Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
SH3RF1Q7Z6J0 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC26.22■■□□□ 1.79
SH3RF1Q7Z6J0 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SH3RF1Q7Z6J0 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SH3RF1Q7Z6J0 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SH3RF1Q7Z6J0 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SH3RF1Q7Z6J0 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
SH3RF1Q7Z6J0 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
SH3RF1Q7Z6J0 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SH3RF1Q7Z6J0 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SH3RF1Q7Z6J0 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SH3RF1Q7Z6J0 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
SH3RF1Q7Z6J0 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC26.2■■□□□ 1.78
SH3RF1Q7Z6J0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SH3RF1Q7Z6J0 AC004812.2-201ENST00000611079 2094 ntBASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 MIR5787-201ENST00000611784 55 ntBASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 AF131216.4-201ENST00000638924 1588 ntBASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SH3RF1Q7Z6J0 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
SH3RF1Q7Z6J0 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SH3RF1Q7Z6J0 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.18■■□□□ 1.78
SH3RF1Q7Z6J0 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC26.18■■□□□ 1.78
SH3RF1Q7Z6J0 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 TFPT-201ENST00000391757 774 ntTSL 5 BASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 AL136162.1-201ENST00000607711 1078 ntBASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SH3RF1Q7Z6J0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC26.16■■□□□ 1.78
SH3RF1Q7Z6J0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SH3RF1Q7Z6J0 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SH3RF1Q7Z6J0 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SH3RF1Q7Z6J0 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SH3RF1Q7Z6J0 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.15■■□□□ 1.78
SH3RF1Q7Z6J0 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC26.14■■□□□ 1.78
SH3RF1Q7Z6J0 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SH3RF1Q7Z6J0 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
SH3RF1Q7Z6J0 HYI-206ENST00000372434 1025 ntTSL 5 BASIC26.14■■□□□ 1.78
SH3RF1Q7Z6J0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC26.14■■□□□ 1.78
SH3RF1Q7Z6J0 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SH3RF1Q7Z6J0 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.77
SH3RF1Q7Z6J0 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC26.13■■□□□ 1.77
SH3RF1Q7Z6J0 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SH3RF1Q7Z6J0 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC26.13■■□□□ 1.77
SH3RF1Q7Z6J0 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SH3RF1Q7Z6J0 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SH3RF1Q7Z6J0 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SH3RF1Q7Z6J0 CLTA-206ENST00000466396 695 ntTSL 2 BASIC26.12■■□□□ 1.77
SH3RF1Q7Z6J0 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC26.12■■□□□ 1.77
SH3RF1Q7Z6J0 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC26.12■■□□□ 1.77
SH3RF1Q7Z6J0 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SH3RF1Q7Z6J0 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
SH3RF1Q7Z6J0 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SH3RF1Q7Z6J0 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
SH3RF1Q7Z6J0 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC26.11■■□□□ 1.77
SH3RF1Q7Z6J0 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SH3RF1Q7Z6J0 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SH3RF1Q7Z6J0 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
SH3RF1Q7Z6J0 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
SH3RF1Q7Z6J0 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
SH3RF1Q7Z6J0 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC26.1■■□□□ 1.77
SH3RF1Q7Z6J0 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
SH3RF1Q7Z6J0 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SH3RF1Q7Z6J0 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
SH3RF1Q7Z6J0 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SH3RF1Q7Z6J0 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SH3RF1Q7Z6J0 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
SH3RF1Q7Z6J0 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SH3RF1Q7Z6J0 RARA-203ENST00000394086 2008 ntTSL 2 BASIC26.09■■□□□ 1.77
SH3RF1Q7Z6J0 SHD-204ENST00000599689 1729 ntTSL 5 BASIC26.09■■□□□ 1.77
SH3RF1Q7Z6J0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC26.09■■□□□ 1.77
SH3RF1Q7Z6J0 AC024257.2-201ENST00000549699 147 ntBASIC26.09■■□□□ 1.77
SH3RF1Q7Z6J0 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SH3RF1Q7Z6J0 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms