RNA–Protein interactions for RNA: ENST00000374198.4

PRPF4-201, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRPF4, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-201ENST00000374198 NISCHQ9Y2I1 1504 aa25.41■■□□□ 1.66
PRPF4-201ENST00000374198 CCDC180Q9P1Z9 1646 aa22.56■■□□□ 1.2
PRPF4-201ENST00000374198 ABCC9O60706 1549 aa22.2■■□□□ 1.14
PRPF4-201ENST00000374198 HRCP23327 699 aa21.98■■□□□ 1.11
PRPF4-201ENST00000374198 PELP1Q8IZL8 1130 aaKnown RBP21.7■■□□□ 1.06
PRPF4-201ENST00000374198 DCAF8L2P0C7V8 631 aa21.42■■□□□ 1.02
PRPF4-201ENST00000374198 PPARGC1BQ86YN6 1023 aaKnown RBP21.42■■□□□ 1.02
PRPF4-201ENST00000374198 PCGF6Q9BYE7 350 aa21.31■■□□□ 1
PRPF4-201ENST00000374198 RB1CC1Q8TDY2 1594 aa21.29■■□□□ 1
PRPF4-201ENST00000374198 NACADO15069 1562 aa21.24■□□□□ 0.99
PRPF4-201ENST00000374198 ZCCHC6Q5VYS8 1495 aaKnown RBP21.15■□□□□ 0.98
PRPF4-201ENST00000374198 MYO15BQ96JP2 1530 aa21.09■□□□□ 0.97
PRPF4-201ENST00000374198 SUPT5HO00267 1087 aaKnown RBP21.05■□□□□ 0.96
PRPF4-201ENST00000374198 SHROOM4Q9ULL8 1493 aa20.99■□□□□ 0.95
PRPF4-201ENST00000374198 DCAF1Q9Y4B6 1507 aa20.97■□□□□ 0.95
PRPF4-201ENST00000374198 MYT1Q01538 1121 aa20.97■□□□□ 0.95
PRPF4-201ENST00000374198 SCAF1Q9H7N4 1312 aaKnown RBP20.92■□□□□ 0.94
PRPF4-201ENST00000374198 CHIC1Q5VXU3 224 aa20.9■□□□□ 0.94
PRPF4-201ENST00000374198 PABPN1Q86U42 306 aaKnown RBP eCLIP20.77■□□□□ 0.92
PRPF4-201ENST00000374198 UNC13AQ9UPW8 1703 aa20.77■□□□□ 0.92
PRPF4-201ENST00000374198 SCRIBQ14160 1630 aa20.67■□□□□ 0.9
PRPF4-201ENST00000374198 TRIM26Q12899 539 aaPredicted RBP20.63■□□□□ 0.89
PRPF4-201ENST00000374198 BICRAQ9NZM4 1560 aa20.61■□□□□ 0.89
PRPF4-201ENST00000374198 ZEB1P37275 1124 aaPredicted RBP20.6■□□□□ 0.89
PRPF4-201ENST00000374198 LOC105371045A0A1W2PR82 267 aa20.39■□□□□ 0.85
PRPF4-201ENST00000374198 DNAJC5BQ9UF47 199 aa20.36■□□□□ 0.85
PRPF4-201ENST00000374198 ACIN1Q9UKV3 1341 aaKnown RBP20.35■□□□□ 0.85
PRPF4-201ENST00000374198 NEUROD1Q13562 356 aa20.24■□□□□ 0.83
PRPF4-201ENST00000374198 GTF3C3Q9Y5Q9 886 aa20.16■□□□□ 0.82
PRPF4-201ENST00000374198 EIF4G1Q04637 1599 aaKnown RBP20.1■□□□□ 0.81
PRPF4-201ENST00000374198 CENPBP07199 599 aaPredicted RBP20.05■□□□□ 0.8
PRPF4-201ENST00000374198 CC2D2AQ9P2K1 1620 aa20.03■□□□□ 0.8
PRPF4-201ENST00000374198 CECR2Q9BXF3 1484 aa19.93■□□□□ 0.78
PRPF4-201ENST00000374198 DIEXFQ68CQ4 756 aaKnown RBP19.82■□□□□ 0.76
PRPF4-201ENST00000374198 TTBK1Q5TCY1 1321 aaPredicted RBP19.77■□□□□ 0.75
PRPF4-201ENST00000374198 SMARCA4P51532 1647 aa19.72■□□□□ 0.75
PRPF4-201ENST00000374198 BAZ1AQ9NRL2 1556 aaPredicted RBP19.71■□□□□ 0.75
PRPF4-201ENST00000374198 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.65■□□□□ 0.74
PRPF4-201ENST00000374198 CCER1Q8TC90 406 aaPredicted RBP19.65■□□□□ 0.74
PRPF4-201ENST00000374198 ATAD2BQ9ULI0 1458 aa19.62■□□□□ 0.73
PRPF4-201ENST00000374198 SMARCA2P51531 1590 aa19.61■□□□□ 0.73
PRPF4-201ENST00000374198 MROH2BQ7Z745 1585 aa19.6■□□□□ 0.73
PRPF4-201ENST00000374198 NCAPD3P42695 1498 aa19.6■□□□□ 0.73
PRPF4-201ENST00000374198 TRIM41Q8WV44 630 aa19.55■□□□□ 0.72
PRPF4-201ENST00000374198 BAZ1BQ9UIG0 1483 aaKnown RBP19.5■□□□□ 0.71
PRPF4-201ENST00000374198 HMGXB3Q12766 1538 aa19.49■□□□□ 0.71
PRPF4-201ENST00000374198 BCL11AQ9H165 835 aa19.49■□□□□ 0.71
PRPF4-201ENST00000374198 PEG3Q9GZU2 1588 aa19.48■□□□□ 0.71
PRPF4-201ENST00000374198 YTHDC1Q96MU7 727 aaKnown RBP19.46■□□□□ 0.71
PRPF4-201ENST00000374198 FAM9AQ8IZU1 332 aaPredicted RBP19.44■□□□□ 0.7
PRPF4-201ENST00000374198 ZNF316A6NFI3 1004 aaPredicted RBP19.39■□□□□ 0.7
PRPF4-201ENST00000374198 WIZO95785 1651 aa19.39■□□□□ 0.7
PRPF4-201ENST00000374198 RSF1Q96T23 1441 aaPredicted RBP19.37■□□□□ 0.69
PRPF4-201ENST00000374198 ANP32EQ9BTT0 268 aa19.35■□□□□ 0.69
PRPF4-201ENST00000374198 EHMT2Q96KQ7 1210 aa19.3■□□□□ 0.68
PRPF4-201ENST00000374198 MIER1Q8N108 512 aa19.27■□□□□ 0.68
PRPF4-201ENST00000374198 CLSPNQ9HAW4 1339 aa19.19■□□□□ 0.66
PRPF4-201ENST00000374198 NESP48681 1621 aa19.18■□□□□ 0.66
PRPF4-201ENST00000374198 TOP2AP11388 1531 aaKnown RBP19.17■□□□□ 0.66
PRPF4-201ENST00000374198 ERCC6Q03468 1493 aa19.16■□□□□ 0.66
PRPF4-201ENST00000374198 TSHZ2Q9NRE2 1034 aa19.15■□□□□ 0.66
PRPF4-201ENST00000374198 SUPT16HQ9Y5B9 1047 aaKnown RBP19.15■□□□□ 0.66
PRPF4-201ENST00000374198 CSRNP3Q8WYN3 585 aa19.11■□□□□ 0.65
PRPF4-201ENST00000374198 LAMC3Q9Y6N6 1575 aa19.09■□□□□ 0.65
PRPF4-201ENST00000374198 CADPSQ9ULU8 1353 aa19.06■□□□□ 0.64
PRPF4-201ENST00000374198 PDS5BQ9NTI5 1447 aa19■□□□□ 0.63
PRPF4-201ENST00000374198 WRNQ14191 1432 aaPredicted RBP eCLIP18.98■□□□□ 0.63
PRPF4-201ENST00000374198 CCDC88BA6NC98 1476 aa18.96■□□□□ 0.63
PRPF4-201ENST00000374198 KIF21AQ7Z4S6 1674 aa18.93■□□□□ 0.62
PRPF4-201ENST00000374198 CFTRP13569 1480 aa18.92■□□□□ 0.62
PRPF4-201ENST00000374198 CUX2O14529 1486 aa18.88■□□□□ 0.61
PRPF4-201ENST00000374198 PRKCSHP14314 528 aaPredicted RBP18.87■□□□□ 0.61
PRPF4-201ENST00000374198 FANCD2Q9BXW9 1451 aa18.85■□□□□ 0.61
PRPF4-201ENST00000374198 THOC2Q8NI27 1593 aaKnown RBP18.84■□□□□ 0.61
PRPF4-201ENST00000374198 CEP164Q9UPV0 1460 aa18.83■□□□□ 0.61
PRPF4-201ENST00000374198 MRC2Q9UBG0 1479 aa18.8■□□□□ 0.6
PRPF4-201ENST00000374198 CEP162Q5TB80 1403 aa18.75■□□□□ 0.59
PRPF4-201ENST00000374198 PRDM2Q13029 1718 aa18.75■□□□□ 0.59
PRPF4-201ENST00000374198 WDR62O43379 1518 aa18.7■□□□□ 0.58
PRPF4-201ENST00000374198 RBM19Q9Y4C8 960 aaKnown RBP18.66■□□□□ 0.58
PRPF4-201ENST00000374198 URB2Q14146 1524 aaKnown RBP18.65■□□□□ 0.58
PRPF4-201ENST00000374198 HNRNPUL2Q1KMD3 747 aaKnown RBP18.64■□□□□ 0.58
PRPF4-201ENST00000374198 TNIKQ9UKE5 1360 aa18.63■□□□□ 0.57
PRPF4-201ENST00000374198 BCANQ96GW7 911 aa18.61■□□□□ 0.57
PRPF4-201ENST00000374198 FKBP8Q14318 412 aa18.55■□□□□ 0.56
PRPF4-201ENST00000374198 ERICH6Q7L0X2 663 aa18.54■□□□□ 0.56
PRPF4-201ENST00000374198 TOPBP1Q92547 1522 aa18.54■□□□□ 0.56
PRPF4-201ENST00000374198 ABCC8Q09428 1581 aa18.52■□□□□ 0.56
PRPF4-201ENST00000374198 MSH5O43196 834 aa18.52■□□□□ 0.56
PRPF4-201ENST00000374198 DNMBPQ6XZF7 1577 aa18.5■□□□□ 0.55
PRPF4-201ENST00000374198 KCNH8Q96L42 1107 aa18.43■□□□□ 0.54
PRPF4-201ENST00000374198 UBTFP17480 764 aaKnown RBP18.43■□□□□ 0.54
PRPF4-201ENST00000374198 IFT140Q96RY7 1462 aa18.43■□□□□ 0.54
PRPF4-201ENST00000374198 NEFLP07196 543 aa18.4■□□□□ 0.54
PRPF4-201ENST00000374198 SOGA1O94964 1423 aa18.39■□□□□ 0.53
PRPF4-201ENST00000374198 FANCIQ9NVI1 1328 aa18.39■□□□□ 0.53
PRPF4-201ENST00000374198 MYT1LQ9UL68 1186 aa18.38■□□□□ 0.53
PRPF4-201ENST00000374198 CUX1P39880 1505 aa18.38■□□□□ 0.53
PRPF4-201ENST00000374198 POLA1P09884 1462 aaPredicted RBP18.38■□□□□ 0.53
PRPF4-201ENST00000374198 DHX57Q6P158 1386 aaKnown RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms