RNA–Protein interactions for RNA: ENST00000308127.8

SSH3-201, Transcript of slingshot protein phosphatase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSH3, Length 2,871 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH3-201ENST00000308127 NISCHQ9Y2I1 1504 aa33.11■■■□□ 2.89
SSH3-201ENST00000308127 SHROOM4Q9ULL8 1493 aa29.29■■■□□ 2.28
SSH3-201ENST00000308127 SUPT5HO00267 1087 aaKnown RBP28.85■■■□□ 2.21
SSH3-201ENST00000308127 DCAF8L2P0C7V8 631 aa28.26■■■□□ 2.11
SSH3-201ENST00000308127 ZCCHC6Q5VYS8 1495 aaKnown RBP28.01■■■□□ 2.07
SSH3-201ENST00000308127 MYO15BQ96JP2 1530 aa27.93■■■□□ 2.06
SSH3-201ENST00000308127 CHIC1Q5VXU3 224 aa27.88■■■□□ 2.05
SSH3-201ENST00000308127 PCGF6Q9BYE7 350 aa27.65■■■□□ 2.02
SSH3-201ENST00000308127 CCDC180Q9P1Z9 1646 aa27.61■■■□□ 2.01
SSH3-201ENST00000308127 HRCP23327 699 aa27.57■■■□□ 2
SSH3-201ENST00000308127 PPARGC1BQ86YN6 1023 aaKnown RBP27.42■■□□□ 1.98
SSH3-201ENST00000308127 LOC105371045A0A1W2PR82 267 aa27.4■■□□□ 1.98
SSH3-201ENST00000308127 EHMT2Q96KQ7 1210 aa26.87■■□□□ 1.89
SSH3-201ENST00000308127 DCAF1Q9Y4B6 1507 aa26.8■■□□□ 1.88
SSH3-201ENST00000308127 FAM9AQ8IZU1 332 aaPredicted RBP26.79■■□□□ 1.88
SSH3-201ENST00000308127 TRIM26Q12899 539 aaPredicted RBP26.67■■□□□ 1.86
SSH3-201ENST00000308127 TRIM41Q8WV44 630 aa26.58■■□□□ 1.85
SSH3-201ENST00000308127 SCRIBQ14160 1630 aa26.57■■□□□ 1.84
SSH3-201ENST00000308127 RSF1Q96T23 1441 aaPredicted RBP26.49■■□□□ 1.83
SSH3-201ENST00000308127 ABCC9O60706 1549 aa26.48■■□□□ 1.83
SSH3-201ENST00000308127 RB1CC1Q8TDY2 1594 aa26.34■■□□□ 1.81
SSH3-201ENST00000308127 CECR2Q9BXF3 1484 aa26.12■■□□□ 1.77
SSH3-201ENST00000308127 TTBK1Q5TCY1 1321 aaPredicted RBP26.03■■□□□ 1.76
SSH3-201ENST00000308127 ZEB1P37275 1124 aaPredicted RBP26.01■■□□□ 1.76
SSH3-201ENST00000308127 MROH2BQ7Z745 1585 aa25.95■■□□□ 1.74
SSH3-201ENST00000308127 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.92■■□□□ 1.74
SSH3-201ENST00000308127 WIZO95785 1651 aa25.84■■□□□ 1.73
SSH3-201ENST00000308127 SCAF1Q9H7N4 1312 aaKnown RBP25.81■■□□□ 1.72
SSH3-201ENST00000308127 CCER1Q8TC90 406 aaPredicted RBP25.74■■□□□ 1.71
SSH3-201ENST00000308127 NACADO15069 1562 aa25.59■■□□□ 1.69
SSH3-201ENST00000308127 ABCC8Q09428 1581 aa25.55■■□□□ 1.68
SSH3-201ENST00000308127 CCDC88BA6NC98 1476 aa25.47■■□□□ 1.67
SSH3-201ENST00000308127 BAZ1AQ9NRL2 1556 aaPredicted RBP25.42■■□□□ 1.66
SSH3-201ENST00000308127 NEUROD1Q13562 356 aa25.41■■□□□ 1.66
SSH3-201ENST00000308127 SOGA1O94964 1423 aa25.39■■□□□ 1.66
SSH3-201ENST00000308127 UBTFP17480 764 aaKnown RBP25.38■■□□□ 1.65
SSH3-201ENST00000308127 DIEXFQ68CQ4 756 aaKnown RBP25.34■■□□□ 1.65
SSH3-201ENST00000308127 EIF4G1Q04637 1599 aaKnown RBP25.34■■□□□ 1.65
SSH3-201ENST00000308127 CEP162Q5TB80 1403 aa25.31■■□□□ 1.64
SSH3-201ENST00000308127 RUSC2Q8N2Y8 1516 aa25.3■■□□□ 1.64
SSH3-201ENST00000308127 ACIN1Q9UKV3 1341 aaKnown RBP25.29■■□□□ 1.64
SSH3-201ENST00000308127 PABPN1Q86U42 306 aaKnown RBP eCLIP25.26■■□□□ 1.63
SSH3-201ENST00000308127 RANGAP1P46060 587 aaPredicted RBP25.23■■□□□ 1.63
SSH3-201ENST00000308127 GTF3C3Q9Y5Q9 886 aa25.19■■□□□ 1.62
SSH3-201ENST00000308127 CSRNP3Q8WYN3 585 aa25.19■■□□□ 1.62
SSH3-201ENST00000308127 TOP2AP11388 1531 aaKnown RBP25.18■■□□□ 1.62
SSH3-201ENST00000308127 SMARCA2P51531 1590 aa25.16■■□□□ 1.62
SSH3-201ENST00000308127 HNRNPUL2Q1KMD3 747 aaKnown RBP25.15■■□□□ 1.62
SSH3-201ENST00000308127 YTHDC1Q96MU7 727 aaKnown RBP25.15■■□□□ 1.62
SSH3-201ENST00000308127 PELP1Q8IZL8 1130 aaKnown RBP25.14■■□□□ 1.61
SSH3-201ENST00000308127 SMARCA4P51532 1647 aa25.13■■□□□ 1.61
SSH3-201ENST00000308127 WRNQ14191 1432 aaPredicted RBP eCLIP25.07■■□□□ 1.6
SSH3-201ENST00000308127 TNIKQ9UKE5 1360 aa25.07■■□□□ 1.6
SSH3-201ENST00000308127 CENPBP07199 599 aaPredicted RBP25.01■■□□□ 1.59
SSH3-201ENST00000308127 ZNF316A6NFI3 1004 aaPredicted RBP24.95■■□□□ 1.59
SSH3-201ENST00000308127 UNC13AQ9UPW8 1703 aa24.92■■□□□ 1.58
SSH3-201ENST00000308127 GOLGA3Q08378 1498 aa24.89■■□□□ 1.57
SSH3-201ENST00000308127 MIER1Q8N108 512 aa24.84■■□□□ 1.57
SSH3-201ENST00000308127 EEA1Q15075 1411 aa24.8■■□□□ 1.56
SSH3-201ENST00000308127 CLIP1P30622 1438 aa24.76■■□□□ 1.55
SSH3-201ENST00000308127 SYNJ1O43426 1573 aa24.75■■□□□ 1.55
SSH3-201ENST00000308127 APLP2Q06481 763 aa24.75■■□□□ 1.55
SSH3-201ENST00000308127 RAPGEF2Q9Y4G8 1499 aa24.67■■□□□ 1.54
SSH3-201ENST00000308127 CEP164Q9UPV0 1460 aa24.67■■□□□ 1.54
SSH3-201ENST00000308127 BICRAQ9NZM4 1560 aa24.62■■□□□ 1.53
SSH3-201ENST00000308127 VPS8Q8N3P4 1428 aa24.58■■□□□ 1.53
SSH3-201ENST00000308127 KIF21BO75037 1637 aa24.49■■□□□ 1.51
SSH3-201ENST00000308127 BAZ1BQ9UIG0 1483 aaKnown RBP24.49■■□□□ 1.51
SSH3-201ENST00000308127 ATAD2BQ9ULI0 1458 aa24.49■■□□□ 1.51
SSH3-201ENST00000308127 ITGAEP38570 1179 aa24.48■■□□□ 1.51
SSH3-201ENST00000308127 KANK4Q5T7N3 995 aaPredicted RBP24.48■■□□□ 1.51
SSH3-201ENST00000308127 PEG3Q9GZU2 1588 aa24.37■■□□□ 1.49
SSH3-201ENST00000308127 DHX57Q6P158 1386 aaKnown RBP24.32■■□□□ 1.48
SSH3-201ENST00000308127 ARAP1Q96P48 1450 aa24.25■■□□□ 1.47
SSH3-201ENST00000308127 TOP2BQ02880 1626 aa24.21■■□□□ 1.47
SSH3-201ENST00000308127 KCNH8Q96L42 1107 aa24.17■■□□□ 1.46
SSH3-201ENST00000308127 PRXQ9BXM0 1461 aa24.14■■□□□ 1.46
SSH3-201ENST00000308127 CUX1P39880 1505 aa24.08■■□□□ 1.45
SSH3-201ENST00000308127 ATP1B4Q9UN42 357 aaPredicted RBP24.08■■□□□ 1.44
SSH3-201ENST00000308127 SUPT16HQ9Y5B9 1047 aaKnown RBP24.07■■□□□ 1.44
SSH3-201ENST00000308127 P3H3Q8IVL6 736 aa24.06■■□□□ 1.44
SSH3-201ENST00000308127 CCNB3Q8WWL7 1395 aa24.04■■□□□ 1.44
SSH3-201ENST00000308127 KIF27Q86VH2 1401 aa24.03■■□□□ 1.44
SSH3-201ENST00000308127 BIVM-ERCC5R4GMW8 1640 aa24.02■■□□□ 1.44
SSH3-201ENST00000308127 HIRIP3Q9BW71 556 aaPredicted RBP24.01■■□□□ 1.43
SSH3-201ENST00000308127 ERICH3Q5RHP9 1530 aa24.01■■□□□ 1.43
SSH3-201ENST00000308127 CLSPNQ9HAW4 1339 aa24■■□□□ 1.43
SSH3-201ENST00000308127 ARHGAP35Q9NRY4 1499 aa24■■□□□ 1.43
SSH3-201ENST00000308127 SIN3AQ96ST3 1273 aa23.98■■□□□ 1.43
SSH3-201ENST00000308127 FAM50AQ14320 339 aaKnown RBP23.98■■□□□ 1.43
SSH3-201ENST00000308127 RRBP1Q9P2E9 1410 aaKnown RBP23.98■■□□□ 1.43
SSH3-201ENST00000308127 BCANQ96GW7 911 aa23.97■■□□□ 1.43
SSH3-201ENST00000308127 RAB3GAP2Q9H2M9 1393 aa23.96■■□□□ 1.43
SSH3-201ENST00000308127 DDX10Q13206 875 aaKnown RBP23.92■■□□□ 1.42
SSH3-201ENST00000308127 CUX2O14529 1486 aa23.88■■□□□ 1.41
SSH3-201ENST00000308127 IGF1RP08069 1367 aa23.82■■□□□ 1.4
SSH3-201ENST00000308127 PHLDB1Q86UU1 1377 aa23.81■■□□□ 1.4
SSH3-201ENST00000308127 NCAPD3P42695 1498 aa23.8■■□□□ 1.4
SSH3-201ENST00000308127 MAPKBP1O60336 1514 aa23.79■■□□□ 1.4
SSH3-201ENST00000308127 CFTRP13569 1480 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms