RNA–Protein interactions for RNA: ENST00000360413.7

SRGAP3-201, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best) BASIC

Gene SRGAP3, Length 8,415 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-201ENST00000360413 PELP1Q8IZL8 1130 aaKnown RBP21.68■■□□□ 1.06
SRGAP3-201ENST00000360413 DCAF8L2P0C7V8 631 aa21.37■■□□□ 1.01
SRGAP3-201ENST00000360413 MYT1Q01538 1121 aa21.04■□□□□ 0.96
SRGAP3-201ENST00000360413 ERICH6Q7L0X2 663 aa20.88■□□□□ 0.93
SRGAP3-201ENST00000360413 FAM9AQ8IZU1 332 aaPredicted RBP20.73■□□□□ 0.91
SRGAP3-201ENST00000360413 CCER1Q8TC90 406 aaPredicted RBP20.63■□□□□ 0.89
SRGAP3-201ENST00000360413 SUPT5HO00267 1087 aaKnown RBP20.59■□□□□ 0.89
SRGAP3-201ENST00000360413 CENPBP07199 599 aaPredicted RBP20.53■□□□□ 0.88
SRGAP3-201ENST00000360413 APLP2Q06481 763 aa20.43■□□□□ 0.86
SRGAP3-201ENST00000360413 EHMT2Q96KQ7 1210 aa20.34■□□□□ 0.85
SRGAP3-201ENST00000360413 PCGF6Q9BYE7 350 aa20.17■□□□□ 0.82
SRGAP3-201ENST00000360413 ZEB1P37275 1124 aaPredicted RBP20.02■□□□□ 0.79
SRGAP3-201ENST00000360413 NEFLP07196 543 aa20.01■□□□□ 0.79
SRGAP3-201ENST00000360413 YTHDC1Q96MU7 727 aaKnown RBP19.89■□□□□ 0.77
SRGAP3-201ENST00000360413 SHROOM4Q9ULL8 1493 aa19.85■□□□□ 0.77
SRGAP3-201ENST00000360413 TTBK1Q5TCY1 1321 aaPredicted RBP19.84■□□□□ 0.77
SRGAP3-201ENST00000360413 DAXXQ9UER7 740 aaPredicted RBP19.67■□□□□ 0.74
SRGAP3-201ENST00000360413 NISCHQ9Y2I1 1504 aa19.51■□□□□ 0.71
SRGAP3-201ENST00000360413 RTL5Q5HYW3 569 aaPredicted RBP19.41■□□□□ 0.7
SRGAP3-201ENST00000360413 ZNF316A6NFI3 1004 aaPredicted RBP19.2■□□□□ 0.66
SRGAP3-201ENST00000360413 RANGAP1P46060 587 aaPredicted RBP19.19■□□□□ 0.66
SRGAP3-201ENST00000360413 HRCP23327 699 aa19.18■□□□□ 0.66
SRGAP3-201ENST00000360413 ATP1B4Q9UN42 357 aaPredicted RBP19.14■□□□□ 0.65
SRGAP3-201ENST00000360413 TRIM26Q12899 539 aaPredicted RBP19.02■□□□□ 0.64
SRGAP3-201ENST00000360413 TRIM41Q8WV44 630 aa18.97■□□□□ 0.63
SRGAP3-201ENST00000360413 UBTFP17480 764 aaKnown RBP18.92■□□□□ 0.62
SRGAP3-201ENST00000360413 PPARGC1BQ86YN6 1023 aaKnown RBP18.9■□□□□ 0.62
SRGAP3-201ENST00000360413 CLSPNQ9HAW4 1339 aa18.9■□□□□ 0.62
SRGAP3-201ENST00000360413 POLR3GLQ9BT43 218 aa18.83■□□□□ 0.61
SRGAP3-201ENST00000360413 EIF5BO60841 1220 aaKnown RBP18.82■□□□□ 0.6
SRGAP3-201ENST00000360413 MYT1LQ9UL68 1186 aa18.81■□□□□ 0.6
SRGAP3-201ENST00000360413 DIEXFQ68CQ4 756 aaKnown RBP18.8■□□□□ 0.6
SRGAP3-201ENST00000360413 GTF3C3Q9Y5Q9 886 aa18.8■□□□□ 0.6
SRGAP3-201ENST00000360413 GLIPR1L2Q4G1C9 344 aa18.76■□□□□ 0.59
SRGAP3-201ENST00000360413 CNGB1Q14028 1251 aaPredicted RBP18.71■□□□□ 0.59
SRGAP3-201ENST00000360413 BCANQ96GW7 911 aa18.7■□□□□ 0.58
SRGAP3-201ENST00000360413 CDK11AQ9UQ88 783 aaPredicted RBP18.7■□□□□ 0.58
SRGAP3-201ENST00000360413 ZBTB47Q9UFB7 747 aaPredicted RBP18.63■□□□□ 0.57
SRGAP3-201ENST00000360413 ITGAEP38570 1179 aa18.55■□□□□ 0.56
SRGAP3-201ENST00000360413 SLC4A1APQ9BWU0 796 aaKnown RBP18.52■□□□□ 0.56
SRGAP3-201ENST00000360413 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.51■□□□□ 0.55
SRGAP3-201ENST00000360413 HNRNPUL2Q1KMD3 747 aaKnown RBP18.51■□□□□ 0.55
SRGAP3-201ENST00000360413 ANP32AP39687 249 aaKnown RBP18.47■□□□□ 0.55
SRGAP3-201ENST00000360413 NEFMP07197 916 aa18.46■□□□□ 0.55
SRGAP3-201ENST00000360413 ANP32BQ92688 251 aaKnown RBP18.37■□□□□ 0.53
SRGAP3-201ENST00000360413 ACIN1Q9UKV3 1341 aaKnown RBP18.36■□□□□ 0.53
SRGAP3-201ENST00000360413 NPM2Q86SE8 214 aaKnown RBP18.28■□□□□ 0.52
SRGAP3-201ENST00000360413 LOC105371045A0A1W2PR82 267 aa18.26■□□□□ 0.51
SRGAP3-201ENST00000360413 ANP32CO43423 234 aa18.25■□□□□ 0.51
SRGAP3-201ENST00000360413 NBR1Q14596 966 aa18.18■□□□□ 0.5
SRGAP3-201ENST00000360413 CHIC1Q5VXU3 224 aa18.18■□□□□ 0.5
SRGAP3-201ENST00000360413 CANXP27824 592 aaKnown RBP18.14■□□□□ 0.49
SRGAP3-201ENST00000360413 BCL11AQ9H165 835 aa18.13■□□□□ 0.49
SRGAP3-201ENST00000360413 HSP90AA1P07900 732 aaKnown RBP18.07■□□□□ 0.48
SRGAP3-201ENST00000360413 NEUROD1Q13562 356 aa18.05■□□□□ 0.48
SRGAP3-201ENST00000360413 SLC24A1O60721 1099 aa18.03■□□□□ 0.48
SRGAP3-201ENST00000360413 FKBP8Q14318 412 aa18.03■□□□□ 0.48
SRGAP3-201ENST00000360413 ARXQ96QS3 562 aa18.02■□□□□ 0.47
SRGAP3-201ENST00000360413 CDK11BP21127 795 aaKnown RBP18■□□□□ 0.47
SRGAP3-201ENST00000360413 TNNT2P45379 298 aaPredicted RBP17.98■□□□□ 0.47
SRGAP3-201ENST00000360413 UPF2Q9HAU5 1272 aaKnown RBP17.95■□□□□ 0.46
SRGAP3-201ENST00000360413 FAM50AQ14320 339 aaKnown RBP17.92■□□□□ 0.46
SRGAP3-201ENST00000360413 TRIM52Q96A61 297 aa17.88■□□□□ 0.45
SRGAP3-201ENST00000360413 ZNF326Q5BKZ1 582 aaKnown RBP17.82■□□□□ 0.44
SRGAP3-201ENST00000360413 SCAF1Q9H7N4 1312 aaKnown RBP17.82■□□□□ 0.44
SRGAP3-201ENST00000360413 TRIM44Q96DX7 344 aaPredicted RBP17.8■□□□□ 0.44
SRGAP3-201ENST00000360413 ANP32EQ9BTT0 268 aa17.78■□□□□ 0.44
SRGAP3-201ENST00000360413 ESF1Q9H501 851 aaKnown RBP17.76■□□□□ 0.43
SRGAP3-201ENST00000360413 CCDC136Q96JN2 1154 aa17.72■□□□□ 0.43
SRGAP3-201ENST00000360413 RTN4Q9NQC3 1192 aaKnown RBP17.69■□□□□ 0.42
SRGAP3-201ENST00000360413 HNRNPUQ00839 825 aaKnown RBP eCLIP17.69■□□□□ 0.42
SRGAP3-201ENST00000360413 NAP1L5Q96NT1 182 aaPredicted RBP17.68■□□□□ 0.42
SRGAP3-201ENST00000360413 ERICH6BQ5W0A0 696 aa17.65■□□□□ 0.42
SRGAP3-201ENST00000360413 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.6■□□□□ 0.41
SRGAP3-201ENST00000360413 DDRGK1Q96HY6 314 aa17.59■□□□□ 0.41
SRGAP3-201ENST00000360413 DNTTIP2Q5QJE6 756 aaKnown RBP17.58■□□□□ 0.4
SRGAP3-201ENST00000360413 AMER1Q5JTC6 1135 aaPredicted RBP17.55■□□□□ 0.4
SRGAP3-201ENST00000360413 FAM9BQ8IZU0 186 aa17.55■□□□□ 0.4
SRGAP3-201ENST00000360413 BECN1Q14457 450 aa17.54■□□□□ 0.4
SRGAP3-201ENST00000360413 MYH16Q9H6N6 1097 aa17.54■□□□□ 0.4
SRGAP3-201ENST00000360413 PTMAP06454 111 aaKnown RBP17.52■□□□□ 0.39
SRGAP3-201ENST00000360413 STAG3Q9UJ98 1225 aa17.5■□□□□ 0.39
SRGAP3-201ENST00000360413 IRX6P78412 446 aaPredicted RBP17.49■□□□□ 0.39
SRGAP3-201ENST00000360413 GOLGA6L22H0YM25 854 aa17.48■□□□□ 0.39
SRGAP3-201ENST00000360413 NCLP19338 710 aaKnown RBP17.47■□□□□ 0.39
SRGAP3-201ENST00000360413 SALL2Q9Y467 1007 aaPredicted RBP17.47■□□□□ 0.39
SRGAP3-201ENST00000360413 ZRSR1Q15695 479 aaKnown RBP17.45■□□□□ 0.38
SRGAP3-201ENST00000360413 DDX10Q13206 875 aaKnown RBP17.44■□□□□ 0.38
SRGAP3-201ENST00000360413 PPM1GO15355 546 aaPredicted RBP17.4■□□□□ 0.38
SRGAP3-201ENST00000360413 FBLN2P98095 1184 aa17.36■□□□□ 0.37
SRGAP3-201ENST00000360413 TMC1Q8TDI8 760 aa17.36■□□□□ 0.37
SRGAP3-201ENST00000360413 LAS1LQ9Y4W2 734 aaKnown RBP17.34■□□□□ 0.37
SRGAP3-201ENST00000360413 NOP58Q9Y2X3 529 aaKnown RBP17.34■□□□□ 0.37
SRGAP3-201ENST00000360413 TONSLQ96HA7 1378 aa17.33■□□□□ 0.36
SRGAP3-201ENST00000360413 DEKP35659 375 aaKnown RBP17.32■□□□□ 0.36
SRGAP3-201ENST00000360413 NPM1P06748 294 aaKnown RBP eCLIP17.31■□□□□ 0.36
SRGAP3-201ENST00000360413 MIER1Q8N108 512 aa17.31■□□□□ 0.36
SRGAP3-201ENST00000360413 GOLGA6L6A8MZA4 724 aa17.31■□□□□ 0.36
SRGAP3-201ENST00000360413 CASC1Q6TDU7 716 aa17.31■□□□□ 0.36
SRGAP3-201ENST00000360413 NRDCO43847 1150 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms