RNA–Protein interactions for RNA: ENST00000255622.10

PDE6B-201, Transcript of phosphodiesterase 6B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDE6B, Length 3,280 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6B-201ENST00000255622 NISCHQ9Y2I1 1504 aa23.2■■□□□ 1.3
PDE6B-201ENST00000255622 SHROOM4Q9ULL8 1493 aa19.95■□□□□ 0.78
PDE6B-201ENST00000255622 CCDC180Q9P1Z9 1646 aa19.67■□□□□ 0.74
PDE6B-201ENST00000255622 ZCCHC6Q5VYS8 1495 aaKnown RBP19.62■□□□□ 0.73
PDE6B-201ENST00000255622 SUPT5HO00267 1087 aaKnown RBP19.52■□□□□ 0.72
PDE6B-201ENST00000255622 DCAF8L2P0C7V8 631 aa19.37■□□□□ 0.69
PDE6B-201ENST00000255622 PELP1Q8IZL8 1130 aaKnown RBP19.33■□□□□ 0.69
PDE6B-201ENST00000255622 MYT1Q01538 1121 aa18.95■□□□□ 0.62
PDE6B-201ENST00000255622 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
PDE6B-201ENST00000255622 MYO15BQ96JP2 1530 aa18.92■□□□□ 0.62
PDE6B-201ENST00000255622 CHIC1Q5VXU3 224 aa18.92■□□□□ 0.62
PDE6B-201ENST00000255622 SCRIBQ14160 1630 aa18.57■□□□□ 0.56
PDE6B-201ENST00000255622 ABCC9O60706 1549 aa18.53■□□□□ 0.56
PDE6B-201ENST00000255622 LOC105371045A0A1W2PR82 267 aa18.44■□□□□ 0.54
PDE6B-201ENST00000255622 PCGF6Q9BYE7 350 aa18.39■□□□□ 0.53
PDE6B-201ENST00000255622 RSF1Q96T23 1441 aaPredicted RBP18.39■□□□□ 0.53
PDE6B-201ENST00000255622 HRCP23327 699 aa18.32■□□□□ 0.52
PDE6B-201ENST00000255622 RB1CC1Q8TDY2 1594 aa18.25■□□□□ 0.51
PDE6B-201ENST00000255622 PRKCSHP14314 528 aaPredicted RBP18.2■□□□□ 0.5
PDE6B-201ENST00000255622 NACADO15069 1562 aa18.18■□□□□ 0.5
PDE6B-201ENST00000255622 CECR2Q9BXF3 1484 aa18.17■□□□□ 0.5
PDE6B-201ENST00000255622 TRIM41Q8WV44 630 aa18.12■□□□□ 0.49
PDE6B-201ENST00000255622 MROH2BQ7Z745 1585 aa18.09■□□□□ 0.49
PDE6B-201ENST00000255622 PPARGC1BQ86YN6 1023 aaKnown RBP18.08■□□□□ 0.48
PDE6B-201ENST00000255622 TTBK1Q5TCY1 1321 aaPredicted RBP18.08■□□□□ 0.48
PDE6B-201ENST00000255622 FAM9AQ8IZU1 332 aaPredicted RBP18.07■□□□□ 0.48
PDE6B-201ENST00000255622 WIZO95785 1651 aa18.01■□□□□ 0.47
PDE6B-201ENST00000255622 EHMT2Q96KQ7 1210 aa18■□□□□ 0.47
PDE6B-201ENST00000255622 TRIM26Q12899 539 aaPredicted RBP17.95■□□□□ 0.46
PDE6B-201ENST00000255622 SCAF1Q9H7N4 1312 aaKnown RBP17.87■□□□□ 0.45
PDE6B-201ENST00000255622 BAZ1AQ9NRL2 1556 aaPredicted RBP17.83■□□□□ 0.45
PDE6B-201ENST00000255622 BCL11AQ9H165 835 aa17.81■□□□□ 0.44
PDE6B-201ENST00000255622 UNC13AQ9UPW8 1703 aa17.73■□□□□ 0.43
PDE6B-201ENST00000255622 EIF4G1Q04637 1599 aaKnown RBP17.72■□□□□ 0.43
PDE6B-201ENST00000255622 SMARCA4P51532 1647 aa17.68■□□□□ 0.42
PDE6B-201ENST00000255622 TOP2AP11388 1531 aaKnown RBP17.65■□□□□ 0.42
PDE6B-201ENST00000255622 ABCC8Q09428 1581 aa17.64■□□□□ 0.41
PDE6B-201ENST00000255622 ERICH6Q7L0X2 663 aa17.64■□□□□ 0.41
PDE6B-201ENST00000255622 CCDC88BA6NC98 1476 aa17.62■□□□□ 0.41
PDE6B-201ENST00000255622 PABPN1Q86U42 306 aaKnown RBP eCLIP17.59■□□□□ 0.41
PDE6B-201ENST00000255622 SMARCA2P51531 1590 aa17.59■□□□□ 0.41
PDE6B-201ENST00000255622 BICRAQ9NZM4 1560 aa17.48■□□□□ 0.39
PDE6B-201ENST00000255622 ZEB1P37275 1124 aaPredicted RBP17.47■□□□□ 0.39
PDE6B-201ENST00000255622 SOGA1O94964 1423 aa17.46■□□□□ 0.39
PDE6B-201ENST00000255622 SLC24A1O60721 1099 aa17.43■□□□□ 0.38
PDE6B-201ENST00000255622 APLP2Q06481 763 aa17.4■□□□□ 0.38
PDE6B-201ENST00000255622 RUSC2Q8N2Y8 1516 aa17.39■□□□□ 0.38
PDE6B-201ENST00000255622 CEP162Q5TB80 1403 aa17.34■□□□□ 0.37
PDE6B-201ENST00000255622 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.34■□□□□ 0.37
PDE6B-201ENST00000255622 CSRNP3Q8WYN3 585 aa17.29■□□□□ 0.36
PDE6B-201ENST00000255622 PEG3Q9GZU2 1588 aa17.28■□□□□ 0.36
PDE6B-201ENST00000255622 UBTFP17480 764 aaKnown RBP17.27■□□□□ 0.36
PDE6B-201ENST00000255622 WRNQ14191 1432 aaPredicted RBP eCLIP17.26■□□□□ 0.35
PDE6B-201ENST00000255622 TNIKQ9UKE5 1360 aa17.26■□□□□ 0.35
PDE6B-201ENST00000255622 CCER1Q8TC90 406 aaPredicted RBP17.23■□□□□ 0.35
PDE6B-201ENST00000255622 SYNJ1O43426 1573 aa17.23■□□□□ 0.35
PDE6B-201ENST00000255622 ATAD2BQ9ULI0 1458 aa17.22■□□□□ 0.35
PDE6B-201ENST00000255622 EEA1Q15075 1411 aa17.22■□□□□ 0.35
PDE6B-201ENST00000255622 CENPBP07199 599 aaPredicted RBP17.21■□□□□ 0.35
PDE6B-201ENST00000255622 BAZ1BQ9UIG0 1483 aaKnown RBP17.19■□□□□ 0.34
PDE6B-201ENST00000255622 GOLGA3Q08378 1498 aa17.17■□□□□ 0.34
PDE6B-201ENST00000255622 GTF3C3Q9Y5Q9 886 aa17.08■□□□□ 0.32
PDE6B-201ENST00000255622 CEP164Q9UPV0 1460 aa17.07■□□□□ 0.32
PDE6B-201ENST00000255622 RANGAP1P46060 587 aaPredicted RBP17.05■□□□□ 0.32
PDE6B-201ENST00000255622 KIF21BO75037 1637 aa17.04■□□□□ 0.32
PDE6B-201ENST00000255622 RAPGEF2Q9Y4G8 1499 aa17.02■□□□□ 0.31
PDE6B-201ENST00000255622 CLIP1P30622 1438 aa17.01■□□□□ 0.31
PDE6B-201ENST00000255622 ACIN1Q9UKV3 1341 aaKnown RBP16.97■□□□□ 0.31
PDE6B-201ENST00000255622 TOP2BQ02880 1626 aa16.96■□□□□ 0.3
PDE6B-201ENST00000255622 NEUROD1Q13562 356 aa16.94■□□□□ 0.3
PDE6B-201ENST00000255622 HNRNPUL2Q1KMD3 747 aaKnown RBP16.93■□□□□ 0.3
PDE6B-201ENST00000255622 VPS8Q8N3P4 1428 aa16.92■□□□□ 0.3
PDE6B-201ENST00000255622 DIEXFQ68CQ4 756 aaKnown RBP16.88■□□□□ 0.29
PDE6B-201ENST00000255622 BIVM-ERCC5R4GMW8 1640 aa16.88■□□□□ 0.29
PDE6B-201ENST00000255622 NCAPD3P42695 1498 aa16.84■□□□□ 0.29
PDE6B-201ENST00000255622 HMGXB3Q12766 1538 aa16.84■□□□□ 0.29
PDE6B-201ENST00000255622 CUX1P39880 1505 aa16.83■□□□□ 0.28
PDE6B-201ENST00000255622 PRXQ9BXM0 1461 aa16.79■□□□□ 0.28
PDE6B-201ENST00000255622 ANP32EQ9BTT0 268 aa16.78■□□□□ 0.28
PDE6B-201ENST00000255622 EIF5BO60841 1220 aaKnown RBP16.77■□□□□ 0.27
PDE6B-201ENST00000255622 ERICH3Q5RHP9 1530 aa16.75■□□□□ 0.27
PDE6B-201ENST00000255622 ARAP1Q96P48 1450 aa16.75■□□□□ 0.27
PDE6B-201ENST00000255622 CFTRP13569 1480 aa16.74■□□□□ 0.27
PDE6B-201ENST00000255622 ZNF316A6NFI3 1004 aaPredicted RBP16.73■□□□□ 0.27
PDE6B-201ENST00000255622 KIF27Q86VH2 1401 aa16.71■□□□□ 0.26
PDE6B-201ENST00000255622 KANK4Q5T7N3 995 aaPredicted RBP16.71■□□□□ 0.26
PDE6B-201ENST00000255622 ANO8Q9HCE9 1232 aaPredicted RBP16.66■□□□□ 0.26
PDE6B-201ENST00000255622 PLEKHG5O94827 1062 aa16.62■□□□□ 0.25
PDE6B-201ENST00000255622 ARHGAP35Q9NRY4 1499 aa16.6■□□□□ 0.25
PDE6B-201ENST00000255622 DAXXQ9UER7 740 aaPredicted RBP16.6■□□□□ 0.25
PDE6B-201ENST00000255622 CUX2O14529 1486 aa16.59■□□□□ 0.25
PDE6B-201ENST00000255622 PRDM2Q13029 1718 aa16.58■□□□□ 0.25
PDE6B-201ENST00000255622 YTHDC1Q96MU7 727 aaKnown RBP16.58■□□□□ 0.24
PDE6B-201ENST00000255622 MIER1Q8N108 512 aa16.56■□□□□ 0.24
PDE6B-201ENST00000255622 IGF1RP08069 1367 aa16.55■□□□□ 0.24
PDE6B-201ENST00000255622 CADPSQ9ULU8 1353 aa16.55■□□□□ 0.24
PDE6B-201ENST00000255622 DHX57Q6P158 1386 aaKnown RBP16.54■□□□□ 0.24
PDE6B-201ENST00000255622 FGD5Q6ZNL6 1462 aa16.53■□□□□ 0.24
PDE6B-201ENST00000255622 ITGAEP38570 1179 aa16.52■□□□□ 0.23
PDE6B-201ENST00000255622 RRBP1Q9P2E9 1410 aaKnown RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms