RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 NISCHQ9Y2I1 1504 aa28.69■■■□□ 2.18
C9orf3-201ENST00000277198 CCDC180Q9P1Z9 1646 aa25.45■■□□□ 1.67
C9orf3-201ENST00000277198 ABCC9O60706 1549 aa25.2■■□□□ 1.62
C9orf3-201ENST00000277198 DCAF8L2P0C7V8 631 aa24.11■■□□□ 1.45
C9orf3-201ENST00000277198 RB1CC1Q8TDY2 1594 aa24.03■■□□□ 1.44
C9orf3-201ENST00000277198 NACADO15069 1562 aa23.98■■□□□ 1.43
C9orf3-201ENST00000277198 ZCCHC6Q5VYS8 1495 aaKnown RBP23.88■■□□□ 1.41
C9orf3-201ENST00000277198 MYO15BQ96JP2 1530 aa23.75■■□□□ 1.39
C9orf3-201ENST00000277198 DCAF1Q9Y4B6 1507 aa23.64■■□□□ 1.37
C9orf3-201ENST00000277198 PABPN1Q86U42 306 aaKnown RBP eCLIP23.58■■□□□ 1.36
C9orf3-201ENST00000277198 UNC13AQ9UPW8 1703 aa23.56■■□□□ 1.36
C9orf3-201ENST00000277198 BICRAQ9NZM4 1560 aa23.42■■□□□ 1.34
C9orf3-201ENST00000277198 SCRIBQ14160 1630 aa23.37■■□□□ 1.33
C9orf3-201ENST00000277198 DNAJC5BQ9UF47 199 aa23.31■■□□□ 1.32
C9orf3-201ENST00000277198 SHROOM4Q9ULL8 1493 aa22.97■■□□□ 1.27
C9orf3-201ENST00000277198 EIF4G1Q04637 1599 aaKnown RBP22.78■■□□□ 1.24
C9orf3-201ENST00000277198 CC2D2AQ9P2K1 1620 aa22.72■■□□□ 1.23
C9orf3-201ENST00000277198 CECR2Q9BXF3 1484 aa22.59■■□□□ 1.21
C9orf3-201ENST00000277198 SMARCA4P51532 1647 aa22.28■■□□□ 1.16
C9orf3-201ENST00000277198 ATAD2BQ9ULI0 1458 aa22.2■■□□□ 1.15
C9orf3-201ENST00000277198 BAZ1AQ9NRL2 1556 aaPredicted RBP22.2■■□□□ 1.14
C9orf3-201ENST00000277198 MROH2BQ7Z745 1585 aa22.17■■□□□ 1.14
C9orf3-201ENST00000277198 NCAPD3P42695 1498 aa22.17■■□□□ 1.14
C9orf3-201ENST00000277198 SMARCA2P51531 1590 aa22.1■■□□□ 1.13
C9orf3-201ENST00000277198 SUPT5HO00267 1087 aaKnown RBP22.05■■□□□ 1.12
C9orf3-201ENST00000277198 HMGXB3Q12766 1538 aa22.02■■□□□ 1.12
C9orf3-201ENST00000277198 PEG3Q9GZU2 1588 aa22.02■■□□□ 1.12
C9orf3-201ENST00000277198 BAZ1BQ9UIG0 1483 aaKnown RBP22■■□□□ 1.11
C9orf3-201ENST00000277198 WIZO95785 1651 aa21.92■■□□□ 1.1
C9orf3-201ENST00000277198 RSF1Q96T23 1441 aaPredicted RBP21.86■■□□□ 1.09
C9orf3-201ENST00000277198 NESP48681 1621 aa21.8■■□□□ 1.08
C9orf3-201ENST00000277198 ERCC6Q03468 1493 aa21.65■■□□□ 1.06
C9orf3-201ENST00000277198 TOP2AP11388 1531 aaKnown RBP21.62■■□□□ 1.05
C9orf3-201ENST00000277198 CHIC1Q5VXU3 224 aa21.61■■□□□ 1.05
C9orf3-201ENST00000277198 LAMC3Q9Y6N6 1575 aa21.56■■□□□ 1.04
C9orf3-201ENST00000277198 CADPSQ9ULU8 1353 aa21.53■■□□□ 1.04
C9orf3-201ENST00000277198 KIF21AQ7Z4S6 1674 aa21.45■■□□□ 1.03
C9orf3-201ENST00000277198 PDS5BQ9NTI5 1447 aa21.43■■□□□ 1.02
C9orf3-201ENST00000277198 CCDC88BA6NC98 1476 aa21.41■■□□□ 1.02
C9orf3-201ENST00000277198 THOC2Q8NI27 1593 aaKnown RBP21.41■■□□□ 1.02
C9orf3-201ENST00000277198 CUX2O14529 1486 aa21.4■■□□□ 1.02
C9orf3-201ENST00000277198 CFTRP13569 1480 aa21.38■■□□□ 1.01
C9orf3-201ENST00000277198 FANCD2Q9BXW9 1451 aa21.31■■□□□ 1
C9orf3-201ENST00000277198 CEP164Q9UPV0 1460 aa21.27■■□□□ 1
C9orf3-201ENST00000277198 MRC2Q9UBG0 1479 aa21.26■□□□□ 0.99
C9orf3-201ENST00000277198 WDR62O43379 1518 aa21.2■□□□□ 0.98
C9orf3-201ENST00000277198 URB2Q14146 1524 aaKnown RBP21.15■□□□□ 0.98
C9orf3-201ENST00000277198 PRDM2Q13029 1718 aa21.12■□□□□ 0.97
C9orf3-201ENST00000277198 HRCP23327 699 aa21.03■□□□□ 0.96
C9orf3-201ENST00000277198 TOPBP1Q92547 1522 aa20.96■□□□□ 0.95
C9orf3-201ENST00000277198 DNAJC5Q9H3Z4 198 aa20.95■□□□□ 0.94
C9orf3-201ENST00000277198 DNMBPQ6XZF7 1577 aa20.88■□□□□ 0.93
C9orf3-201ENST00000277198 PCGF6Q9BYE7 350 aa20.86■□□□□ 0.93
C9orf3-201ENST00000277198 ZNF608Q9ULD9 1512 aaPredicted RBP20.84■□□□□ 0.93
C9orf3-201ENST00000277198 ABCC8Q09428 1581 aa20.82■□□□□ 0.92
C9orf3-201ENST00000277198 LOC105371045A0A1W2PR82 267 aa20.81■□□□□ 0.92
C9orf3-201ENST00000277198 IFT140Q96RY7 1462 aa20.8■□□□□ 0.92
C9orf3-201ENST00000277198 CUX1P39880 1505 aa20.8■□□□□ 0.92
C9orf3-201ENST00000277198 POLA1P09884 1462 aaPredicted RBP20.79■□□□□ 0.92
C9orf3-201ENST00000277198 RAD54L2Q9Y4B4 1467 aa20.75■□□□□ 0.91
C9orf3-201ENST00000277198 TARBP1Q13395 1621 aaKnown RBP20.73■□□□□ 0.91
C9orf3-201ENST00000277198 FGD5Q6ZNL6 1462 aa20.73■□□□□ 0.91
C9orf3-201ENST00000277198 AQRO60306 1485 aaKnown RBP eCLIP20.7■□□□□ 0.9
C9orf3-201ENST00000277198 TRIM41Q8WV44 630 aa20.69■□□□□ 0.9
C9orf3-201ENST00000277198 EIF4G3O43432 1585 aaKnown RBP20.68■□□□□ 0.9
C9orf3-201ENST00000277198 SOGA1O94964 1423 aa20.68■□□□□ 0.9
C9orf3-201ENST00000277198 TRIM26Q12899 539 aaPredicted RBP20.65■□□□□ 0.9
C9orf3-201ENST00000277198 TDRD9Q8NDG6 1382 aaKnown RBP20.64■□□□□ 0.89
C9orf3-201ENST00000277198 SYNJ1O43426 1573 aa20.59■□□□□ 0.89
C9orf3-201ENST00000277198 WRNQ14191 1432 aaPredicted RBP eCLIP20.58■□□□□ 0.89
C9orf3-201ENST00000277198 OSCARQ8IYS5 282 aa20.54■□□□□ 0.88
C9orf3-201ENST00000277198 TOP2BQ02880 1626 aa20.52■□□□□ 0.88
C9orf3-201ENST00000277198 WDR97A6NE52 1622 aa20.51■□□□□ 0.87
C9orf3-201ENST00000277198 BIVM-ERCC5R4GMW8 1640 aa20.5■□□□□ 0.87
C9orf3-201ENST00000277198 SNAPC4Q5SXM2 1469 aa20.47■□□□□ 0.87
C9orf3-201ENST00000277198 ABCA10Q8WWZ4 1543 aa20.47■□□□□ 0.87
C9orf3-201ENST00000277198 FBLN2P98095 1184 aa20.45■□□□□ 0.86
C9orf3-201ENST00000277198 CHD1O14646 1710 aa20.44■□□□□ 0.86
C9orf3-201ENST00000277198 GAPVD1Q14C86 1478 aa20.43■□□□□ 0.86
C9orf3-201ENST00000277198 GRIN2BQ13224 1484 aa20.42■□□□□ 0.86
C9orf3-201ENST00000277198 ABCA5Q8WWZ7 1642 aa20.41■□□□□ 0.86
C9orf3-201ENST00000277198 PBRM1Q86U86 1689 aa20.37■□□□□ 0.85
C9orf3-201ENST00000277198 MAGI1Q96QZ7 1491 aaPredicted RBP20.36■□□□□ 0.85
C9orf3-201ENST00000277198 ZEB1P37275 1124 aaPredicted RBP20.35■□□□□ 0.85
C9orf3-201ENST00000277198 CHMP7Q8WUX9 453 aaPredicted RBP20.33■□□□□ 0.84
C9orf3-201ENST00000277198 PPARGC1BQ86YN6 1023 aaKnown RBP20.31■□□□□ 0.84
C9orf3-201ENST00000277198 SYNJ2O15056 1496 aa20.31■□□□□ 0.84
C9orf3-201ENST00000277198 FAM9AQ8IZU1 332 aaPredicted RBP20.3■□□□□ 0.84
C9orf3-201ENST00000277198 RIMBP3CA6NJZ7 1639 aa20.26■□□□□ 0.83
C9orf3-201ENST00000277198 RIMBP3BA6NNM3 1639 aa20.26■□□□□ 0.83
C9orf3-201ENST00000277198 RIMBP3Q9UFD9 1639 aa20.26■□□□□ 0.83
C9orf3-201ENST00000277198 ARHGEF11O15085 1522 aa20.25■□□□□ 0.83
C9orf3-201ENST00000277198 ADAMTS12P58397 1594 aa20.24■□□□□ 0.83
C9orf3-201ENST00000277198 CLASP1Q7Z460 1538 aa20.21■□□□□ 0.83
C9orf3-201ENST00000277198 ERICH3Q5RHP9 1530 aa20.19■□□□□ 0.82
C9orf3-201ENST00000277198 GRIN2AQ12879 1464 aa20.19■□□□□ 0.82
C9orf3-201ENST00000277198 FHAD1B1AJZ9 1412 aa20.17■□□□□ 0.82
C9orf3-201ENST00000277198 CEP170Q5SW79 1584 aa20.13■□□□□ 0.81
C9orf3-201ENST00000277198 KIF27Q86VH2 1401 aa20.12■□□□□ 0.81
C9orf3-201ENST00000277198 IGF1RP08069 1367 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms