RNA–Protein interactions for RNA: ENST00000441012.6

NR1H3-211, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NR1H3, Length 1,637 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-211ENST00000441012 NISCHQ9Y2I1 1504 aa32.66■■■□□ 2.82
NR1H3-211ENST00000441012 CCDC180Q9P1Z9 1646 aa29.41■■■□□ 2.3
NR1H3-211ENST00000441012 ABCC9O60706 1549 aa29.29■■■□□ 2.28
NR1H3-211ENST00000441012 RB1CC1Q8TDY2 1594 aa27.92■■■□□ 2.06
NR1H3-211ENST00000441012 NACADO15069 1562 aa27.71■■■□□ 2.03
NR1H3-211ENST00000441012 ZCCHC6Q5VYS8 1495 aaKnown RBP27.52■■■□□ 2
NR1H3-211ENST00000441012 UNC13AQ9UPW8 1703 aa27.47■■□□□ 1.99
NR1H3-211ENST00000441012 DCAF8L2P0C7V8 631 aa27.45■■□□□ 1.99
NR1H3-211ENST00000441012 DNAJC5BQ9UF47 199 aa27.41■■□□□ 1.98
NR1H3-211ENST00000441012 MYO15BQ96JP2 1530 aa27.32■■□□□ 1.96
NR1H3-211ENST00000441012 PABPN1Q86U42 306 aaKnown RBP eCLIP27.2■■□□□ 1.95
NR1H3-211ENST00000441012 BICRAQ9NZM4 1560 aa27.13■■□□□ 1.93
NR1H3-211ENST00000441012 DCAF1Q9Y4B6 1507 aa27.05■■□□□ 1.92
NR1H3-211ENST00000441012 SHROOM4Q9ULL8 1493 aa26.89■■□□□ 1.9
NR1H3-211ENST00000441012 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
NR1H3-211ENST00000441012 CC2D2AQ9P2K1 1620 aa26.52■■□□□ 1.84
NR1H3-211ENST00000441012 EIF4G1Q04637 1599 aaKnown RBP26.45■■□□□ 1.83
NR1H3-211ENST00000441012 CECR2Q9BXF3 1484 aa26.38■■□□□ 1.81
NR1H3-211ENST00000441012 SUPT5HO00267 1087 aaKnown RBP26.28■■□□□ 1.8
NR1H3-211ENST00000441012 CHIC1Q5VXU3 224 aa25.66■■□□□ 1.7
NR1H3-211ENST00000441012 RSF1Q96T23 1441 aaPredicted RBP25.55■■□□□ 1.68
NR1H3-211ENST00000441012 NCAPD3P42695 1498 aa25.54■■□□□ 1.68
NR1H3-211ENST00000441012 SMARCA4P51532 1647 aa25.54■■□□□ 1.68
NR1H3-211ENST00000441012 ATAD2BQ9ULI0 1458 aa25.48■■□□□ 1.67
NR1H3-211ENST00000441012 SMARCA2P51531 1590 aa25.44■■□□□ 1.66
NR1H3-211ENST00000441012 HMGXB3Q12766 1538 aa25.42■■□□□ 1.66
NR1H3-211ENST00000441012 BAZ1AQ9NRL2 1556 aaPredicted RBP25.36■■□□□ 1.65
NR1H3-211ENST00000441012 ERCC6Q03468 1493 aa25.28■■□□□ 1.64
NR1H3-211ENST00000441012 PEG3Q9GZU2 1588 aa25.27■■□□□ 1.64
NR1H3-211ENST00000441012 BAZ1BQ9UIG0 1483 aaKnown RBP25.25■■□□□ 1.63
NR1H3-211ENST00000441012 CUX2O14529 1486 aa25.24■■□□□ 1.63
NR1H3-211ENST00000441012 NESP48681 1621 aa25.19■■□□□ 1.62
NR1H3-211ENST00000441012 MROH2BQ7Z745 1585 aa25.17■■□□□ 1.62
NR1H3-211ENST00000441012 DNAJC5Q9H3Z4 198 aa25.15■■□□□ 1.62
NR1H3-211ENST00000441012 LAMC3Q9Y6N6 1575 aa25.03■■□□□ 1.6
NR1H3-211ENST00000441012 THOC2Q8NI27 1593 aaKnown RBP25■■□□□ 1.59
NR1H3-211ENST00000441012 KIF21AQ7Z4S6 1674 aa24.98■■□□□ 1.59
NR1H3-211ENST00000441012 WIZO95785 1651 aa24.94■■□□□ 1.58
NR1H3-211ENST00000441012 PDS5BQ9NTI5 1447 aa24.8■■□□□ 1.56
NR1H3-211ENST00000441012 TOP2AP11388 1531 aaKnown RBP24.78■■□□□ 1.56
NR1H3-211ENST00000441012 CADPSQ9ULU8 1353 aa24.74■■□□□ 1.55
NR1H3-211ENST00000441012 TRIM41Q8WV44 630 aa24.73■■□□□ 1.55
NR1H3-211ENST00000441012 MRC2Q9UBG0 1479 aa24.63■■□□□ 1.53
NR1H3-211ENST00000441012 WDR62O43379 1518 aa24.61■■□□□ 1.53
NR1H3-211ENST00000441012 LOC105371045A0A1W2PR82 267 aa24.61■■□□□ 1.53
NR1H3-211ENST00000441012 CEP164Q9UPV0 1460 aa24.54■■□□□ 1.52
NR1H3-211ENST00000441012 CCDC88BA6NC98 1476 aa24.52■■□□□ 1.52
NR1H3-211ENST00000441012 CFTRP13569 1480 aa24.5■■□□□ 1.51
NR1H3-211ENST00000441012 FANCD2Q9BXW9 1451 aa24.5■■□□□ 1.51
NR1H3-211ENST00000441012 PRDM2Q13029 1718 aa24.47■■□□□ 1.51
NR1H3-211ENST00000441012 URB2Q14146 1524 aaKnown RBP24.32■■□□□ 1.48
NR1H3-211ENST00000441012 HRCP23327 699 aa24.27■■□□□ 1.48
NR1H3-211ENST00000441012 PCGF6Q9BYE7 350 aa24.25■■□□□ 1.47
NR1H3-211ENST00000441012 TRIM26Q12899 539 aaPredicted RBP24.2■■□□□ 1.46
NR1H3-211ENST00000441012 FAM9AQ8IZU1 332 aaPredicted RBP24.18■■□□□ 1.46
NR1H3-211ENST00000441012 EEA1Q15075 1411 aa24.16■■□□□ 1.46
NR1H3-211ENST00000441012 ABCC8Q09428 1581 aa24.14■■□□□ 1.46
NR1H3-211ENST00000441012 TOPBP1Q92547 1522 aa24.06■■□□□ 1.44
NR1H3-211ENST00000441012 IFT140Q96RY7 1462 aa24.04■■□□□ 1.44
NR1H3-211ENST00000441012 ZNF608Q9ULD9 1512 aaPredicted RBP24.02■■□□□ 1.44
NR1H3-211ENST00000441012 WRNQ14191 1432 aaPredicted RBP eCLIP24.01■■□□□ 1.43
NR1H3-211ENST00000441012 OSCARQ8IYS5 282 aa24.01■■□□□ 1.43
NR1H3-211ENST00000441012 DNMBPQ6XZF7 1577 aa24■■□□□ 1.43
NR1H3-211ENST00000441012 EIF4G3O43432 1585 aaKnown RBP23.95■■□□□ 1.42
NR1H3-211ENST00000441012 SOGA1O94964 1423 aa23.9■■□□□ 1.42
NR1H3-211ENST00000441012 TARBP1Q13395 1621 aaKnown RBP23.89■■□□□ 1.42
NR1H3-211ENST00000441012 TNIKQ9UKE5 1360 aa23.89■■□□□ 1.41
NR1H3-211ENST00000441012 CSRNP3Q8WYN3 585 aa23.87■■□□□ 1.41
NR1H3-211ENST00000441012 RIMBP3CA6NJZ7 1639 aa23.85■■□□□ 1.41
NR1H3-211ENST00000441012 RIMBP3BA6NNM3 1639 aa23.85■■□□□ 1.41
NR1H3-211ENST00000441012 RIMBP3Q9UFD9 1639 aa23.85■■□□□ 1.41
NR1H3-211ENST00000441012 CHD1O14646 1710 aa23.84■■□□□ 1.41
NR1H3-211ENST00000441012 SYNJ1O43426 1573 aa23.83■■□□□ 1.41
NR1H3-211ENST00000441012 POLA1P09884 1462 aaPredicted RBP23.81■■□□□ 1.4
NR1H3-211ENST00000441012 AQRO60306 1485 aaKnown RBP eCLIP23.77■■□□□ 1.49e-8■■■■□ 21.2
NR1H3-211ENST00000441012 GOLGA3Q08378 1498 aa23.77■■□□□ 1.4
NR1H3-211ENST00000441012 TOP2BQ02880 1626 aa23.74■■□□□ 1.39
NR1H3-211ENST00000441012 RUSC2Q8N2Y8 1516 aa23.73■■□□□ 1.39
NR1H3-211ENST00000441012 KIF21BO75037 1637 aa23.73■■□□□ 1.39
NR1H3-211ENST00000441012 CEP162Q5TB80 1403 aa23.73■■□□□ 1.39
NR1H3-211ENST00000441012 ARHGEF11O15085 1522 aa23.73■■□□□ 1.39
NR1H3-211ENST00000441012 RAD54L2Q9Y4B4 1467 aa23.72■■□□□ 1.39
NR1H3-211ENST00000441012 BIVM-ERCC5R4GMW8 1640 aa23.7■■□□□ 1.38
NR1H3-211ENST00000441012 ZEB1P37275 1124 aaPredicted RBP23.7■■□□□ 1.38
NR1H3-211ENST00000441012 EHMT2Q96KQ7 1210 aa23.7■■□□□ 1.38
NR1H3-211ENST00000441012 FGD5Q6ZNL6 1462 aa23.67■■□□□ 1.38
NR1H3-211ENST00000441012 CUX1P39880 1505 aa23.66■■□□□ 1.38
NR1H3-211ENST00000441012 WDR97A6NE52 1622 aa23.64■■□□□ 1.37
NR1H3-211ENST00000441012 TDRD9Q8NDG6 1382 aaKnown RBP23.6■■□□□ 1.37
NR1H3-211ENST00000441012 FBLN2P98095 1184 aa23.56■■□□□ 1.36
NR1H3-211ENST00000441012 SNAPC4Q5SXM2 1469 aa23.55■■□□□ 1.36
NR1H3-211ENST00000441012 UBTFP17480 764 aaKnown RBP23.54■■□□□ 1.36
NR1H3-211ENST00000441012 PBRM1Q86U86 1689 aa23.53■■□□□ 1.36
NR1H3-211ENST00000441012 ARAP1Q96P48 1450 aa23.49■■□□□ 1.35
NR1H3-211ENST00000441012 MAGI1Q96QZ7 1491 aaPredicted RBP23.49■■□□□ 1.35
NR1H3-211ENST00000441012 CLASP1Q7Z460 1538 aa23.47■■□□□ 1.35
NR1H3-211ENST00000441012 GRIN2BQ13224 1484 aa23.47■■□□□ 1.35
NR1H3-211ENST00000441012 ERICH3Q5RHP9 1530 aa23.46■■□□□ 1.35
NR1H3-211ENST00000441012 CYB5RLQ6IPT4 315 aa23.45■■□□□ 1.34
NR1H3-211ENST00000441012 ABCA5Q8WWZ7 1642 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 162 ms