Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 PELI1-201ENST00000358912 3750 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 LINC02052-202ENST00000427914 2285 ntTSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 SUCLG2-201ENST00000307227 2352 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 LINC00667-205ENST00000582008 3979 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 FYN-203ENST00000368667 2416 ntAPPRIS P4 TSL 5 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 COL11A1-203ENST00000370096 7286 ntAPPRIS P4 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 SLC24A1-202ENST00000339868 5678 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 TIPARP-202ENST00000461166 4181 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 NEFM-204ENST00000518131 2500 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 REL-201ENST00000295025 11255 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 AP1G2-202ENST00000397120 2609 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 PRPF40A-202ENST00000410080 8048 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 RGL4-201ENST00000290691 2885 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 ARHGAP25-201ENST00000409030 2936 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 ARHGAP25-203ENST00000409220 2939 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 LTF-201ENST00000231751 2979 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 ZNF75D-201ENST00000370764 2977 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 SLIT2-201ENST00000273739 5132 ntTSL 5 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 AC009533.1-201ENST00000539757 3158 ntBASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 NR3C1-204ENST00000394466 3245 ntAPPRIS ALT1 TSL 5 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 ZNF213-AS1-204ENST00000572691 3232 ntTSL 5 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 OSBPL7-202ENST00000392507 3349 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 SLC45A4-202ENST00000517878 3470 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 SEMA6D-201ENST00000316364 6099 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 HERC6-201ENST00000264346 3779 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 EPHB4-202ENST00000360620 3789 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 APLF-201ENST00000303795 3847 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 PMS2P2-201ENST00000425039 1128 ntBASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 CNP-204ENST00000472031 1019 ntTSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 AC104187.1-201ENST00000607510 612 ntBASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 AL589743.5-201ENST00000616611 1050 ntBASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 SF1-220ENST00000626028 704 ntTSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 RGPD2-201ENST00000398146 6931 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 PLEKHG4-202ENST00000379344 4513 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 BRD4-203ENST00000371835 4624 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 AL359845.1-201ENST00000458202 1648 ntBASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC7.4□□□□□ -1.22
CDC42SE1Q9NRR8 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 MARK2P9-201ENST00000430958 1727 ntBASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 C9orf3-201ENST00000277198 1966 ntTSL 2 BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 CDK5RAP3-202ENST00000536708 1975 ntTSL 2 BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 CRTAP-201ENST00000320954 6630 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 AC009060.1-202ENST00000502126 2242 ntTSL 2 BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 OS9-202ENST00000315970 2691 ntAPPRIS P4 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 CENPP-201ENST00000375576 3088 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 LIMK1-201ENST00000336180 3219 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 PDE6B-201ENST00000255622 3280 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 DSCR3-201ENST00000309117 3256 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 JUP-202ENST00000393930 3298 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 LINC00319-202ENST00000448049 3507 ntTSL 5 BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 THSD7A-202ENST00000423059 10663 ntAPPRIS P2 TSL 5 BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 TFIP11-204ENST00000407690 3586 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 LINC00664-203ENST00000599078 3760 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 ASPH-203ENST00000379454 5268 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 LRRC55-201ENST00000497933 5410 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CDC42SE1Q9NRR8 GRIA1-209ENST00000518783 5233 ntTSL 2 BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 ACTN2-201ENST00000366578 4863 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 SFI1-203ENST00000400288 4002 ntAPPRIS P4 TSL 2 BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 FAM78A-202ENST00000372269 3659 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 NLRP2-209ENST00000537859 3507 ntAPPRIS ALT2 TSL 2 BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 SLC25A13-202ENST00000416240 3192 ntAPPRIS ALT1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 RAB7B-202ENST00000617991 3014 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 INSC-201ENST00000379554 2954 ntAPPRIS P4 TSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 ZBTB20-212ENST00000474710 2757 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 C14orf159-203ENST00000412671 2591 ntAPPRIS ALT1 TSL 5 BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 DDX27-206ENST00000618172 2567 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 TPTE-205ENST00000622113 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 ICK-202ENST00000356971 6227 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC7.39□□□□□ -1.23
CDC42SE1Q9NRR8 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC7.39□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms