RNA–Protein interactions for RNA: ENST00000415788.2

SGCE-202, Transcript of sarcoglycan epsilon, humanhuman

TSL 2 BASIC

Gene SGCE, Length 1,871 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-202ENST00000415788 NISCHQ9Y2I1 1504 aa34.22■■■■□ 3.07
SGCE-202ENST00000415788 CCDC180Q9P1Z9 1646 aa30.21■■■□□ 2.43
SGCE-202ENST00000415788 ABCC9O60706 1549 aa29.11■■■□□ 2.25
SGCE-202ENST00000415788 ZCCHC6Q5VYS8 1495 aaKnown RBP28.61■■■□□ 2.17
SGCE-202ENST00000415788 DCAF1Q9Y4B6 1507 aa28.38■■■□□ 2.13
SGCE-202ENST00000415788 DCAF8L2P0C7V8 631 aa28.38■■■□□ 2.13
SGCE-202ENST00000415788 MYO15BQ96JP2 1530 aa28.35■■■□□ 2.13
SGCE-202ENST00000415788 NACADO15069 1562 aa28.33■■■□□ 2.13
SGCE-202ENST00000415788 RB1CC1Q8TDY2 1594 aa28.24■■■□□ 2.11
SGCE-202ENST00000415788 SCRIBQ14160 1630 aa27.56■■■□□ 2
SGCE-202ENST00000415788 UNC13AQ9UPW8 1703 aa27.48■■□□□ 1.99
SGCE-202ENST00000415788 BICRAQ9NZM4 1560 aa27.32■■□□□ 1.96
SGCE-202ENST00000415788 PABPN1Q86U42 306 aaKnown RBP eCLIP27.27■■□□□ 1.96
SGCE-202ENST00000415788 SHROOM4Q9ULL8 1493 aa27.24■■□□□ 1.95
SGCE-202ENST00000415788 EIF4G1Q04637 1599 aaKnown RBP26.59■■□□□ 1.85
SGCE-202ENST00000415788 CECR2Q9BXF3 1484 aa26.57■■□□□ 1.84
SGCE-202ENST00000415788 BAZ1AQ9NRL2 1556 aaPredicted RBP26.51■■□□□ 1.83
SGCE-202ENST00000415788 SMARCA4P51532 1647 aa26.43■■□□□ 1.82
SGCE-202ENST00000415788 CC2D2AQ9P2K1 1620 aa26.35■■□□□ 1.81
SGCE-202ENST00000415788 MROH2BQ7Z745 1585 aa26.35■■□□□ 1.81
SGCE-202ENST00000415788 DNAJC5BQ9UF47 199 aa26.28■■□□□ 1.8
SGCE-202ENST00000415788 RSF1Q96T23 1441 aaPredicted RBP26.24■■□□□ 1.79
SGCE-202ENST00000415788 SMARCA2P51531 1590 aa26.21■■□□□ 1.79
SGCE-202ENST00000415788 ATAD2BQ9ULI0 1458 aa26.2■■□□□ 1.79
SGCE-202ENST00000415788 PEG3Q9GZU2 1588 aa26.2■■□□□ 1.79
SGCE-202ENST00000415788 NCAPD3P42695 1498 aa26.15■■□□□ 1.78
SGCE-202ENST00000415788 WIZO95785 1651 aa26.06■■□□□ 1.76
SGCE-202ENST00000415788 HMGXB3Q12766 1538 aa26.05■■□□□ 1.76
SGCE-202ENST00000415788 BAZ1BQ9UIG0 1483 aaKnown RBP26.02■■□□□ 1.76
SGCE-202ENST00000415788 SUPT5HO00267 1087 aaKnown RBP25.89■■□□□ 1.73
SGCE-202ENST00000415788 TOP2AP11388 1531 aaKnown RBP25.87■■□□□ 1.73
SGCE-202ENST00000415788 CCDC88BA6NC98 1476 aa25.55■■□□□ 1.68
SGCE-202ENST00000415788 CADPSQ9ULU8 1353 aa25.4■■□□□ 1.66
SGCE-202ENST00000415788 LAMC3Q9Y6N6 1575 aa25.37■■□□□ 1.65
SGCE-202ENST00000415788 CFTRP13569 1480 aa25.35■■□□□ 1.65
SGCE-202ENST00000415788 NESP48681 1621 aa25.31■■□□□ 1.64
SGCE-202ENST00000415788 PDS5BQ9NTI5 1447 aa25.21■■□□□ 1.63
SGCE-202ENST00000415788 PRDM2Q13029 1718 aa25.11■■□□□ 1.61
SGCE-202ENST00000415788 ERCC6Q03468 1493 aa25.1■■□□□ 1.61
SGCE-202ENST00000415788 FANCD2Q9BXW9 1451 aa25.09■■□□□ 1.61
SGCE-202ENST00000415788 CEP164Q9UPV0 1460 aa25.03■■□□□ 1.6
SGCE-202ENST00000415788 KIF21AQ7Z4S6 1674 aa24.99■■□□□ 1.59
SGCE-202ENST00000415788 MRC2Q9UBG0 1479 aa24.9■■□□□ 1.58
SGCE-202ENST00000415788 THOC2Q8NI27 1593 aaKnown RBP24.84■■□□□ 1.57
SGCE-202ENST00000415788 ABCC8Q09428 1581 aa24.82■■□□□ 1.56
SGCE-202ENST00000415788 WDR62O43379 1518 aa24.79■■□□□ 1.56
SGCE-202ENST00000415788 URB2Q14146 1524 aaKnown RBP24.79■■□□□ 1.56
SGCE-202ENST00000415788 WRNQ14191 1432 aaPredicted RBP eCLIP24.75■■□□□ 1.55
SGCE-202ENST00000415788 DNMBPQ6XZF7 1577 aa24.75■■□□□ 1.55
SGCE-202ENST00000415788 TOPBP1Q92547 1522 aa24.73■■□□□ 1.55
SGCE-202ENST00000415788 CUX1P39880 1505 aa24.7■■□□□ 1.54
SGCE-202ENST00000415788 CUX2O14529 1486 aa24.69■■□□□ 1.54
SGCE-202ENST00000415788 TOP2BQ02880 1626 aa24.62■■□□□ 1.53
SGCE-202ENST00000415788 SYNJ1O43426 1573 aa24.6■■□□□ 1.53
SGCE-202ENST00000415788 BIVM-ERCC5R4GMW8 1640 aa24.59■■□□□ 1.53
SGCE-202ENST00000415788 POLA1P09884 1462 aaPredicted RBP24.56■■□□□ 1.52
SGCE-202ENST00000415788 FGD5Q6ZNL6 1462 aa24.56■■□□□ 1.52
SGCE-202ENST00000415788 IFT140Q96RY7 1462 aa24.5■■□□□ 1.51
SGCE-202ENST00000415788 SOGA1O94964 1423 aa24.48■■□□□ 1.51
SGCE-202ENST00000415788 TRIM41Q8WV44 630 aa24.47■■□□□ 1.51
SGCE-202ENST00000415788 CHIC1Q5VXU3 224 aa24.43■■□□□ 1.5
SGCE-202ENST00000415788 RAD54L2Q9Y4B4 1467 aa24.42■■□□□ 1.5
SGCE-202ENST00000415788 TARBP1Q13395 1621 aaKnown RBP24.4■■□□□ 1.5
SGCE-202ENST00000415788 ABCA10Q8WWZ4 1543 aa24.37■■□□□ 1.49
SGCE-202ENST00000415788 WDR97A6NE52 1622 aa24.31■■□□□ 1.48
SGCE-202ENST00000415788 ZNF608Q9ULD9 1512 aaPredicted RBP24.29■■□□□ 1.48
SGCE-202ENST00000415788 TDRD9Q8NDG6 1382 aaKnown RBP24.26■■□□□ 1.47
SGCE-202ENST00000415788 AQRO60306 1485 aaKnown RBP eCLIP24.22■■□□□ 1.47
SGCE-202ENST00000415788 EIF4G3O43432 1585 aaKnown RBP24.22■■□□□ 1.47
SGCE-202ENST00000415788 KIF27Q86VH2 1401 aa24.21■■□□□ 1.47
SGCE-202ENST00000415788 GAPVD1Q14C86 1478 aa24.2■■□□□ 1.46
SGCE-202ENST00000415788 ABCA5Q8WWZ7 1642 aa24.19■■□□□ 1.46
SGCE-202ENST00000415788 GRIN2BQ13224 1484 aa24.15■■□□□ 1.46
SGCE-202ENST00000415788 ERICH3Q5RHP9 1530 aa24.09■■□□□ 1.45
SGCE-202ENST00000415788 EEA1Q15075 1411 aa24.08■■□□□ 1.44
SGCE-202ENST00000415788 PBRM1Q86U86 1689 aa24.05■■□□□ 1.44
SGCE-202ENST00000415788 MAGI1Q96QZ7 1491 aaPredicted RBP24.05■■□□□ 1.44
SGCE-202ENST00000415788 RUSC2Q8N2Y8 1516 aa24.04■■□□□ 1.44
SGCE-202ENST00000415788 IGF1RP08069 1367 aa24.03■■□□□ 1.44
SGCE-202ENST00000415788 SNAPC4Q5SXM2 1469 aa24.02■■□□□ 1.44
SGCE-202ENST00000415788 FHAD1B1AJZ9 1412 aa23.95■■□□□ 1.43
SGCE-202ENST00000415788 SYNJ2O15056 1496 aa23.94■■□□□ 1.42
SGCE-202ENST00000415788 CSRNP3Q8WYN3 585 aa23.94■■□□□ 1.42
SGCE-202ENST00000415788 ADAMTS12P58397 1594 aa23.93■■□□□ 1.42
SGCE-202ENST00000415788 CUL7Q14999 1698 aa23.93■■□□□ 1.42
SGCE-202ENST00000415788 CARMIL1Q5VZK9 1371 aa23.9■■□□□ 1.42
SGCE-202ENST00000415788 CHMP7Q8WUX9 453 aaPredicted RBP23.9■■□□□ 1.42
SGCE-202ENST00000415788 FAM9AQ8IZU1 332 aaPredicted RBP23.89■■□□□ 1.41
SGCE-202ENST00000415788 FBLN2P98095 1184 aa23.85■■□□□ 1.41
SGCE-202ENST00000415788 PRXQ9BXM0 1461 aa23.84■■□□□ 1.41
SGCE-202ENST00000415788 GRIN2AQ12879 1464 aa23.82■■□□□ 1.4
SGCE-202ENST00000415788 RAPGEF2Q9Y4G8 1499 aa23.82■■□□□ 1.4
SGCE-202ENST00000415788 CHD1O14646 1710 aa23.79■■□□□ 1.4
SGCE-202ENST00000415788 OSCARQ8IYS5 282 aa23.75■■□□□ 1.39
SGCE-202ENST00000415788 KIF21BO75037 1637 aa23.73■■□□□ 1.39
SGCE-202ENST00000415788 NUP160Q12769 1436 aa23.72■■□□□ 1.39
SGCE-202ENST00000415788 CEP170Q5SW79 1584 aa23.65■■□□□ 1.38
SGCE-202ENST00000415788 GOLGA3Q08378 1498 aa23.65■■□□□ 1.38
SGCE-202ENST00000415788 KIAA0586Q9BVV6 1533 aa23.61■■□□□ 1.37
SGCE-202ENST00000415788 CLASP1Q7Z460 1538 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms