RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 NISCHQ9Y2I1 1504 aa33.87■■■■□ 3.01
LINC00339-208ENST00000634934 CCDC180Q9P1Z9 1646 aa30.05■■■□□ 2.4
LINC00339-208ENST00000634934 ABCC9O60706 1549 aa29.35■■■□□ 2.29
LINC00339-208ENST00000634934 ZCCHC6Q5VYS8 1495 aaKnown RBP28.32■■■□□ 2.12
LINC00339-208ENST00000634934 DCAF8L2P0C7V8 631 aa28.29■■■□□ 2.12
LINC00339-208ENST00000634934 RB1CC1Q8TDY2 1594 aa28.22■■■□□ 2.11
LINC00339-208ENST00000634934 NACADO15069 1562 aa28.19■■■□□ 2.1
LINC00339-208ENST00000634934 MYO15BQ96JP2 1530 aa28.02■■■□□ 2.08
LINC00339-208ENST00000634934 DCAF1Q9Y4B6 1507 aa28■■■□□ 2.07
LINC00339-208ENST00000634934 UNC13AQ9UPW8 1703 aa27.7■■■□□ 2.03
LINC00339-208ENST00000634934 SCRIBQ14160 1630 aa27.52■■■□□ 2
LINC00339-208ENST00000634934 PABPN1Q86U42 306 aaKnown RBP eCLIP27.45■■□□□ 1.98
LINC00339-208ENST00000634934 BICRAQ9NZM4 1560 aa27.42■■□□□ 1.98
LINC00339-208ENST00000634934 SHROOM4Q9ULL8 1493 aa27.23■■□□□ 1.95
LINC00339-208ENST00000634934 DNAJC5BQ9UF47 199 aa26.84■■□□□ 1.89
LINC00339-208ENST00000634934 EIF4G1Q04637 1599 aaKnown RBP26.67■■□□□ 1.86
LINC00339-208ENST00000634934 CC2D2AQ9P2K1 1620 aa26.55■■□□□ 1.84
LINC00339-208ENST00000634934 CECR2Q9BXF3 1484 aa26.44■■□□□ 1.82
LINC00339-208ENST00000634934 SMARCA4P51532 1647 aa26.29■■□□□ 1.8
LINC00339-208ENST00000634934 BAZ1AQ9NRL2 1556 aaPredicted RBP26.23■■□□□ 1.79
LINC00339-208ENST00000634934 MROH2BQ7Z745 1585 aa26.15■■□□□ 1.78
LINC00339-208ENST00000634934 ATAD2BQ9ULI0 1458 aa26.08■■□□□ 1.77
LINC00339-208ENST00000634934 RSF1Q96T23 1441 aaPredicted RBP26.04■■□□□ 1.76
LINC00339-208ENST00000634934 SMARCA2P51531 1590 aa26.02■■□□□ 1.76
LINC00339-208ENST00000634934 NCAPD3P42695 1498 aa26.01■■□□□ 1.75
LINC00339-208ENST00000634934 PEG3Q9GZU2 1588 aa25.98■■□□□ 1.75
LINC00339-208ENST00000634934 WIZO95785 1651 aa25.92■■□□□ 1.74
LINC00339-208ENST00000634934 HMGXB3Q12766 1538 aa25.91■■□□□ 1.74
LINC00339-208ENST00000634934 SUPT5HO00267 1087 aaKnown RBP25.91■■□□□ 1.74
LINC00339-208ENST00000634934 BAZ1BQ9UIG0 1483 aaKnown RBP25.88■■□□□ 1.73
LINC00339-208ENST00000634934 TOP2AP11388 1531 aaKnown RBP25.62■■□□□ 1.69
LINC00339-208ENST00000634934 NESP48681 1621 aa25.46■■□□□ 1.67
LINC00339-208ENST00000634934 CCDC88BA6NC98 1476 aa25.35■■□□□ 1.65
LINC00339-208ENST00000634934 LAMC3Q9Y6N6 1575 aa25.32■■□□□ 1.64
LINC00339-208ENST00000634934 CADPSQ9ULU8 1353 aa25.27■■□□□ 1.64
LINC00339-208ENST00000634934 ERCC6Q03468 1493 aa25.24■■□□□ 1.63
LINC00339-208ENST00000634934 KIF21AQ7Z4S6 1674 aa25.18■■□□□ 1.62
LINC00339-208ENST00000634934 CFTRP13569 1480 aa25.16■■□□□ 1.62
LINC00339-208ENST00000634934 PDS5BQ9NTI5 1447 aa25.11■■□□□ 1.61
LINC00339-208ENST00000634934 PRDM2Q13029 1718 aa25.04■■□□□ 1.6
LINC00339-208ENST00000634934 THOC2Q8NI27 1593 aaKnown RBP25.02■■□□□ 1.6
LINC00339-208ENST00000634934 FANCD2Q9BXW9 1451 aa25.01■■□□□ 1.59
LINC00339-208ENST00000634934 CEP164Q9UPV0 1460 aa24.95■■□□□ 1.59
LINC00339-208ENST00000634934 MRC2Q9UBG0 1479 aa24.89■■□□□ 1.57
LINC00339-208ENST00000634934 CUX2O14529 1486 aa24.88■■□□□ 1.57
LINC00339-208ENST00000634934 WDR62O43379 1518 aa24.82■■□□□ 1.56
LINC00339-208ENST00000634934 URB2Q14146 1524 aaKnown RBP24.79■■□□□ 1.56
LINC00339-208ENST00000634934 TOPBP1Q92547 1522 aa24.63■■□□□ 1.53
LINC00339-208ENST00000634934 DNMBPQ6XZF7 1577 aa24.61■■□□□ 1.53
LINC00339-208ENST00000634934 ABCC8Q09428 1581 aa24.6■■□□□ 1.53
LINC00339-208ENST00000634934 WRNQ14191 1432 aaPredicted RBP eCLIP24.55■■□□□ 1.52
LINC00339-208ENST00000634934 CUX1P39880 1505 aa24.52■■□□□ 1.52
LINC00339-208ENST00000634934 CHIC1Q5VXU3 224 aa24.45■■□□□ 1.5
LINC00339-208ENST00000634934 POLA1P09884 1462 aaPredicted RBP24.44■■□□□ 1.5
LINC00339-208ENST00000634934 SYNJ1O43426 1573 aa24.43■■□□□ 1.5
LINC00339-208ENST00000634934 TRIM41Q8WV44 630 aa24.41■■□□□ 1.5
LINC00339-208ENST00000634934 FGD5Q6ZNL6 1462 aa24.41■■□□□ 1.5
LINC00339-208ENST00000634934 IFT140Q96RY7 1462 aa24.41■■□□□ 1.5
LINC00339-208ENST00000634934 TOP2BQ02880 1626 aa24.39■■□□□ 1.49
LINC00339-208ENST00000634934 TARBP1Q13395 1621 aaKnown RBP24.38■■□□□ 1.49
LINC00339-208ENST00000634934 ZNF608Q9ULD9 1512 aaPredicted RBP24.37■■□□□ 1.49
LINC00339-208ENST00000634934 RAD54L2Q9Y4B4 1467 aa24.37■■□□□ 1.49
LINC00339-208ENST00000634934 BIVM-ERCC5R4GMW8 1640 aa24.35■■□□□ 1.49
LINC00339-208ENST00000634934 SOGA1O94964 1423 aa24.31■■□□□ 1.48
LINC00339-208ENST00000634934 EIF4G3O43432 1585 aaKnown RBP24.28■■□□□ 1.48
LINC00339-208ENST00000634934 WDR97A6NE52 1622 aa24.23■■□□□ 1.47
LINC00339-208ENST00000634934 AQRO60306 1485 aaKnown RBP eCLIP24.23■■□□□ 1.47
LINC00339-208ENST00000634934 TDRD9Q8NDG6 1382 aaKnown RBP24.2■■□□□ 1.47
LINC00339-208ENST00000634934 ABCA10Q8WWZ4 1543 aa24.14■■□□□ 1.45
LINC00339-208ENST00000634934 ABCA5Q8WWZ7 1642 aa24.08■■□□□ 1.45
LINC00339-208ENST00000634934 PBRM1Q86U86 1689 aa24.06■■□□□ 1.44
LINC00339-208ENST00000634934 GAPVD1Q14C86 1478 aa24.04■■□□□ 1.44
LINC00339-208ENST00000634934 GRIN2BQ13224 1484 aa24■■□□□ 1.43
LINC00339-208ENST00000634934 SNAPC4Q5SXM2 1469 aa24■■□□□ 1.43
LINC00339-208ENST00000634934 KIF27Q86VH2 1401 aa24■■□□□ 1.43
LINC00339-208ENST00000634934 DNAJC5Q9H3Z4 198 aa23.98■■□□□ 1.43
LINC00339-208ENST00000634934 CHD1O14646 1710 aa23.98■■□□□ 1.43
LINC00339-208ENST00000634934 RUSC2Q8N2Y8 1516 aa23.96■■□□□ 1.43
LINC00339-208ENST00000634934 FAM9AQ8IZU1 332 aaPredicted RBP23.95■■□□□ 1.43
LINC00339-208ENST00000634934 MAGI1Q96QZ7 1491 aaPredicted RBP23.91■■□□□ 1.42
LINC00339-208ENST00000634934 FBLN2P98095 1184 aa23.9■■□□□ 1.42
LINC00339-208ENST00000634934 OSCARQ8IYS5 282 aa23.87■■□□□ 1.41
LINC00339-208ENST00000634934 EEA1Q15075 1411 aa23.86■■□□□ 1.41
LINC00339-208ENST00000634934 ERICH3Q5RHP9 1530 aa23.84■■□□□ 1.41
LINC00339-208ENST00000634934 SYNJ2O15056 1496 aa23.84■■□□□ 1.41
LINC00339-208ENST00000634934 IGF1RP08069 1367 aa23.84■■□□□ 1.41
LINC00339-208ENST00000634934 ADAMTS12P58397 1594 aa23.84■■□□□ 1.41
LINC00339-208ENST00000634934 CSRNP3Q8WYN3 585 aa23.82■■□□□ 1.4
LINC00339-208ENST00000634934 CHMP7Q8WUX9 453 aaPredicted RBP23.81■■□□□ 1.4
LINC00339-208ENST00000634934 FHAD1B1AJZ9 1412 aa23.74■■□□□ 1.39
LINC00339-208ENST00000634934 GRIN2AQ12879 1464 aa23.72■■□□□ 1.39
LINC00339-208ENST00000634934 CARMIL1Q5VZK9 1371 aa23.72■■□□□ 1.39
LINC00339-208ENST00000634934 CUL7Q14999 1698 aa23.67■■□□□ 1.38
LINC00339-208ENST00000634934 CLASP1Q7Z460 1538 aa23.66■■□□□ 1.38
LINC00339-208ENST00000634934 EHMT2Q96KQ7 1210 aa23.65■■□□□ 1.38
LINC00339-208ENST00000634934 CEP170Q5SW79 1584 aa23.64■■□□□ 1.38
LINC00339-208ENST00000634934 PRXQ9BXM0 1461 aa23.64■■□□□ 1.37
LINC00339-208ENST00000634934 RAPGEF2Q9Y4G8 1499 aa23.62■■□□□ 1.37
LINC00339-208ENST00000634934 NUP160Q12769 1436 aa23.59■■□□□ 1.37
LINC00339-208ENST00000634934 RIMBP3CA6NJZ7 1639 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms