RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 NISCHQ9Y2I1 1504 aa26.93■■□□□ 1.9
LIMK1-201ENST00000336180 SHROOM4Q9ULL8 1493 aa23.24■■□□□ 1.31
LIMK1-201ENST00000336180 DCAF8L2P0C7V8 631 aa23.17■■□□□ 1.3
LIMK1-201ENST00000336180 CCDC180Q9P1Z9 1646 aa22.84■■□□□ 1.25
LIMK1-201ENST00000336180 ZCCHC6Q5VYS8 1495 aaKnown RBP22.63■■□□□ 1.21
LIMK1-201ENST00000336180 SUPT5HO00267 1087 aaKnown RBP22.54■■□□□ 1.2
LIMK1-201ENST00000336180 ABCC9O60706 1549 aa22.16■■□□□ 1.14
LIMK1-201ENST00000336180 DCAF1Q9Y4B6 1507 aa21.81■■□□□ 1.08
LIMK1-201ENST00000336180 SCRIBQ14160 1630 aa21.79■■□□□ 1.08
LIMK1-201ENST00000336180 CHIC1Q5VXU3 224 aa21.42■■□□□ 1.02
LIMK1-201ENST00000336180 NACADO15069 1562 aa21.34■■□□□ 1.01
LIMK1-201ENST00000336180 PABPN1Q86U42 306 aaKnown RBP eCLIP21.28■■□□□ 1
LIMK1-201ENST00000336180 MYO15BQ96JP2 1530 aa21.28■■□□□ 1
LIMK1-201ENST00000336180 CECR2Q9BXF3 1484 aa21.27■■□□□ 1
LIMK1-201ENST00000336180 RSF1Q96T23 1441 aaPredicted RBP21.25■□□□□ 0.99
LIMK1-201ENST00000336180 RB1CC1Q8TDY2 1594 aa21.17■□□□□ 0.98
LIMK1-201ENST00000336180 MROH2BQ7Z745 1585 aa21.06■□□□□ 0.96
LIMK1-201ENST00000336180 EHMT2Q96KQ7 1210 aa21.04■□□□□ 0.96
LIMK1-201ENST00000336180 LOC105371045A0A1W2PR82 267 aa21.02■□□□□ 0.95
LIMK1-201ENST00000336180 FAM9AQ8IZU1 332 aaPredicted RBP20.96■□□□□ 0.95
LIMK1-201ENST00000336180 WIZO95785 1651 aa20.91■□□□□ 0.94
LIMK1-201ENST00000336180 UNC13AQ9UPW8 1703 aa20.84■□□□□ 0.93
LIMK1-201ENST00000336180 TRIM41Q8WV44 630 aa20.83■□□□□ 0.93
LIMK1-201ENST00000336180 BAZ1AQ9NRL2 1556 aaPredicted RBP20.67■□□□□ 0.9
LIMK1-201ENST00000336180 BICRAQ9NZM4 1560 aa20.67■□□□□ 0.9
LIMK1-201ENST00000336180 SMARCA4P51532 1647 aa20.59■□□□□ 0.89
LIMK1-201ENST00000336180 PCGF6Q9BYE7 350 aa20.49■□□□□ 0.87
LIMK1-201ENST00000336180 CCDC88BA6NC98 1476 aa20.48■□□□□ 0.87
LIMK1-201ENST00000336180 TOP2AP11388 1531 aaKnown RBP20.4■□□□□ 0.86
LIMK1-201ENST00000336180 ABCC8Q09428 1581 aa20.4■□□□□ 0.86
LIMK1-201ENST00000336180 SMARCA2P51531 1590 aa20.34■□□□□ 0.85
LIMK1-201ENST00000336180 PPARGC1BQ86YN6 1023 aaKnown RBP20.33■□□□□ 0.84
LIMK1-201ENST00000336180 ATAD2BQ9ULI0 1458 aa20.25■□□□□ 0.83
LIMK1-201ENST00000336180 BAZ1BQ9UIG0 1483 aaKnown RBP20.21■□□□□ 0.83
LIMK1-201ENST00000336180 EIF4G1Q04637 1599 aaKnown RBP20.18■□□□□ 0.82
LIMK1-201ENST00000336180 TTBK1Q5TCY1 1321 aaPredicted RBP20.17■□□□□ 0.82
LIMK1-201ENST00000336180 SOGA1O94964 1423 aa20.13■□□□□ 0.81
LIMK1-201ENST00000336180 RUSC2Q8N2Y8 1516 aa20.09■□□□□ 0.81
LIMK1-201ENST00000336180 RANGAP1P46060 587 aaPredicted RBP20.08■□□□□ 0.8
LIMK1-201ENST00000336180 PEG3Q9GZU2 1588 aa20.02■□□□□ 0.79
LIMK1-201ENST00000336180 UBTFP17480 764 aaKnown RBP20.01■□□□□ 0.79
LIMK1-201ENST00000336180 WRNQ14191 1432 aaPredicted RBP eCLIP19.99■□□□□ 0.79
LIMK1-201ENST00000336180 TRIM26Q12899 539 aaPredicted RBP19.93■□□□□ 0.78
LIMK1-201ENST00000336180 CSRNP3Q8WYN3 585 aa19.93■□□□□ 0.78
LIMK1-201ENST00000336180 HRCP23327 699 aa19.9■□□□□ 0.78
LIMK1-201ENST00000336180 SYNJ1O43426 1573 aa19.89■□□□□ 0.77
LIMK1-201ENST00000336180 NCAPD3P42695 1498 aa19.83■□□□□ 0.77
LIMK1-201ENST00000336180 DNAJC5BQ9UF47 199 aa19.83■□□□□ 0.76
LIMK1-201ENST00000336180 CC2D2AQ9P2K1 1620 aa19.72■□□□□ 0.75
LIMK1-201ENST00000336180 CEP162Q5TB80 1403 aa19.72■□□□□ 0.75
LIMK1-201ENST00000336180 HMGXB3Q12766 1538 aa19.69■□□□□ 0.74
LIMK1-201ENST00000336180 RAPGEF2Q9Y4G8 1499 aa19.6■□□□□ 0.73
LIMK1-201ENST00000336180 TNIKQ9UKE5 1360 aa19.59■□□□□ 0.73
LIMK1-201ENST00000336180 CUX1P39880 1505 aa19.59■□□□□ 0.73
LIMK1-201ENST00000336180 CFTRP13569 1480 aa19.59■□□□□ 0.73
LIMK1-201ENST00000336180 GOLGA3Q08378 1498 aa19.59■□□□□ 0.73
LIMK1-201ENST00000336180 NESP48681 1621 aa19.58■□□□□ 0.72
LIMK1-201ENST00000336180 EEA1Q15075 1411 aa19.57■□□□□ 0.72
LIMK1-201ENST00000336180 CADPSQ9ULU8 1353 aa19.55■□□□□ 0.72
LIMK1-201ENST00000336180 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.53■□□□□ 0.72
LIMK1-201ENST00000336180 TOP2BQ02880 1626 aa19.53■□□□□ 0.72
LIMK1-201ENST00000336180 CEP164Q9UPV0 1460 aa19.49■□□□□ 0.71
LIMK1-201ENST00000336180 PELP1Q8IZL8 1130 aaKnown RBP19.48■□□□□ 0.71
LIMK1-201ENST00000336180 CLIP1P30622 1438 aa19.46■□□□□ 0.71
LIMK1-201ENST00000336180 CUX2O14529 1486 aa19.41■□□□□ 0.7
LIMK1-201ENST00000336180 FANCD2Q9BXW9 1451 aa19.39■□□□□ 0.7
LIMK1-201ENST00000336180 BIVM-ERCC5R4GMW8 1640 aa19.39■□□□□ 0.69
LIMK1-201ENST00000336180 HNRNPUL2Q1KMD3 747 aaKnown RBP19.38■□□□□ 0.69
LIMK1-201ENST00000336180 KIF27Q86VH2 1401 aa19.37■□□□□ 0.69
LIMK1-201ENST00000336180 P3H3Q8IVL6 736 aa19.36■□□□□ 0.69
LIMK1-201ENST00000336180 FGD5Q6ZNL6 1462 aa19.36■□□□□ 0.69
LIMK1-201ENST00000336180 RAD54L2Q9Y4B4 1467 aa19.35■□□□□ 0.69
LIMK1-201ENST00000336180 APLP2Q06481 763 aa19.34■□□□□ 0.69
LIMK1-201ENST00000336180 CCER1Q8TC90 406 aaPredicted RBP19.34■□□□□ 0.69
LIMK1-201ENST00000336180 KIF21BO75037 1637 aa19.34■□□□□ 0.69
LIMK1-201ENST00000336180 ATP1B4Q9UN42 357 aaPredicted RBP19.29■□□□□ 0.68
LIMK1-201ENST00000336180 PRXQ9BXM0 1461 aa19.27■□□□□ 0.68
LIMK1-201ENST00000336180 IGF1RP08069 1367 aa19.26■□□□□ 0.67
LIMK1-201ENST00000336180 KANK4Q5T7N3 995 aaPredicted RBP19.22■□□□□ 0.67
LIMK1-201ENST00000336180 TDRD9Q8NDG6 1382 aaKnown RBP19.22■□□□□ 0.67
LIMK1-201ENST00000336180 VPS8Q8N3P4 1428 aa19.21■□□□□ 0.67
LIMK1-201ENST00000336180 CARMIL1Q5VZK9 1371 aa19.21■□□□□ 0.67
LIMK1-201ENST00000336180 TOPBP1Q92547 1522 aa19.17■□□□□ 0.66
LIMK1-201ENST00000336180 POLA1P09884 1462 aaPredicted RBP19.16■□□□□ 0.66
LIMK1-201ENST00000336180 ITGAEP38570 1179 aa19.16■□□□□ 0.66
LIMK1-201ENST00000336180 ARAP1Q96P48 1450 aa19.16■□□□□ 0.66
LIMK1-201ENST00000336180 PRDM2Q13029 1718 aa19.14■□□□□ 0.65
LIMK1-201ENST00000336180 URB2Q14146 1524 aaKnown RBP19.14■□□□□ 0.65
LIMK1-201ENST00000336180 ZEB1P37275 1124 aaPredicted RBP19.1■□□□□ 0.65
LIMK1-201ENST00000336180 ERICH3Q5RHP9 1530 aa19.09■□□□□ 0.65
LIMK1-201ENST00000336180 MYT1Q01538 1121 aa19.09■□□□□ 0.65
LIMK1-201ENST00000336180 DNMBPQ6XZF7 1577 aa19.07■□□□□ 0.64
LIMK1-201ENST00000336180 ARHGAP35Q9NRY4 1499 aa19.07■□□□□ 0.64
LIMK1-201ENST00000336180 PDS5BQ9NTI5 1447 aa19.05■□□□□ 0.64
LIMK1-201ENST00000336180 KIF21AQ7Z4S6 1674 aa19.01■□□□□ 0.63
LIMK1-201ENST00000336180 ARID3CA6NKF2 412 aa19.01■□□□□ 0.63
LIMK1-201ENST00000336180 LAMC3Q9Y6N6 1575 aa19.01■□□□□ 0.63
LIMK1-201ENST00000336180 FHOD3Q2V2M9 1422 aa18.98■□□□□ 0.63
LIMK1-201ENST00000336180 ABCA10Q8WWZ4 1543 aa18.96■□□□□ 0.63
LIMK1-201ENST00000336180 AQRO60306 1485 aaKnown RBP eCLIP18.96■□□□□ 0.633e-6■■■■□ 24
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms