RNA–Protein interactions for RNA: ENST00000258888.5

ALPK3-201, Transcript of alpha kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ALPK3, Length 10,917 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ALPK3-201ENST00000258888 DCAF8L2P0C7V8 631 aa23.12■■□□□ 1.29
ALPK3-201ENST00000258888 SUPT5HO00267 1087 aaKnown RBP22.16■■□□□ 1.14
ALPK3-201ENST00000258888 NISCHQ9Y2I1 1504 aa21.86■■□□□ 1.09
ALPK3-201ENST00000258888 SHROOM4Q9ULL8 1493 aa21.8■■□□□ 1.08
ALPK3-201ENST00000258888 EHMT2Q96KQ7 1210 aa21.63■■□□□ 1.05
ALPK3-201ENST00000258888 PELP1Q8IZL8 1130 aaKnown RBP21.24■□□□□ 0.99
ALPK3-201ENST00000258888 APLP2Q06481 763 aa21.03■□□□□ 0.96
ALPK3-201ENST00000258888 TTBK1Q5TCY1 1321 aaPredicted RBP20.96■□□□□ 0.95
ALPK3-201ENST00000258888 FAM9AQ8IZU1 332 aaPredicted RBP20.96■□□□□ 0.95
ALPK3-201ENST00000258888 PCGF6Q9BYE7 350 aa20.93■□□□□ 0.94
ALPK3-201ENST00000258888 RANGAP1P46060 587 aaPredicted RBP20.59■□□□□ 0.89
ALPK3-201ENST00000258888 CENPBP07199 599 aaPredicted RBP20.54■□□□□ 0.88
ALPK3-201ENST00000258888 CCER1Q8TC90 406 aaPredicted RBP20.47■□□□□ 0.87
ALPK3-201ENST00000258888 ZEB1P37275 1124 aaPredicted RBP20.44■□□□□ 0.86
ALPK3-201ENST00000258888 TRIM41Q8WV44 630 aa20.43■□□□□ 0.86
ALPK3-201ENST00000258888 ERICH6Q7L0X2 663 aa20.42■□□□□ 0.86
ALPK3-201ENST00000258888 ATP1B4Q9UN42 357 aaPredicted RBP20.29■□□□□ 0.84
ALPK3-201ENST00000258888 MYT1Q01538 1121 aa20.29■□□□□ 0.84
ALPK3-201ENST00000258888 YTHDC1Q96MU7 727 aaKnown RBP20.26■□□□□ 0.83
ALPK3-201ENST00000258888 UBTFP17480 764 aaKnown RBP20.25■□□□□ 0.83
ALPK3-201ENST00000258888 PPARGC1BQ86YN6 1023 aaKnown RBP20.12■□□□□ 0.81
ALPK3-201ENST00000258888 NEFLP07196 543 aa20.12■□□□□ 0.81
ALPK3-201ENST00000258888 TRIM26Q12899 539 aaPredicted RBP19.87■□□□□ 0.77
ALPK3-201ENST00000258888 HRCP23327 699 aa19.79■□□□□ 0.76
ALPK3-201ENST00000258888 ITGAEP38570 1179 aa19.71■□□□□ 0.75
ALPK3-201ENST00000258888 LOC105371045A0A1W2PR82 267 aa19.67■□□□□ 0.74
ALPK3-201ENST00000258888 POLR3GLQ9BT43 218 aa19.63■□□□□ 0.73
ALPK3-201ENST00000258888 HNRNPUL2Q1KMD3 747 aaKnown RBP19.59■□□□□ 0.73
ALPK3-201ENST00000258888 CHIC1Q5VXU3 224 aa19.56■□□□□ 0.72
ALPK3-201ENST00000258888 DAXXQ9UER7 740 aaPredicted RBP19.53■□□□□ 0.72
ALPK3-201ENST00000258888 CNGB1Q14028 1251 aaPredicted RBP19.5■□□□□ 0.71
ALPK3-201ENST00000258888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.49■□□□□ 0.71
ALPK3-201ENST00000258888 MYT1LQ9UL68 1186 aa19.42■□□□□ 0.7
ALPK3-201ENST00000258888 DIEXFQ68CQ4 756 aaKnown RBP19.31■□□□□ 0.68
ALPK3-201ENST00000258888 SLC4A1APQ9BWU0 796 aaKnown RBP19.17■□□□□ 0.66
ALPK3-201ENST00000258888 FAM50AQ14320 339 aaKnown RBP19.14■□□□□ 0.66
ALPK3-201ENST00000258888 RTL5Q5HYW3 569 aaPredicted RBP19.14■□□□□ 0.65
ALPK3-201ENST00000258888 ZNF316A6NFI3 1004 aaPredicted RBP19.12■□□□□ 0.65
ALPK3-201ENST00000258888 CLSPNQ9HAW4 1339 aa19.1■□□□□ 0.65
ALPK3-201ENST00000258888 BCANQ96GW7 911 aa19.08■□□□□ 0.65
ALPK3-201ENST00000258888 NEUROD1Q13562 356 aa19.05■□□□□ 0.64
ALPK3-201ENST00000258888 TRIM52Q96A61 297 aa19.01■□□□□ 0.63
ALPK3-201ENST00000258888 GTF3C3Q9Y5Q9 886 aa19.01■□□□□ 0.63
ALPK3-201ENST00000258888 ZNF326Q5BKZ1 582 aaKnown RBP18.93■□□□□ 0.62
ALPK3-201ENST00000258888 PABPN1Q86U42 306 aaKnown RBP eCLIP18.87■□□□□ 0.61
ALPK3-201ENST00000258888 ANP32CO43423 234 aa18.87■□□□□ 0.61
ALPK3-201ENST00000258888 ABCC9O60706 1549 aa18.84■□□□□ 0.61
ALPK3-201ENST00000258888 CDK11AQ9UQ88 783 aaPredicted RBP18.77■□□□□ 0.6
ALPK3-201ENST00000258888 ACIN1Q9UKV3 1341 aaKnown RBP18.68■□□□□ 0.58
ALPK3-201ENST00000258888 BCL11AQ9H165 835 aa18.66■□□□□ 0.58
ALPK3-201ENST00000258888 CANXP27824 592 aaKnown RBP18.65■□□□□ 0.58
ALPK3-201ENST00000258888 ARID3CA6NKF2 412 aa18.64■□□□□ 0.57
ALPK3-201ENST00000258888 ZBTB47Q9UFB7 747 aaPredicted RBP18.62■□□□□ 0.57
ALPK3-201ENST00000258888 FBLN2P98095 1184 aa18.61■□□□□ 0.57
ALPK3-201ENST00000258888 P3H3Q8IVL6 736 aa18.61■□□□□ 0.57
ALPK3-201ENST00000258888 ANP32AP39687 249 aaKnown RBP18.51■□□□□ 0.55
ALPK3-201ENST00000258888 SLC24A1O60721 1099 aa18.5■□□□□ 0.55
ALPK3-201ENST00000258888 NPM2Q86SE8 214 aaKnown RBP18.5■□□□□ 0.55
ALPK3-201ENST00000258888 CSRNP3Q8WYN3 585 aa18.5■□□□□ 0.55
ALPK3-201ENST00000258888 ZNF777Q9ULD5 760 aaPredicted RBP18.44■□□□□ 0.54
ALPK3-201ENST00000258888 FKBP8Q14318 412 aa18.41■□□□□ 0.54
ALPK3-201ENST00000258888 NEFMP07197 916 aa18.4■□□□□ 0.54
ALPK3-201ENST00000258888 SCRIBQ14160 1630 aa18.38■□□□□ 0.53
ALPK3-201ENST00000258888 TONSLQ96HA7 1378 aa18.37■□□□□ 0.53
ALPK3-201ENST00000258888 DCAF1Q9Y4B6 1507 aa18.35■□□□□ 0.53
ALPK3-201ENST00000258888 HNRNPUQ00839 825 aaKnown RBP eCLIP18.33■□□□□ 0.52
ALPK3-201ENST00000258888 EIF5BO60841 1220 aaKnown RBP18.31■□□□□ 0.52
ALPK3-201ENST00000258888 DDX10Q13206 875 aaKnown RBP18.3■□□□□ 0.52
ALPK3-201ENST00000258888 FAM9BQ8IZU0 186 aa18.28■□□□□ 0.52
ALPK3-201ENST00000258888 HSP90AA1P07900 732 aaKnown RBP18.22■□□□□ 0.51
ALPK3-201ENST00000258888 SALL2Q9Y467 1007 aaPredicted RBP18.21■□□□□ 0.51
ALPK3-201ENST00000258888 GLIPR1L2Q4G1C9 344 aa18.17■□□□□ 0.5
ALPK3-201ENST00000258888 CHGAP10645 457 aaKnown RBP18.16■□□□□ 0.5
ALPK3-201ENST00000258888 NBR1Q14596 966 aa18.15■□□□□ 0.5
ALPK3-201ENST00000258888 CHIC2Q9UKJ5 165 aa18.15■□□□□ 0.5
ALPK3-201ENST00000258888 ANP32BQ92688 251 aaKnown RBP18.14■□□□□ 0.5
ALPK3-201ENST00000258888 CCDC136Q96JN2 1154 aa18.14■□□□□ 0.49
ALPK3-201ENST00000258888 UPF2Q9HAU5 1272 aaKnown RBP18.14■□□□□ 0.49
ALPK3-201ENST00000258888 SCAF1Q9H7N4 1312 aaKnown RBP18.12■□□□□ 0.49
ALPK3-201ENST00000258888 IRX6P78412 446 aaPredicted RBP18.1■□□□□ 0.49
ALPK3-201ENST00000258888 MIER1Q8N108 512 aa18.09■□□□□ 0.49
ALPK3-201ENST00000258888 ZCCHC6Q5VYS8 1495 aaKnown RBP18.09■□□□□ 0.49
ALPK3-201ENST00000258888 TMC1Q8TDI8 760 aa18.08■□□□□ 0.49
ALPK3-201ENST00000258888 MRS2Q9HD23 443 aa18.08■□□□□ 0.49
ALPK3-201ENST00000258888 ARXQ96QS3 562 aa18.07■□□□□ 0.48
ALPK3-201ENST00000258888 STAG3Q9UJ98 1225 aa18.07■□□□□ 0.48
ALPK3-201ENST00000258888 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.06■□□□□ 0.48
ALPK3-201ENST00000258888 HIRIP3Q9BW71 556 aaPredicted RBP18.06■□□□□ 0.48
ALPK3-201ENST00000258888 ESF1Q9H501 851 aaKnown RBP18.06■□□□□ 0.48
ALPK3-201ENST00000258888 PLPPR3Q6T4P5 718 aa18.02■□□□□ 0.48
ALPK3-201ENST00000258888 KDM2AQ9Y2K7 1162 aa18.01■□□□□ 0.47
ALPK3-201ENST00000258888 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.01■□□□□ 0.47
ALPK3-201ENST00000258888 CLIP1P30622 1438 aa18.01■□□□□ 0.47
ALPK3-201ENST00000258888 WDR43Q15061 677 aaKnown RBP eCLIP17.99■□□□□ 0.47
ALPK3-201ENST00000258888 MYO15BQ96JP2 1530 aa17.98■□□□□ 0.47
ALPK3-201ENST00000258888 MTUS2Q5JR59 1369 aa17.97■□□□□ 0.47
ALPK3-201ENST00000258888 RRP7BPQ9NSQ0 103 aa17.89■□□□□ 0.45
ALPK3-201ENST00000258888 SENP3-EIF4A1A0A087X0R7 540 aa17.85■□□□□ 0.45
ALPK3-201ENST00000258888 TSPY4P0CV99 314 aa17.85■□□□□ 0.45
ALPK3-201ENST00000258888 TSPY10P0CW01 314 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms