RNA–Protein interactions for RNA: ENST00000355311.9

EBF3-201, Transcript of early B cell factor 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene EBF3, Length 2,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3-201ENST00000355311 NISCHQ9Y2I1 1504 aa27.8■■■□□ 2.04
EBF3-201ENST00000355311 SHROOM4Q9ULL8 1493 aa24.87■■□□□ 1.57
EBF3-201ENST00000355311 DCAF8L2P0C7V8 631 aa24.47■■□□□ 1.51
EBF3-201ENST00000355311 SUPT5HO00267 1087 aaKnown RBP24.41■■□□□ 1.5
EBF3-201ENST00000355311 CCDC180Q9P1Z9 1646 aa24.24■■□□□ 1.47
EBF3-201ENST00000355311 ZCCHC6Q5VYS8 1495 aaKnown RBP23.39■■□□□ 1.34
EBF3-201ENST00000355311 CHIC1Q5VXU3 224 aa23.22■■□□□ 1.31
EBF3-201ENST00000355311 MYO15BQ96JP2 1530 aa23.1■■□□□ 1.29
EBF3-201ENST00000355311 DCAF1Q9Y4B6 1507 aa23.02■■□□□ 1.28
EBF3-201ENST00000355311 LOC105371045A0A1W2PR82 267 aa23.01■■□□□ 1.27
EBF3-201ENST00000355311 EHMT2Q96KQ7 1210 aa23■■□□□ 1.27
EBF3-201ENST00000355311 PCGF6Q9BYE7 350 aa22.93■■□□□ 1.26
EBF3-201ENST00000355311 FAM9AQ8IZU1 332 aaPredicted RBP22.74■■□□□ 1.23
EBF3-201ENST00000355311 PPARGC1BQ86YN6 1023 aaKnown RBP22.62■■□□□ 1.21
EBF3-201ENST00000355311 HRCP23327 699 aa22.62■■□□□ 1.21
EBF3-201ENST00000355311 ABCC9O60706 1549 aa22.53■■□□□ 1.2
EBF3-201ENST00000355311 SCRIBQ14160 1630 aa22.5■■□□□ 1.19
EBF3-201ENST00000355311 NACADO15069 1562 aa22.39■■□□□ 1.18
EBF3-201ENST00000355311 TRIM41Q8WV44 630 aa22.38■■□□□ 1.17
EBF3-201ENST00000355311 RSF1Q96T23 1441 aaPredicted RBP22.23■■□□□ 1.15
EBF3-201ENST00000355311 TTBK1Q5TCY1 1321 aaPredicted RBP22.13■■□□□ 1.13
EBF3-201ENST00000355311 CECR2Q9BXF3 1484 aa22.13■■□□□ 1.13
EBF3-201ENST00000355311 RB1CC1Q8TDY2 1594 aa22.1■■□□□ 1.13
EBF3-201ENST00000355311 TRIM26Q12899 539 aaPredicted RBP21.97■■□□□ 1.11
EBF3-201ENST00000355311 PABPN1Q86U42 306 aaKnown RBP eCLIP21.94■■□□□ 1.1
EBF3-201ENST00000355311 MROH2BQ7Z745 1585 aa21.87■■□□□ 1.09
EBF3-201ENST00000355311 UNC13AQ9UPW8 1703 aa21.77■■□□□ 1.07
EBF3-201ENST00000355311 WIZO95785 1651 aa21.74■■□□□ 1.07
EBF3-201ENST00000355311 RANGAP1P46060 587 aaPredicted RBP21.66■■□□□ 1.06
EBF3-201ENST00000355311 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.62■■□□□ 1.05
EBF3-201ENST00000355311 SCAF1Q9H7N4 1312 aaKnown RBP21.62■■□□□ 1.05
EBF3-201ENST00000355311 PELP1Q8IZL8 1130 aaKnown RBP21.57■■□□□ 1.04
EBF3-201ENST00000355311 UBTFP17480 764 aaKnown RBP21.48■■□□□ 1.03
EBF3-201ENST00000355311 ABCC8Q09428 1581 aa21.48■■□□□ 1.03
EBF3-201ENST00000355311 BICRAQ9NZM4 1560 aa21.43■■□□□ 1.02
EBF3-201ENST00000355311 CCER1Q8TC90 406 aaPredicted RBP21.4■■□□□ 1.02
EBF3-201ENST00000355311 CCDC88BA6NC98 1476 aa21.38■■□□□ 1.01
EBF3-201ENST00000355311 SOGA1O94964 1423 aa21.34■■□□□ 1.01
EBF3-201ENST00000355311 RUSC2Q8N2Y8 1516 aa21.29■■□□□ 1
EBF3-201ENST00000355311 BAZ1AQ9NRL2 1556 aaPredicted RBP21.25■□□□□ 0.99
EBF3-201ENST00000355311 ZEB1P37275 1124 aaPredicted RBP21.2■□□□□ 0.98
EBF3-201ENST00000355311 CSRNP3Q8WYN3 585 aa21.19■□□□□ 0.98
EBF3-201ENST00000355311 HNRNPUL2Q1KMD3 747 aaKnown RBP21.16■□□□□ 0.98
EBF3-201ENST00000355311 SMARCA4P51532 1647 aa21.14■□□□□ 0.97
EBF3-201ENST00000355311 PEG3Q9GZU2 1588 aa21.09■□□□□ 0.97
EBF3-201ENST00000355311 CEP162Q5TB80 1403 aa21.06■□□□□ 0.96
EBF3-201ENST00000355311 SMARCA2P51531 1590 aa21.06■□□□□ 0.96
EBF3-201ENST00000355311 TOP2AP11388 1531 aaKnown RBP21.05■□□□□ 0.96
EBF3-201ENST00000355311 NEUROD1Q13562 356 aa21.03■□□□□ 0.96
EBF3-201ENST00000355311 EIF4G1Q04637 1599 aaKnown RBP20.93■□□□□ 0.94
EBF3-201ENST00000355311 GTF3C3Q9Y5Q9 886 aa20.93■□□□□ 0.94
EBF3-201ENST00000355311 ACIN1Q9UKV3 1341 aaKnown RBP20.91■□□□□ 0.94
EBF3-201ENST00000355311 WRNQ14191 1432 aaPredicted RBP eCLIP20.91■□□□□ 0.94
EBF3-201ENST00000355311 YTHDC1Q96MU7 727 aaKnown RBP20.87■□□□□ 0.93
EBF3-201ENST00000355311 DIEXFQ68CQ4 756 aaKnown RBP20.85■□□□□ 0.93
EBF3-201ENST00000355311 APLP2Q06481 763 aa20.84■□□□□ 0.93
EBF3-201ENST00000355311 TNIKQ9UKE5 1360 aa20.83■□□□□ 0.92
EBF3-201ENST00000355311 ITGAEP38570 1179 aa20.79■□□□□ 0.92
EBF3-201ENST00000355311 BAZ1BQ9UIG0 1483 aaKnown RBP20.75■□□□□ 0.91
EBF3-201ENST00000355311 ATAD2BQ9ULI0 1458 aa20.74■□□□□ 0.91
EBF3-201ENST00000355311 SYNJ1O43426 1573 aa20.73■□□□□ 0.91
EBF3-201ENST00000355311 GOLGA3Q08378 1498 aa20.69■□□□□ 0.9
EBF3-201ENST00000355311 RAPGEF2Q9Y4G8 1499 aa20.69■□□□□ 0.9
EBF3-201ENST00000355311 CLIP1P30622 1438 aa20.69■□□□□ 0.9
EBF3-201ENST00000355311 HMGXB3Q12766 1538 aa20.68■□□□□ 0.9
EBF3-201ENST00000355311 ATP1B4Q9UN42 357 aaPredicted RBP20.65■□□□□ 0.9
EBF3-201ENST00000355311 KANK4Q5T7N3 995 aaPredicted RBP20.61■□□□□ 0.89
EBF3-201ENST00000355311 P3H3Q8IVL6 736 aa20.61■□□□□ 0.89
EBF3-201ENST00000355311 MYT1Q01538 1121 aa20.58■□□□□ 0.88
EBF3-201ENST00000355311 NCAPD3P42695 1498 aa20.57■□□□□ 0.88
EBF3-201ENST00000355311 CENPBP07199 599 aaPredicted RBP20.54■□□□□ 0.88
EBF3-201ENST00000355311 EEA1Q15075 1411 aa20.54■□□□□ 0.88
EBF3-201ENST00000355311 ZNF316A6NFI3 1004 aaPredicted RBP20.54■□□□□ 0.88
EBF3-201ENST00000355311 CEP164Q9UPV0 1460 aa20.53■□□□□ 0.88
EBF3-201ENST00000355311 MIER1Q8N108 512 aa20.51■□□□□ 0.87
EBF3-201ENST00000355311 VPS8Q8N3P4 1428 aa20.41■□□□□ 0.86
EBF3-201ENST00000355311 PRDM2Q13029 1718 aa20.36■□□□□ 0.85
EBF3-201ENST00000355311 KIF21BO75037 1637 aa20.34■□□□□ 0.85
EBF3-201ENST00000355311 CC2D2AQ9P2K1 1620 aa20.34■□□□□ 0.85
EBF3-201ENST00000355311 FAM50AQ14320 339 aaKnown RBP20.28■□□□□ 0.84
EBF3-201ENST00000355311 DNAJC5BQ9UF47 199 aa20.27■□□□□ 0.84
EBF3-201ENST00000355311 CUX1P39880 1505 aa20.27■□□□□ 0.83
EBF3-201ENST00000355311 ARAP1Q96P48 1450 aa20.25■□□□□ 0.83
EBF3-201ENST00000355311 HIRIP3Q9BW71 556 aaPredicted RBP20.25■□□□□ 0.83
EBF3-201ENST00000355311 TOP2BQ02880 1626 aa20.21■□□□□ 0.83
EBF3-201ENST00000355311 KIF27Q86VH2 1401 aa20.2■□□□□ 0.82
EBF3-201ENST00000355311 CUX2O14529 1486 aa20.2■□□□□ 0.82
EBF3-201ENST00000355311 ARID3CA6NKF2 412 aa20.2■□□□□ 0.82
EBF3-201ENST00000355311 PRXQ9BXM0 1461 aa20.15■□□□□ 0.82
EBF3-201ENST00000355311 SIN3AQ96ST3 1273 aa20.15■□□□□ 0.82
EBF3-201ENST00000355311 DHX57Q6P158 1386 aaKnown RBP20.12■□□□□ 0.81
EBF3-201ENST00000355311 IGF1RP08069 1367 aa20.11■□□□□ 0.81
EBF3-201ENST00000355311 KCNH8Q96L42 1107 aa20.11■□□□□ 0.81
EBF3-201ENST00000355311 CFTRP13569 1480 aa20.1■□□□□ 0.81
EBF3-201ENST00000355311 CARMIL1Q5VZK9 1371 aa20.08■□□□□ 0.8
EBF3-201ENST00000355311 ARHGAP35Q9NRY4 1499 aa20.06■□□□□ 0.8
EBF3-201ENST00000355311 BIVM-ERCC5R4GMW8 1640 aa20.05■□□□□ 0.8
EBF3-201ENST00000355311 RAD54L2Q9Y4B4 1467 aa20.05■□□□□ 0.8
EBF3-201ENST00000355311 NESP48681 1621 aa20.04■□□□□ 0.8
EBF3-201ENST00000355311 CADPSQ9ULU8 1353 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms