Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SERBP1P3-201ENST00000459980 809 ntBASIC12.37□□□□□ -0.43
HOXA1P49639 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA1P49639 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA1P49639 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 PUS1-205ENST00000535067 838 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA1P49639 CCND1-203ENST00000536559 553 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA1P49639 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA1P49639 AC007967.4-201ENST00000614700 386 ntBASIC12.37□□□□□ -0.43
HOXA1P49639 MIR6080-201ENST00000617359 66 ntBASIC12.37□□□□□ -0.43
HOXA1P49639 MIR6069-201ENST00000620069 79 ntBASIC12.37□□□□□ -0.43
HOXA1P49639 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 AC068760.1-201ENST00000493579 1953 ntBASIC12.37□□□□□ -0.43
HOXA1P49639 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 AC097359.2-201ENST00000604992 2389 ntBASIC12.37□□□□□ -0.43
HOXA1P49639 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 PCDHB18P-202ENST00000526308 3197 ntBASIC12.37□□□□□ -0.43
HOXA1P49639 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 PLSCR4-203ENST00000433593 2839 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 PRPF4-201ENST00000374198 2787 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXA1P49639 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXA1P49639 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXA1P49639 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 KRT8P12-202ENST00000472924 1397 ntBASIC12.36□□□□□ -0.43
HOXA1P49639 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
HOXA1P49639 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
HOXA1P49639 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 AL627223.1-201ENST00000416693 442 ntBASIC12.36□□□□□ -0.43
HOXA1P49639 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC12.36□□□□□ -0.43
HOXA1P49639 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXA1P49639 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXA1P49639 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC12.36□□□□□ -0.43
HOXA1P49639 POLD2P1-201ENST00000511220 997 ntBASIC12.36□□□□□ -0.43
HOXA1P49639 GATD1-206ENST00000526325 756 ntTSL 5 BASIC12.36□□□□□ -0.43
HOXA1P49639 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXA1P49639 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC12.36□□□□□ -0.43
HOXA1P49639 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.36□□□□□ -0.43
HOXA1P49639 AC105339.1-204ENST00000636249 355 ntBASIC12.36□□□□□ -0.43
HOXA1P49639 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXA1P49639 MFF-204ENST00000353339 2186 ntTSL 5 BASIC12.36□□□□□ -0.43
HOXA1P49639 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
HOXA1P49639 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXA1P49639 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC12.36□□□□□ -0.43
HOXA1P49639 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC12.36□□□□□ -0.43
HOXA1P49639 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXA1P49639 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC12.36□□□□□ -0.43
HOXA1P49639 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
HOXA1P49639 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
HOXA1P49639 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HOXA1P49639 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
HOXA1P49639 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
HOXA1P49639 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC12.35□□□□□ -0.43
HOXA1P49639 EPS15L1-202ENST00000455140 3266 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
HOXA1P49639 MTHFR-210ENST00000641407 2387 ntBASIC12.35□□□□□ -0.43
HOXA1P49639 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.35□□□□□ -0.43
HOXA1P49639 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 AL133267.1-201ENST00000398220 340 ntBASIC12.35□□□□□ -0.43
HOXA1P49639 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC12.35□□□□□ -0.43
HOXA1P49639 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms