RNA–Protein interactions for RNA: ENST00000558474.1

VPS18-202, Transcript of VPS18, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS18, Length 873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS18-202ENST00000558474 NISCHQ9Y2I1 1504 aa34.79■■■■□ 3.16
VPS18-202ENST00000558474 CCDC180Q9P1Z9 1646 aa30.69■■■□□ 2.5
VPS18-202ENST00000558474 ZCCHC6Q5VYS8 1495 aaKnown RBP29.14■■■□□ 2.26
VPS18-202ENST00000558474 ABCC9O60706 1549 aa29.14■■■□□ 2.25
VPS18-202ENST00000558474 DCAF1Q9Y4B6 1507 aa28.91■■■□□ 2.22
VPS18-202ENST00000558474 MYO15BQ96JP2 1530 aa28.78■■■□□ 2.2
VPS18-202ENST00000558474 NACADO15069 1562 aa28.65■■■□□ 2.18
VPS18-202ENST00000558474 DCAF8L2P0C7V8 631 aa28.61■■■□□ 2.17
VPS18-202ENST00000558474 RB1CC1Q8TDY2 1594 aa28.49■■■□□ 2.15
VPS18-202ENST00000558474 SCRIBQ14160 1630 aa27.92■■■□□ 2.06
VPS18-202ENST00000558474 UNC13AQ9UPW8 1703 aa27.83■■■□□ 2.05
VPS18-202ENST00000558474 SHROOM4Q9ULL8 1493 aa27.76■■■□□ 2.03
VPS18-202ENST00000558474 BICRAQ9NZM4 1560 aa27.55■■■□□ 2
VPS18-202ENST00000558474 PABPN1Q86U42 306 aaKnown RBP eCLIP27.3■■□□□ 1.96
VPS18-202ENST00000558474 BAZ1AQ9NRL2 1556 aaPredicted RBP26.95■■□□□ 1.9
VPS18-202ENST00000558474 CECR2Q9BXF3 1484 aa26.93■■□□□ 1.9
VPS18-202ENST00000558474 SMARCA4P51532 1647 aa26.84■■□□□ 1.89
VPS18-202ENST00000558474 EIF4G1Q04637 1599 aaKnown RBP26.77■■□□□ 1.88
VPS18-202ENST00000558474 MROH2BQ7Z745 1585 aa26.77■■□□□ 1.88
VPS18-202ENST00000558474 RSF1Q96T23 1441 aaPredicted RBP26.74■■□□□ 1.87
VPS18-202ENST00000558474 PEG3Q9GZU2 1588 aa26.63■■□□□ 1.85
VPS18-202ENST00000558474 SMARCA2P51531 1590 aa26.54■■□□□ 1.84
VPS18-202ENST00000558474 WIZO95785 1651 aa26.54■■□□□ 1.84
VPS18-202ENST00000558474 SUPT5HO00267 1087 aaKnown RBP26.51■■□□□ 1.83
VPS18-202ENST00000558474 ATAD2BQ9ULI0 1458 aa26.49■■□□□ 1.83
VPS18-202ENST00000558474 CC2D2AQ9P2K1 1620 aa26.46■■□□□ 1.83
VPS18-202ENST00000558474 NCAPD3P42695 1498 aa26.4■■□□□ 1.82
VPS18-202ENST00000558474 HMGXB3Q12766 1538 aa26.36■■□□□ 1.81
VPS18-202ENST00000558474 TOP2AP11388 1531 aaKnown RBP26.34■■□□□ 1.81
VPS18-202ENST00000558474 BAZ1BQ9UIG0 1483 aaKnown RBP26.31■■□□□ 1.8
VPS18-202ENST00000558474 DNAJC5BQ9UF47 199 aa26.01■■□□□ 1.75
VPS18-202ENST00000558474 CCDC88BA6NC98 1476 aa25.98■■□□□ 1.75
VPS18-202ENST00000558474 CFTRP13569 1480 aa25.66■■□□□ 1.7
VPS18-202ENST00000558474 CADPSQ9ULU8 1353 aa25.64■■□□□ 1.69
VPS18-202ENST00000558474 LAMC3Q9Y6N6 1575 aa25.61■■□□□ 1.69
VPS18-202ENST00000558474 PRDM2Q13029 1718 aa25.61■■□□□ 1.69
VPS18-202ENST00000558474 NESP48681 1621 aa25.42■■□□□ 1.66
VPS18-202ENST00000558474 PDS5BQ9NTI5 1447 aa25.38■■□□□ 1.65
VPS18-202ENST00000558474 FANCD2Q9BXW9 1451 aa25.33■■□□□ 1.65
VPS18-202ENST00000558474 CEP164Q9UPV0 1460 aa25.24■■□□□ 1.63
VPS18-202ENST00000558474 CHIC1Q5VXU3 224 aa25.24■■□□□ 1.63
VPS18-202ENST00000558474 KIF21AQ7Z4S6 1674 aa25.23■■□□□ 1.63
VPS18-202ENST00000558474 ABCC8Q09428 1581 aa25.22■■□□□ 1.63
VPS18-202ENST00000558474 WRNQ14191 1432 aaPredicted RBP eCLIP25.21■■□□□ 1.63
VPS18-202ENST00000558474 BIVM-ERCC5R4GMW8 1640 aa25.13■■□□□ 1.61
VPS18-202ENST00000558474 TOP2BQ02880 1626 aa25.12■■□□□ 1.61
VPS18-202ENST00000558474 ERCC6Q03468 1493 aa25.09■■□□□ 1.61
VPS18-202ENST00000558474 TRIM41Q8WV44 630 aa25.09■■□□□ 1.61
VPS18-202ENST00000558474 SYNJ1O43426 1573 aa25.09■■□□□ 1.61
VPS18-202ENST00000558474 CUX1P39880 1505 aa25.08■■□□□ 1.61
VPS18-202ENST00000558474 DNMBPQ6XZF7 1577 aa25.08■■□□□ 1.61
VPS18-202ENST00000558474 MRC2Q9UBG0 1479 aa25.06■■□□□ 1.6
VPS18-202ENST00000558474 URB2Q14146 1524 aaKnown RBP25.02■■□□□ 1.6
VPS18-202ENST00000558474 TOPBP1Q92547 1522 aa25.01■■□□□ 1.59
VPS18-202ENST00000558474 WDR62O43379 1518 aa24.97■■□□□ 1.59
VPS18-202ENST00000558474 THOC2Q8NI27 1593 aaKnown RBP24.97■■□□□ 1.59
VPS18-202ENST00000558474 FGD5Q6ZNL6 1462 aa24.88■■□□□ 1.57
VPS18-202ENST00000558474 POLA1P09884 1462 aaPredicted RBP24.83■■□□□ 1.57
VPS18-202ENST00000558474 SOGA1O94964 1423 aa24.75■■□□□ 1.55
VPS18-202ENST00000558474 EEA1Q15075 1411 aa24.74■■□□□ 1.55
VPS18-202ENST00000558474 ABCA10Q8WWZ4 1543 aa24.72■■□□□ 1.55
VPS18-202ENST00000558474 WDR97A6NE52 1622 aa24.71■■□□□ 1.55
VPS18-202ENST00000558474 TARBP1Q13395 1621 aaKnown RBP24.71■■□□□ 1.55
VPS18-202ENST00000558474 CUX2O14529 1486 aa24.7■■□□□ 1.55
VPS18-202ENST00000558474 IFT140Q96RY7 1462 aa24.7■■□□□ 1.55
VPS18-202ENST00000558474 RAD54L2Q9Y4B4 1467 aa24.67■■□□□ 1.54
VPS18-202ENST00000558474 KIF27Q86VH2 1401 aa24.65■■□□□ 1.54
VPS18-202ENST00000558474 ABCA5Q8WWZ7 1642 aa24.56■■□□□ 1.52
VPS18-202ENST00000558474 RUSC2Q8N2Y8 1516 aa24.55■■□□□ 1.52
VPS18-202ENST00000558474 GAPVD1Q14C86 1478 aa24.5■■□□□ 1.51
VPS18-202ENST00000558474 CSRNP3Q8WYN3 585 aa24.49■■□□□ 1.51
VPS18-202ENST00000558474 ERICH3Q5RHP9 1530 aa24.47■■□□□ 1.51
VPS18-202ENST00000558474 TDRD9Q8NDG6 1382 aaKnown RBP24.46■■□□□ 1.51
VPS18-202ENST00000558474 FAM9AQ8IZU1 332 aaPredicted RBP24.44■■□□□ 1.5
VPS18-202ENST00000558474 EIF4G3O43432 1585 aaKnown RBP24.44■■□□□ 1.5
VPS18-202ENST00000558474 ZNF608Q9ULD9 1512 aaPredicted RBP24.44■■□□□ 1.5
VPS18-202ENST00000558474 PBRM1Q86U86 1689 aa24.43■■□□□ 1.5
VPS18-202ENST00000558474 IGF1RP08069 1367 aa24.42■■□□□ 1.5
VPS18-202ENST00000558474 CUL7Q14999 1698 aa24.4■■□□□ 1.5
VPS18-202ENST00000558474 AQRO60306 1485 aaKnown RBP eCLIP24.4■■□□□ 1.57e-6■□□□□ 9.8
VPS18-202ENST00000558474 GRIN2BQ13224 1484 aa24.4■■□□□ 1.5
VPS18-202ENST00000558474 KIF21BO75037 1637 aa24.39■■□□□ 1.5
VPS18-202ENST00000558474 PRXQ9BXM0 1461 aa24.36■■□□□ 1.49
VPS18-202ENST00000558474 CARMIL1Q5VZK9 1371 aa24.3■■□□□ 1.48
VPS18-202ENST00000558474 MAGI1Q96QZ7 1491 aaPredicted RBP24.29■■□□□ 1.48
VPS18-202ENST00000558474 GOLGA3Q08378 1498 aa24.27■■□□□ 1.48
VPS18-202ENST00000558474 RAPGEF2Q9Y4G8 1499 aa24.26■■□□□ 1.47
VPS18-202ENST00000558474 FHAD1B1AJZ9 1412 aa24.26■■□□□ 1.47
VPS18-202ENST00000558474 ADAMTS12P58397 1594 aa24.25■■□□□ 1.47
VPS18-202ENST00000558474 SNAPC4Q5SXM2 1469 aa24.22■■□□□ 1.47
VPS18-202ENST00000558474 SYNJ2O15056 1496 aa24.16■■□□□ 1.46
VPS18-202ENST00000558474 LOC105371045A0A1W2PR82 267 aa24.13■■□□□ 1.45
VPS18-202ENST00000558474 TNIKQ9UKE5 1360 aa24.11■■□□□ 1.45
VPS18-202ENST00000558474 GRIN2AQ12879 1464 aa24.08■■□□□ 1.45
VPS18-202ENST00000558474 UBTFP17480 764 aaKnown RBP24.07■■□□□ 1.44
VPS18-202ENST00000558474 CHMP7Q8WUX9 453 aaPredicted RBP24.04■■□□□ 1.44
VPS18-202ENST00000558474 CTTNBP2Q8WZ74 1663 aa24.04■■□□□ 1.44
VPS18-202ENST00000558474 CHD1O14646 1710 aa24■■□□□ 1.43
VPS18-202ENST00000558474 EHMT2Q96KQ7 1210 aa23.98■■□□□ 1.43
VPS18-202ENST00000558474 NUP160Q12769 1436 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 187 ms