RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 NISCHQ9Y2I1 1504 aa29.82■■■□□ 2.36
CD48-201ENST00000368045 CCDC180Q9P1Z9 1646 aa25.47■■□□□ 1.67
CD48-201ENST00000368045 ZCCHC6Q5VYS8 1495 aaKnown RBP25.25■■□□□ 1.63
CD48-201ENST00000368045 SHROOM4Q9ULL8 1493 aa25.06■■□□□ 1.6
CD48-201ENST00000368045 DCAF1Q9Y4B6 1507 aa24.66■■□□□ 1.54
CD48-201ENST00000368045 SUPT5HO00267 1087 aaKnown RBP24.61■■□□□ 1.53
CD48-201ENST00000368045 DCAF8L2P0C7V8 631 aa24.35■■□□□ 1.49
CD48-201ENST00000368045 CHIC1Q5VXU3 224 aa24.08■■□□□ 1.45
CD48-201ENST00000368045 MYO15BQ96JP2 1530 aa23.99■■□□□ 1.43
CD48-201ENST00000368045 ABCC9O60706 1549 aa23.82■■□□□ 1.4
CD48-201ENST00000368045 SCRIBQ14160 1630 aa23.61■■□□□ 1.37
CD48-201ENST00000368045 RSF1Q96T23 1441 aaPredicted RBP23.54■■□□□ 1.36
CD48-201ENST00000368045 NACADO15069 1562 aa23.54■■□□□ 1.36
CD48-201ENST00000368045 RB1CC1Q8TDY2 1594 aa23.35■■□□□ 1.33
CD48-201ENST00000368045 HRCP23327 699 aa23.35■■□□□ 1.33
CD48-201ENST00000368045 LOC105371045A0A1W2PR82 267 aa23.19■■□□□ 1.3
CD48-201ENST00000368045 PCGF6Q9BYE7 350 aa23.18■■□□□ 1.3
CD48-201ENST00000368045 CECR2Q9BXF3 1484 aa23.1■■□□□ 1.29
CD48-201ENST00000368045 MROH2BQ7Z745 1585 aa23.09■■□□□ 1.29
CD48-201ENST00000368045 TRIM41Q8WV44 630 aa23.06■■□□□ 1.28
CD48-201ENST00000368045 TRIM26Q12899 539 aaPredicted RBP22.94■■□□□ 1.26
CD48-201ENST00000368045 BAZ1AQ9NRL2 1556 aaPredicted RBP22.94■■□□□ 1.26
CD48-201ENST00000368045 WIZO95785 1651 aa22.91■■□□□ 1.26
CD48-201ENST00000368045 EIF4G1Q04637 1599 aaKnown RBP22.75■■□□□ 1.23
CD48-201ENST00000368045 TOP2AP11388 1531 aaKnown RBP22.73■■□□□ 1.23
CD48-201ENST00000368045 SMARCA4P51532 1647 aa22.69■■□□□ 1.22
CD48-201ENST00000368045 FAM9AQ8IZU1 332 aaPredicted RBP22.67■■□□□ 1.22
CD48-201ENST00000368045 PPARGC1BQ86YN6 1023 aaKnown RBP22.6■■□□□ 1.21
CD48-201ENST00000368045 UNC13AQ9UPW8 1703 aa22.59■■□□□ 1.21
CD48-201ENST00000368045 ZEB1P37275 1124 aaPredicted RBP22.58■■□□□ 1.2
CD48-201ENST00000368045 CCDC88BA6NC98 1476 aa22.53■■□□□ 1.2
CD48-201ENST00000368045 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
CD48-201ENST00000368045 BICRAQ9NZM4 1560 aa22.39■■□□□ 1.18
CD48-201ENST00000368045 PEG3Q9GZU2 1588 aa22.38■■□□□ 1.17
CD48-201ENST00000368045 EEA1Q15075 1411 aa22.35■■□□□ 1.17
CD48-201ENST00000368045 ABCC8Q09428 1581 aa22.34■■□□□ 1.17
CD48-201ENST00000368045 EHMT2Q96KQ7 1210 aa22.31■■□□□ 1.16
CD48-201ENST00000368045 WRNQ14191 1432 aaPredicted RBP eCLIP22.26■■□□□ 1.15
CD48-201ENST00000368045 TNIKQ9UKE5 1360 aa22.21■■□□□ 1.15
CD48-201ENST00000368045 PABPN1Q86U42 306 aaKnown RBP eCLIP22.2■■□□□ 1.14
CD48-201ENST00000368045 SOGA1O94964 1423 aa22.17■■□□□ 1.14
CD48-201ENST00000368045 CEP162Q5TB80 1403 aa22.15■■□□□ 1.14
CD48-201ENST00000368045 CSRNP3Q8WYN3 585 aa22.13■■□□□ 1.13
CD48-201ENST00000368045 ATAD2BQ9ULI0 1458 aa22.11■■□□□ 1.13
CD48-201ENST00000368045 GOLGA3Q08378 1498 aa22.07■■□□□ 1.12
CD48-201ENST00000368045 BAZ1BQ9UIG0 1483 aaKnown RBP22.04■■□□□ 1.12
CD48-201ENST00000368045 RUSC2Q8N2Y8 1516 aa22.01■■□□□ 1.11
CD48-201ENST00000368045 CEP164Q9UPV0 1460 aa21.97■■□□□ 1.11
CD48-201ENST00000368045 KIF21BO75037 1637 aa21.96■■□□□ 1.11
CD48-201ENST00000368045 SYNJ1O43426 1573 aa21.96■■□□□ 1.11
CD48-201ENST00000368045 UBTFP17480 764 aaKnown RBP21.94■■□□□ 1.1
CD48-201ENST00000368045 CCER1Q8TC90 406 aaPredicted RBP21.88■■□□□ 1.09
CD48-201ENST00000368045 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.83■■□□□ 1.09
CD48-201ENST00000368045 TOP2BQ02880 1626 aa21.79■■□□□ 1.08
CD48-201ENST00000368045 HMGXB3Q12766 1538 aa21.78■■□□□ 1.08
CD48-201ENST00000368045 NCAPD3P42695 1498 aa21.76■■□□□ 1.07
CD48-201ENST00000368045 CLIP1P30622 1438 aa21.76■■□□□ 1.07
CD48-201ENST00000368045 BIVM-ERCC5R4GMW8 1640 aa21.73■■□□□ 1.07
CD48-201ENST00000368045 VPS8Q8N3P4 1428 aa21.71■■□□□ 1.07
CD48-201ENST00000368045 RAPGEF2Q9Y4G8 1499 aa21.67■■□□□ 1.06
CD48-201ENST00000368045 ERICH3Q5RHP9 1530 aa21.64■■□□□ 1.06
CD48-201ENST00000368045 TTBK1Q5TCY1 1321 aaPredicted RBP21.63■■□□□ 1.05
CD48-201ENST00000368045 PRXQ9BXM0 1461 aa21.58■■□□□ 1.05
CD48-201ENST00000368045 CFTRP13569 1480 aa21.55■■□□□ 1.04
CD48-201ENST00000368045 APLP2Q06481 763 aa21.53■■□□□ 1.04
CD48-201ENST00000368045 CUX1P39880 1505 aa21.52■■□□□ 1.04
CD48-201ENST00000368045 KIF27Q86VH2 1401 aa21.48■■□□□ 1.03
CD48-201ENST00000368045 DIEXFQ68CQ4 756 aaKnown RBP21.46■■□□□ 1.03
CD48-201ENST00000368045 ARAP1Q96P48 1450 aa21.41■■□□□ 1.02
CD48-201ENST00000368045 SCAF1Q9H7N4 1312 aaKnown RBP21.38■■□□□ 1.01
CD48-201ENST00000368045 PRDM2Q13029 1718 aa21.38■■□□□ 1.01
CD48-201ENST00000368045 ZNF316A6NFI3 1004 aaPredicted RBP21.37■■□□□ 1.01
CD48-201ENST00000368045 HNRNPUL2Q1KMD3 747 aaKnown RBP21.37■■□□□ 1.01
CD48-201ENST00000368045 ACIN1Q9UKV3 1341 aaKnown RBP21.3■■□□□ 1
CD48-201ENST00000368045 CLSPNQ9HAW4 1339 aa21.29■■□□□ 1
CD48-201ENST00000368045 CADPSQ9ULU8 1353 aa21.28■■□□□ 1
CD48-201ENST00000368045 CENPBP07199 599 aaPredicted RBP21.27■■□□□ 1
CD48-201ENST00000368045 RANGAP1P46060 587 aaPredicted RBP21.27■■□□□ 1
CD48-201ENST00000368045 RRBP1Q9P2E9 1410 aaKnown RBP21.23■□□□□ 0.99
CD48-201ENST00000368045 ARHGAP35Q9NRY4 1499 aa21.22■□□□□ 0.99
CD48-201ENST00000368045 PELP1Q8IZL8 1130 aaKnown RBP21.21■□□□□ 0.99
CD48-201ENST00000368045 IGF1RP08069 1367 aa21.2■□□□□ 0.98
CD48-201ENST00000368045 CUX2O14529 1486 aa21.2■□□□□ 0.98
CD48-201ENST00000368045 NEUROD1Q13562 356 aa21.17■□□□□ 0.98
CD48-201ENST00000368045 MAP3K1Q13233 1512 aa21.16■□□□□ 0.98
CD48-201ENST00000368045 KANK4Q5T7N3 995 aaPredicted RBP21.15■□□□□ 0.98
CD48-201ENST00000368045 FGD5Q6ZNL6 1462 aa21.13■□□□□ 0.97
CD48-201ENST00000368045 DHX57Q6P158 1386 aaKnown RBP21.12■□□□□ 0.97
CD48-201ENST00000368045 CARMIL1Q5VZK9 1371 aa21.11■□□□□ 0.97
CD48-201ENST00000368045 CCNB3Q8WWL7 1395 aa21.08■□□□□ 0.97
CD48-201ENST00000368045 CC2D2AQ9P2K1 1620 aa21.06■□□□□ 0.96
CD48-201ENST00000368045 FANCD2Q9BXW9 1451 aa21.04■□□□□ 0.96
CD48-201ENST00000368045 TIAM1Q13009 1591 aa21.03■□□□□ 0.96
CD48-201ENST00000368045 DNMBPQ6XZF7 1577 aa21.01■□□□□ 0.95
CD48-201ENST00000368045 FHAD1B1AJZ9 1412 aa21■□□□□ 0.95
CD48-201ENST00000368045 ABCA10Q8WWZ4 1543 aa20.98■□□□□ 0.95
CD48-201ENST00000368045 GTF3C3Q9Y5Q9 886 aa20.95■□□□□ 0.94
CD48-201ENST00000368045 LRRC9Q6ZRR7 1453 aa20.94■□□□□ 0.94
CD48-201ENST00000368045 MIER1Q8N108 512 aa20.94■□□□□ 0.94
CD48-201ENST00000368045 EFCAB5A4FU69 1503 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms