Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 AC092896.1-201ENST00000465850 380 ntBASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 AC090820.1-201ENST00000519722 591 ntBASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 F11R-204ENST00000537746 1245 ntTSL 2 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 SRP14-208ENST00000560773 468 ntTSL 3 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 AC127383.1-201ENST00000444697 1800 ntBASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 AC008536.3-201ENST00000623282 1599 ntBASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 GEMIN8P4-201ENST00000380526 729 ntBASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 AC104961.1-201ENST00000427605 771 ntBASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 PFN2-212ENST00000490975 858 ntTSL 4 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 AC026412.1-206ENST00000502273 206 ntBASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 HCG18-241ENST00000602290 821 ntTSL 2 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMC1BQ8NDV3 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms