RBP20.83■□□□□ 0.92
TCOF1-207ENST00000504761 ARID3CA6NKF2 412 aa20.79■□□□□ 0.92
TCOF1-207ENST00000504761 MYT1LQ9UL68 1186 aa20.76■□□□□ 0.91
TCOF1-207ENST00000504761 YTHDC1Q96MU7 727 aaKnown RBP20.75■□□□□ 0.91
TCOF1-207ENST00000504761 MROH2BQ7Z745 1585 aa20.73■□□□□ 0.91
TCOF1-207ENST00000504761 BAZ1BQ9UIG0 1483 aaKnown RBP20.71■□□□□ 0.91
TCOF1-207ENST00000504761 BAZ1AQ9NRL2 1556 aaPredicted RBP20.71■□□□□ 0.91
TCOF1-207ENST00000504761 CENPBP07199 599 aaPredicted RBP20.61■□□□□ 0.89
TCOF1-207ENST00000504761 WRNQ14191 1432 aaPredicted RBP eCLIP20.56■□□□□ 0.88
TCOF1-207ENST00000504761 POLR3GLQ9BT43 218 aa20.51■□□□□ 0.87
TCOF1-207ENST00000504761 NEUROD1Q13562 356 aa20.51■□□□□ 0.87
TCOF1-207ENST00000504761 TRIM52Q96A61 297 aa20.51■□□□□ 0.87
TCOF1-207ENST00000504761 CNGB1Q14028 1251 aaPredicted RBP20.47■□□□□ 0.87
TCOF1-207ENST00000504761 CCDC88BA6NC98 1476 aa20.45■□□□□ 0.86
TCOF1-207ENST00000504761 WIZO95785 1651 aa20.42■□□□□ 0.86
TCOF1-207ENST00000504761 PELP1Q8IZL8 1130 aaKnown RBP20.4■□□□□ 0.86
TCOF1-207ENST00000504761 CLIP1P30622 1438 aa20.36■□□□□ 0.85
TCOF1-207ENST00000504761 SOGA1O94964 1423 aa20.36■□□□□ 0.85
TCOF1-207ENST00000504761 ZNF777Q9ULD5 760 aaPredicted RBP20.35■□□□□ 0.85
TCOF1-207ENST00000504761 DIEXFQ68CQ4 756 aaKnown RBP20.34■□□□□ 0.85
TCOF1-207ENST00000504761 ABCC8Q09428 1581 aa20.32■□□□□ 0.84
TCOF1-207ENST00000504761 CEP162Q5TB80 1403 aa20.31■□□□□ 0.84
TCOF1-207ENST00000504761 CHMP7Q8WUX9 453 aaPredicted RBP20.28■□□□□ 0.84
TCOF1-207ENST00000504761 EEA1Q15075 1411 aa20.27■□□□□ 0.84
TCOF1-207ENST00000504761 GOLGA3Q08378 1498 aa20.26■□□□□ 0.83
TCOF1-207ENST00000504761 KIF27Q86VH2 1401 aa20.24■□□□□ 0.83
TCOF1-207ENST00000504761 ZNF326Q5BKZ1 582 aaKnown RBP20.22■□□□□ 0.83
TCOF1-207ENST00000504761 CDK11AQ9UQ88 783 aaPredicted RBP20.21■□□□□ 0.83
TCOF1-207ENST00000504761 SMARCA2P51531 1590 aa20.2■□□□□ 0.82
TCOF1-207ENST00000504761 ATAD2BQ9ULI0 1458 aa20.19■□□□□ 0.82
TCOF1-207ENST00000504761 TNIKQ9UKE5 1360 aa20.17■□□□□ 0.82
TCOF1-207ENST00000504761 CHIC2Q9UKJ5 165 aa20.17■□□□□ 0.82
TCOF1-207ENST00000504761 TOP2AP11388 1531 aaKnown RBP20.16■□□□□ 0.82
TCOF1-207ENST00000504761 SMARCA4P51532 1647 aa20.14■□□□□ 0.82
TCOF1-207ENST00000504761 CEP164Q9UPV0 1460 aa20.13■□□□□ 0.81
TCOF1-207ENST00000504761 CUX2O14529 1486 aa20.1■□□□□ 0.81
TCOF1-207ENST00000504761 NEFLP07196 543 aa20.09■□□□□ 0.81
TCOF1-207ENST00000504761 MTUS2Q5JR59 1369 aa20.09■□□□□ 0.81
TCOF1-207ENST00000504761 ZNF316A6NFI3 1004 aaPredicted RBP20.07■□□□□ 0.8
TCOF1-207ENST00000504761 ERCC6Q03468 1493 aa20.06■□□□□ 0.8
TCOF1-207ENST00000504761 CARMIL1Q5VZK9 1371 aa20.03■□□□□ 0.8
TCOF1-207ENST00000504761 SLC4A1APQ9BWU0 796 aaKnown RBP20■□□□□ 0.79
TCOF1-207ENST00000504761 TDRD9Q8NDG6 1382 aaKnown RBP20■□□□□ 0.79
TCOF1-207ENST00000504761 CADPSQ9ULU8 1353 aa20■□□□□ 0.79
TCOF1-207ENST00000504761 RUSC2Q8N2Y8 1516 aa19.94■□□□□ 0.78
TCOF1-207ENST00000504761 RRP7BPQ9NSQ0 103 aa19.92■□□□□ 0.78
TCOF1-207ENST00000504761 KCNH8Q96L42 1107 aa19.92■□□□□ 0.78
TCOF1-207ENST00000504761 NPM1P06748 294 aaKnown RBP eCLIP19.9■□□□□ 0.78
TCOF1-207ENST00000504761 PDS5BQ9NTI5 1447 aa19.88■□□□□ 0.77
TCOF1-207ENST00000504761 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.86■□□□□ 0.773e-8■■■■□ 21.1
TCOF1-207ENST00000504761 TONSLQ96HA7 1378 aa19.83■□□□□ 0.77
TCOF1-207ENST00000504761 KANK4Q5T7N3 995 aaPredicted RBP19.83■□□□□ 0.77
TCOF1-207ENST00000504761 PLEKHD1A6NEE1 506 aa19.83■□□□□ 0.76
TCOF1-207ENST00000504761 TSPY4P0CV99 314 aa19.83■□□□□ 0.76
TCOF1-207ENST00000504761 TSPY10P0CW01 314 aa19.83■□□□□ 0.76
TCOF1-207ENST00000504761 ANP32CO43423 234 aa19.8■□□□□ 0.76
TCOF1-207ENST00000504761 HIRIP3Q9BW71 556 aaPredicted RBP19.79■□□□□ 0.76
TCOF1-207ENST00000504761 EIF4G1Q04637 1599 aaKnown RBP19.79■□□□□ 0.76
TCOF1-207ENST00000504761 RAPGEF2Q9Y4G8 1499 aa19.77■□□□□ 0.75
TCOF1-207ENST00000504761 DDX10Q13206 875 aaKnown RBP19.74■□□□□ 0.75
TCOF1-207ENST00000504761 CFDP1Q9UEE9 299 aaPredicted RBP19.74■□□□□ 0.75
TCOF1-207ENST00000504761 VPS8Q8N3P4 1428 aa19.73■□□□□ 0.75
TCOF1-207ENST00000504761 FANCD2Q9BXW9 1451 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms