RNA–Protein interactions for RNA: ENST00000518131.5

NEFM-204, Transcript of neurofilament medium, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NEFM, Length 2,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEFM-204ENST00000518131 NISCHQ9Y2I1 1504 aa25.91■■□□□ 1.74
NEFM-204ENST00000518131 CCDC180Q9P1Z9 1646 aa22.67■■□□□ 1.22
NEFM-204ENST00000518131 ABCC9O60706 1549 aa21.72■■□□□ 1.07
NEFM-204ENST00000518131 ZCCHC6Q5VYS8 1495 aaKnown RBP21.69■■□□□ 1.06
NEFM-204ENST00000518131 DCAF8L2P0C7V8 631 aa21.59■■□□□ 1.05
NEFM-204ENST00000518131 DCAF1Q9Y4B6 1507 aa21.44■■□□□ 1.02
NEFM-204ENST00000518131 MYO15BQ96JP2 1530 aa21.31■■□□□ 1
NEFM-204ENST00000518131 NACADO15069 1562 aa21.24■□□□□ 0.99
NEFM-204ENST00000518131 RB1CC1Q8TDY2 1594 aa21.12■□□□□ 0.97
NEFM-204ENST00000518131 SHROOM4Q9ULL8 1493 aa21.05■□□□□ 0.96
NEFM-204ENST00000518131 SUPT5HO00267 1087 aaKnown RBP20.84■□□□□ 0.93
NEFM-204ENST00000518131 SCRIBQ14160 1630 aa20.8■□□□□ 0.92
NEFM-204ENST00000518131 HRCP23327 699 aa20.69■□□□□ 0.9
NEFM-204ENST00000518131 UNC13AQ9UPW8 1703 aa20.51■□□□□ 0.87
NEFM-204ENST00000518131 PABPN1Q86U42 306 aaKnown RBP eCLIP20.47■□□□□ 0.87
NEFM-204ENST00000518131 PPARGC1BQ86YN6 1023 aaKnown RBP20.44■□□□□ 0.86
NEFM-204ENST00000518131 PCGF6Q9BYE7 350 aa20.44■□□□□ 0.86
NEFM-204ENST00000518131 CHIC1Q5VXU3 224 aa20.42■□□□□ 0.86
NEFM-204ENST00000518131 BICRAQ9NZM4 1560 aa20.4■□□□□ 0.86
NEFM-204ENST00000518131 CECR2Q9BXF3 1484 aa20.13■□□□□ 0.81
NEFM-204ENST00000518131 BAZ1AQ9NRL2 1556 aaPredicted RBP20.04■□□□□ 0.8
NEFM-204ENST00000518131 RSF1Q96T23 1441 aaPredicted RBP20.01■□□□□ 0.79
NEFM-204ENST00000518131 LOC105371045A0A1W2PR82 267 aa20■□□□□ 0.79
NEFM-204ENST00000518131 MROH2BQ7Z745 1585 aa19.97■□□□□ 0.79
NEFM-204ENST00000518131 SMARCA4P51532 1647 aa19.93■□□□□ 0.78
NEFM-204ENST00000518131 EIF4G1Q04637 1599 aaKnown RBP19.86■□□□□ 0.77
NEFM-204ENST00000518131 WIZO95785 1651 aa19.76■□□□□ 0.75
NEFM-204ENST00000518131 TRIM26Q12899 539 aaPredicted RBP19.73■□□□□ 0.75
NEFM-204ENST00000518131 ATAD2BQ9ULI0 1458 aa19.72■□□□□ 0.75
NEFM-204ENST00000518131 SMARCA2P51531 1590 aa19.72■□□□□ 0.75
NEFM-204ENST00000518131 PEG3Q9GZU2 1588 aa19.72■□□□□ 0.75
NEFM-204ENST00000518131 NCAPD3P42695 1498 aa19.63■□□□□ 0.73
NEFM-204ENST00000518131 CC2D2AQ9P2K1 1620 aa19.62■□□□□ 0.73
NEFM-204ENST00000518131 BAZ1BQ9UIG0 1483 aaKnown RBP19.61■□□□□ 0.73
NEFM-204ENST00000518131 TOP2AP11388 1531 aaKnown RBP19.6■□□□□ 0.73
NEFM-204ENST00000518131 SCAF1Q9H7N4 1312 aaKnown RBP19.54■□□□□ 0.72
NEFM-204ENST00000518131 HMGXB3Q12766 1538 aa19.53■□□□□ 0.72
NEFM-204ENST00000518131 PELP1Q8IZL8 1130 aaKnown RBP19.43■□□□□ 0.7
NEFM-204ENST00000518131 CCDC88BA6NC98 1476 aa19.41■□□□□ 0.7
NEFM-204ENST00000518131 DNAJC5BQ9UF47 199 aa19.4■□□□□ 0.7
NEFM-204ENST00000518131 ZEB1P37275 1124 aaPredicted RBP19.39■□□□□ 0.69
NEFM-204ENST00000518131 FAM9AQ8IZU1 332 aaPredicted RBP19.3■□□□□ 0.68
NEFM-204ENST00000518131 EHMT2Q96KQ7 1210 aa19.28■□□□□ 0.68
NEFM-204ENST00000518131 TRIM41Q8WV44 630 aa19.22■□□□□ 0.67
NEFM-204ENST00000518131 CADPSQ9ULU8 1353 aa19.12■□□□□ 0.65
NEFM-204ENST00000518131 CFTRP13569 1480 aa19.1■□□□□ 0.65
NEFM-204ENST00000518131 NEUROD1Q13562 356 aa19.07■□□□□ 0.64
NEFM-204ENST00000518131 ACIN1Q9UKV3 1341 aaKnown RBP19.04■□□□□ 0.64
NEFM-204ENST00000518131 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.04■□□□□ 0.64
NEFM-204ENST00000518131 LAMC3Q9Y6N6 1575 aa18.97■□□□□ 0.63
NEFM-204ENST00000518131 NESP48681 1621 aa18.95■□□□□ 0.62
NEFM-204ENST00000518131 GTF3C3Q9Y5Q9 886 aa18.92■□□□□ 0.62
NEFM-204ENST00000518131 PDS5BQ9NTI5 1447 aa18.9■□□□□ 0.62
NEFM-204ENST00000518131 CCER1Q8TC90 406 aaPredicted RBP18.9■□□□□ 0.62
NEFM-204ENST00000518131 FANCD2Q9BXW9 1451 aa18.87■□□□□ 0.61
NEFM-204ENST00000518131 WRNQ14191 1432 aaPredicted RBP eCLIP18.87■□□□□ 0.61
NEFM-204ENST00000518131 ABCC8Q09428 1581 aa18.86■□□□□ 0.61
NEFM-204ENST00000518131 PRDM2Q13029 1718 aa18.85■□□□□ 0.61
NEFM-204ENST00000518131 DIEXFQ68CQ4 756 aaKnown RBP18.83■□□□□ 0.61
NEFM-204ENST00000518131 CEP164Q9UPV0 1460 aa18.79■□□□□ 0.6
NEFM-204ENST00000518131 TTBK1Q5TCY1 1321 aaPredicted RBP18.77■□□□□ 0.6
NEFM-204ENST00000518131 CENPBP07199 599 aaPredicted RBP18.71■□□□□ 0.59
NEFM-204ENST00000518131 SYNJ1O43426 1573 aa18.71■□□□□ 0.58
NEFM-204ENST00000518131 ERCC6Q03468 1493 aa18.7■□□□□ 0.58
NEFM-204ENST00000518131 CUX1P39880 1505 aa18.69■□□□□ 0.58
NEFM-204ENST00000518131 TOP2BQ02880 1626 aa18.68■□□□□ 0.58
NEFM-204ENST00000518131 KIF21AQ7Z4S6 1674 aa18.66■□□□□ 0.58
NEFM-204ENST00000518131 BIVM-ERCC5R4GMW8 1640 aa18.64■□□□□ 0.57
NEFM-204ENST00000518131 DNMBPQ6XZF7 1577 aa18.63■□□□□ 0.57
NEFM-204ENST00000518131 MRC2Q9UBG0 1479 aa18.62■□□□□ 0.57
NEFM-204ENST00000518131 TOPBP1Q92547 1522 aa18.62■□□□□ 0.57
NEFM-204ENST00000518131 URB2Q14146 1524 aaKnown RBP18.61■□□□□ 0.57
NEFM-204ENST00000518131 YTHDC1Q96MU7 727 aaKnown RBP18.58■□□□□ 0.57
NEFM-204ENST00000518131 FGD5Q6ZNL6 1462 aa18.56■□□□□ 0.56
NEFM-204ENST00000518131 MYT1Q01538 1121 aa18.52■□□□□ 0.55
NEFM-204ENST00000518131 POLA1P09884 1462 aaPredicted RBP18.51■□□□□ 0.55
NEFM-204ENST00000518131 SOGA1O94964 1423 aa18.51■□□□□ 0.55
NEFM-204ENST00000518131 WDR62O43379 1518 aa18.5■□□□□ 0.55
NEFM-204ENST00000518131 ZNF316A6NFI3 1004 aaPredicted RBP18.5■□□□□ 0.55
NEFM-204ENST00000518131 EEA1Q15075 1411 aa18.49■□□□□ 0.55
NEFM-204ENST00000518131 CEP162Q5TB80 1403 aa18.45■□□□□ 0.54
NEFM-204ENST00000518131 THOC2Q8NI27 1593 aaKnown RBP18.45■□□□□ 0.54
NEFM-204ENST00000518131 KIF27Q86VH2 1401 aa18.45■□□□□ 0.54
NEFM-204ENST00000518131 RAD54L2Q9Y4B4 1467 aa18.44■□□□□ 0.54
NEFM-204ENST00000518131 MIER1Q8N108 512 aa18.44■□□□□ 0.54
NEFM-204ENST00000518131 CSRNP3Q8WYN3 585 aa18.44■□□□□ 0.54
NEFM-204ENST00000518131 CUX2O14529 1486 aa18.42■□□□□ 0.54
NEFM-204ENST00000518131 RUSC2Q8N2Y8 1516 aa18.41■□□□□ 0.54
NEFM-204ENST00000518131 ABCA10Q8WWZ4 1543 aa18.4■□□□□ 0.54
NEFM-204ENST00000518131 IFT140Q96RY7 1462 aa18.38■□□□□ 0.53
NEFM-204ENST00000518131 TDRD9Q8NDG6 1382 aaKnown RBP18.33■□□□□ 0.53
NEFM-204ENST00000518131 TARBP1Q13395 1621 aaKnown RBP18.32■□□□□ 0.52
NEFM-204ENST00000518131 TNIKQ9UKE5 1360 aa18.29■□□□□ 0.52
NEFM-204ENST00000518131 IGF1RP08069 1367 aa18.28■□□□□ 0.52
NEFM-204ENST00000518131 HNRNPUL2Q1KMD3 747 aaKnown RBP18.28■□□□□ 0.52
NEFM-204ENST00000518131 GAPVD1Q14C86 1478 aa18.28■□□□□ 0.52
NEFM-204ENST00000518131 UBTFP17480 764 aaKnown RBP18.26■□□□□ 0.51
NEFM-204ENST00000518131 WDR97A6NE52 1622 aa18.26■□□□□ 0.51
NEFM-204ENST00000518131 AQRO60306 1485 aaKnown RBP eCLIP18.24■□□□□ 0.51
NEFM-204ENST00000518131 ZNF608Q9ULD9 1512 aaPredicted RBP18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms