RNA–Protein interactions for RNA: ENST00000458610.6

CD28-203, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-203ENST00000458610 NISCHQ9Y2I1 1504 aa38.95■■■■□ 3.83
CD28-203ENST00000458610 CCDC180Q9P1Z9 1646 aa34.59■■■■□ 3.13
CD28-203ENST00000458610 ABCC9O60706 1549 aa33.91■■■■□ 3.02
CD28-203ENST00000458610 DCAF8L2P0C7V8 631 aa32.72■■■□□ 2.83
CD28-203ENST00000458610 RB1CC1Q8TDY2 1594 aa32.65■■■□□ 2.82
CD28-203ENST00000458610 NACADO15069 1562 aa32.62■■■□□ 2.81
CD28-203ENST00000458610 MYO15BQ96JP2 1530 aa32.43■■■□□ 2.78
CD28-203ENST00000458610 ZCCHC6Q5VYS8 1495 aaKnown RBP32.41■■■□□ 2.78
CD28-203ENST00000458610 DCAF1Q9Y4B6 1507 aa32.26■■■□□ 2.75
CD28-203ENST00000458610 PABPN1Q86U42 306 aaKnown RBP eCLIP31.74■■■□□ 2.67
CD28-203ENST00000458610 UNC13AQ9UPW8 1703 aa31.69■■■□□ 2.66
CD28-203ENST00000458610 BICRAQ9NZM4 1560 aa31.54■■■□□ 2.64
CD28-203ENST00000458610 SCRIBQ14160 1630 aa31.53■■■□□ 2.64
CD28-203ENST00000458610 SHROOM4Q9ULL8 1493 aa31.37■■■□□ 2.61
CD28-203ENST00000458610 DNAJC5BQ9UF47 199 aa31.14■■■□□ 2.58
CD28-203ENST00000458610 EIF4G1Q04637 1599 aaKnown RBP30.76■■■□□ 2.52
CD28-203ENST00000458610 CC2D2AQ9P2K1 1620 aa30.64■■■□□ 2.5
CD28-203ENST00000458610 CECR2Q9BXF3 1484 aa30.51■■■□□ 2.48
CD28-203ENST00000458610 BAZ1AQ9NRL2 1556 aaPredicted RBP30.22■■■□□ 2.43
CD28-203ENST00000458610 SMARCA4P51532 1647 aa30.18■■■□□ 2.42
CD28-203ENST00000458610 NCAPD3P42695 1498 aa30.12■■■□□ 2.41
CD28-203ENST00000458610 ATAD2BQ9ULI0 1458 aa30.09■■■□□ 2.41
CD28-203ENST00000458610 SMARCA2P51531 1590 aa30.08■■■□□ 2.41
CD28-203ENST00000458610 MROH2BQ7Z745 1585 aa29.98■■■□□ 2.39
CD28-203ENST00000458610 PEG3Q9GZU2 1588 aa29.9■■■□□ 2.38
CD28-203ENST00000458610 HMGXB3Q12766 1538 aa29.9■■■□□ 2.38
CD28-203ENST00000458610 BAZ1BQ9UIG0 1483 aaKnown RBP29.86■■■□□ 2.37
CD28-203ENST00000458610 RSF1Q96T23 1441 aaPredicted RBP29.69■■■□□ 2.34
CD28-203ENST00000458610 WIZO95785 1651 aa29.61■■■□□ 2.33
CD28-203ENST00000458610 TOP2AP11388 1531 aaKnown RBP29.36■■■□□ 2.29
CD28-203ENST00000458610 ERCC6Q03468 1493 aa29.3■■■□□ 2.28
CD28-203ENST00000458610 NESP48681 1621 aa29.29■■■□□ 2.28
CD28-203ENST00000458610 LAMC3Q9Y6N6 1575 aa29.28■■■□□ 2.28
CD28-203ENST00000458610 CADPSQ9ULU8 1353 aa29.26■■■□□ 2.28
CD28-203ENST00000458610 PDS5BQ9NTI5 1447 aa29.19■■■□□ 2.26
CD28-203ENST00000458610 CCDC88BA6NC98 1476 aa29.04■■■□□ 2.24
CD28-203ENST00000458610 CFTRP13569 1480 aa29.04■■■□□ 2.24
CD28-203ENST00000458610 SUPT5HO00267 1087 aaKnown RBP29.01■■■□□ 2.23
CD28-203ENST00000458610 CUX2O14529 1486 aa28.99■■■□□ 2.23
CD28-203ENST00000458610 KIF21AQ7Z4S6 1674 aa28.87■■■□□ 2.21
CD28-203ENST00000458610 FANCD2Q9BXW9 1451 aa28.87■■■□□ 2.21
CD28-203ENST00000458610 CEP164Q9UPV0 1460 aa28.85■■■□□ 2.21
CD28-203ENST00000458610 THOC2Q8NI27 1593 aaKnown RBP28.8■■■□□ 2.2
CD28-203ENST00000458610 MRC2Q9UBG0 1479 aa28.8■■■□□ 2.2
CD28-203ENST00000458610 PRDM2Q13029 1718 aa28.66■■■□□ 2.18
CD28-203ENST00000458610 WDR62O43379 1518 aa28.66■■■□□ 2.18
CD28-203ENST00000458610 URB2Q14146 1524 aaKnown RBP28.53■■■□□ 2.16
CD28-203ENST00000458610 ABCC8Q09428 1581 aa28.5■■■□□ 2.15
CD28-203ENST00000458610 TOPBP1Q92547 1522 aa28.38■■■□□ 2.13
CD28-203ENST00000458610 DNMBPQ6XZF7 1577 aa28.34■■■□□ 2.13
CD28-203ENST00000458610 IFT140Q96RY7 1462 aa28.27■■■□□ 2.12
CD28-203ENST00000458610 DNAJC5Q9H3Z4 198 aa28.18■■■□□ 2.1
CD28-203ENST00000458610 POLA1P09884 1462 aaPredicted RBP28.14■■■□□ 2.09
CD28-203ENST00000458610 CUX1P39880 1505 aa28.12■■■□□ 2.09
CD28-203ENST00000458610 SOGA1O94964 1423 aa28.11■■■□□ 2.09
CD28-203ENST00000458610 FGD5Q6ZNL6 1462 aa28.07■■■□□ 2.08
CD28-203ENST00000458610 ZNF608Q9ULD9 1512 aaPredicted RBP28.05■■■□□ 2.08
CD28-203ENST00000458610 WRNQ14191 1432 aaPredicted RBP eCLIP28.03■■■□□ 2.08
CD28-203ENST00000458610 TARBP1Q13395 1621 aaKnown RBP28.02■■■□□ 2.08
CD28-203ENST00000458610 RAD54L2Q9Y4B4 1467 aa28.01■■■□□ 2.07
CD28-203ENST00000458610 AQRO60306 1485 aaKnown RBP eCLIP27.95■■■□□ 2.06
CD28-203ENST00000458610 TDRD9Q8NDG6 1382 aaKnown RBP27.92■■■□□ 2.06
CD28-203ENST00000458610 EIF4G3O43432 1585 aaKnown RBP27.9■■■□□ 2.06
CD28-203ENST00000458610 OSCARQ8IYS5 282 aa27.9■■■□□ 2.06
CD28-203ENST00000458610 TOP2BQ02880 1626 aa27.89■■■□□ 2.06
CD28-203ENST00000458610 WDR97A6NE52 1622 aa27.89■■■□□ 2.05
CD28-203ENST00000458610 BIVM-ERCC5R4GMW8 1640 aa27.85■■■□□ 2.05
CD28-203ENST00000458610 ABCA10Q8WWZ4 1543 aa27.82■■■□□ 2.04
CD28-203ENST00000458610 SYNJ1O43426 1573 aa27.82■■■□□ 2.04
CD28-203ENST00000458610 GRIN2BQ13224 1484 aa27.76■■■□□ 2.04
CD28-203ENST00000458610 GAPVD1Q14C86 1478 aa27.75■■■□□ 2.03
CD28-203ENST00000458610 FBLN2P98095 1184 aa27.73■■■□□ 2.03
CD28-203ENST00000458610 CHMP7Q8WUX9 453 aaPredicted RBP27.68■■■□□ 2.02
CD28-203ENST00000458610 MAGI1Q96QZ7 1491 aaPredicted RBP27.68■■■□□ 2.02
CD28-203ENST00000458610 SNAPC4Q5SXM2 1469 aa27.66■■■□□ 2.02
CD28-203ENST00000458610 ABCA5Q8WWZ7 1642 aa27.63■■■□□ 2.01
CD28-203ENST00000458610 SYNJ2O15056 1496 aa27.57■■■□□ 2
CD28-203ENST00000458610 PBRM1Q86U86 1689 aa27.55■■■□□ 2
CD28-203ENST00000458610 CHD1O14646 1710 aa27.52■■■□□ 2
CD28-203ENST00000458610 KIF27Q86VH2 1401 aa27.5■■□□□ 1.99
CD28-203ENST00000458610 ERICH3Q5RHP9 1530 aa27.49■■□□□ 1.99
CD28-203ENST00000458610 TRIM41Q8WV44 630 aa27.46■■□□□ 1.99
CD28-203ENST00000458610 FHAD1B1AJZ9 1412 aa27.46■■□□□ 1.99
CD28-203ENST00000458610 ADAMTS12P58397 1594 aa27.37■■□□□ 1.97
CD28-203ENST00000458610 GRIN2AQ12879 1464 aa27.36■■□□□ 1.97
CD28-203ENST00000458610 IGF1RP08069 1367 aa27.35■■□□□ 1.97
CD28-203ENST00000458610 CLASP1Q7Z460 1538 aa27.28■■□□□ 1.96
CD28-203ENST00000458610 ARHGEF11O15085 1522 aa27.27■■□□□ 1.96
CD28-203ENST00000458610 NUP160Q12769 1436 aa27.24■■□□□ 1.95
CD28-203ENST00000458610 RIMBP3CA6NJZ7 1639 aa27.23■■□□□ 1.95
CD28-203ENST00000458610 RIMBP3BA6NNM3 1639 aa27.23■■□□□ 1.95
CD28-203ENST00000458610 RIMBP3Q9UFD9 1639 aa27.23■■□□□ 1.95
CD28-203ENST00000458610 CARMIL1Q5VZK9 1371 aa27.22■■□□□ 1.95
CD28-203ENST00000458610 CUL7Q14999 1698 aa27.21■■□□□ 1.95
CD28-203ENST00000458610 CEP170Q5SW79 1584 aa27.15■■□□□ 1.94
CD28-203ENST00000458610 CYB5RLQ6IPT4 315 aa27.15■■□□□ 1.94
CD28-203ENST00000458610 RUSC2Q8N2Y8 1516 aa27.09■■□□□ 1.93
CD28-203ENST00000458610 JPH4Q96JJ6 628 aa27.08■■□□□ 1.93
CD28-203ENST00000458610 CHIC1Q5VXU3 224 aa27.04■■□□□ 1.92
CD28-203ENST00000458610 ARAP1Q96P48 1450 aa27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms