RNA–Protein interactions for RNA: ENST00000368209.9

HDGF-203, Transcript of heparin binding growth factor, humanhuman

TSL 2 BASIC

Gene HDGF, Length 2,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGF-203ENST00000368209 NISCHQ9Y2I1 1504 aa30.29■■■□□ 2.44
HDGF-203ENST00000368209 CCDC180Q9P1Z9 1646 aa26.36■■□□□ 1.81
HDGF-203ENST00000368209 ZCCHC6Q5VYS8 1495 aaKnown RBP25.48■■□□□ 1.67
HDGF-203ENST00000368209 DCAF1Q9Y4B6 1507 aa25.05■■□□□ 1.6
HDGF-203ENST00000368209 DCAF8L2P0C7V8 631 aa24.85■■□□□ 1.57
HDGF-203ENST00000368209 ABCC9O60706 1549 aa24.85■■□□□ 1.57
HDGF-203ENST00000368209 MYO15BQ96JP2 1530 aa24.72■■□□□ 1.55
HDGF-203ENST00000368209 SHROOM4Q9ULL8 1493 aa24.72■■□□□ 1.55
HDGF-203ENST00000368209 NACADO15069 1562 aa24.52■■□□□ 1.52
HDGF-203ENST00000368209 RB1CC1Q8TDY2 1594 aa24.27■■□□□ 1.48
HDGF-203ENST00000368209 SCRIBQ14160 1630 aa24.25■■□□□ 1.47
HDGF-203ENST00000368209 UNC13AQ9UPW8 1703 aa23.88■■□□□ 1.41
HDGF-203ENST00000368209 SUPT5HO00267 1087 aaKnown RBP23.77■■□□□ 1.4
HDGF-203ENST00000368209 BICRAQ9NZM4 1560 aa23.65■■□□□ 1.38
HDGF-203ENST00000368209 CECR2Q9BXF3 1484 aa23.56■■□□□ 1.36
HDGF-203ENST00000368209 RSF1Q96T23 1441 aaPredicted RBP23.54■■□□□ 1.36
HDGF-203ENST00000368209 PABPN1Q86U42 306 aaKnown RBP eCLIP23.44■■□□□ 1.34
HDGF-203ENST00000368209 MROH2BQ7Z745 1585 aa23.43■■□□□ 1.34
HDGF-203ENST00000368209 BAZ1AQ9NRL2 1556 aaPredicted RBP23.35■■□□□ 1.33
HDGF-203ENST00000368209 SMARCA4P51532 1647 aa23.27■■□□□ 1.32
HDGF-203ENST00000368209 WIZO95785 1651 aa23.23■■□□□ 1.31
HDGF-203ENST00000368209 PEG3Q9GZU2 1588 aa23.01■■□□□ 1.27
HDGF-203ENST00000368209 TOP2AP11388 1531 aaKnown RBP22.97■■□□□ 1.27
HDGF-203ENST00000368209 EIF4G1Q04637 1599 aaKnown RBP22.87■■□□□ 1.25
HDGF-203ENST00000368209 ATAD2BQ9ULI0 1458 aa22.87■■□□□ 1.25
HDGF-203ENST00000368209 CHIC1Q5VXU3 224 aa22.86■■□□□ 1.25
HDGF-203ENST00000368209 SMARCA2P51531 1590 aa22.81■■□□□ 1.24
HDGF-203ENST00000368209 CCDC88BA6NC98 1476 aa22.75■■□□□ 1.23
HDGF-203ENST00000368209 BAZ1BQ9UIG0 1483 aaKnown RBP22.7■■□□□ 1.22
HDGF-203ENST00000368209 NCAPD3P42695 1498 aa22.66■■□□□ 1.22
HDGF-203ENST00000368209 HMGXB3Q12766 1538 aa22.63■■□□□ 1.21
HDGF-203ENST00000368209 CC2D2AQ9P2K1 1620 aa22.51■■□□□ 1.19
HDGF-203ENST00000368209 TRIM41Q8WV44 630 aa22.33■■□□□ 1.16
HDGF-203ENST00000368209 ABCC8Q09428 1581 aa22.3■■□□□ 1.16
HDGF-203ENST00000368209 CFTRP13569 1480 aa22.18■■□□□ 1.14
HDGF-203ENST00000368209 WRNQ14191 1432 aaPredicted RBP eCLIP22.11■■□□□ 1.13
HDGF-203ENST00000368209 SYNJ1O43426 1573 aa22.07■■□□□ 1.12
HDGF-203ENST00000368209 PRDM2Q13029 1718 aa22.06■■□□□ 1.12
HDGF-203ENST00000368209 CADPSQ9ULU8 1353 aa22.05■■□□□ 1.12
HDGF-203ENST00000368209 DNAJC5BQ9UF47 199 aa22.01■■□□□ 1.11
HDGF-203ENST00000368209 LOC105371045A0A1W2PR82 267 aa21.99■■□□□ 1.11
HDGF-203ENST00000368209 TOP2BQ02880 1626 aa21.95■■□□□ 1.1
HDGF-203ENST00000368209 FAM9AQ8IZU1 332 aaPredicted RBP21.94■■□□□ 1.1
HDGF-203ENST00000368209 BIVM-ERCC5R4GMW8 1640 aa21.93■■□□□ 1.1
HDGF-203ENST00000368209 CUX1P39880 1505 aa21.9■■□□□ 1.1
HDGF-203ENST00000368209 SOGA1O94964 1423 aa21.9■■□□□ 1.1
HDGF-203ENST00000368209 NESP48681 1621 aa21.88■■□□□ 1.09
HDGF-203ENST00000368209 LAMC3Q9Y6N6 1575 aa21.84■■□□□ 1.09
HDGF-203ENST00000368209 RUSC2Q8N2Y8 1516 aa21.84■■□□□ 1.09
HDGF-203ENST00000368209 FANCD2Q9BXW9 1451 aa21.81■■□□□ 1.08
HDGF-203ENST00000368209 EEA1Q15075 1411 aa21.79■■□□□ 1.08
HDGF-203ENST00000368209 CSRNP3Q8WYN3 585 aa21.67■■□□□ 1.06
HDGF-203ENST00000368209 CEP164Q9UPV0 1460 aa21.65■■□□□ 1.06
HDGF-203ENST00000368209 DNMBPQ6XZF7 1577 aa21.64■■□□□ 1.05
HDGF-203ENST00000368209 PDS5BQ9NTI5 1447 aa21.64■■□□□ 1.05
HDGF-203ENST00000368209 EHMT2Q96KQ7 1210 aa21.61■■□□□ 1.05
HDGF-203ENST00000368209 FGD5Q6ZNL6 1462 aa21.61■■□□□ 1.05
HDGF-203ENST00000368209 KIF21AQ7Z4S6 1674 aa21.61■■□□□ 1.05
HDGF-203ENST00000368209 TOPBP1Q92547 1522 aa21.61■■□□□ 1.05
HDGF-203ENST00000368209 URB2Q14146 1524 aaKnown RBP21.58■■□□□ 1.05
HDGF-203ENST00000368209 KIF21BO75037 1637 aa21.56■■□□□ 1.04
HDGF-203ENST00000368209 POLA1P09884 1462 aaPredicted RBP21.52■■□□□ 1.03
HDGF-203ENST00000368209 GOLGA3Q08378 1498 aa21.51■■□□□ 1.03
HDGF-203ENST00000368209 KIF27Q86VH2 1401 aa21.51■■□□□ 1.03
HDGF-203ENST00000368209 TNIKQ9UKE5 1360 aa21.48■■□□□ 1.03
HDGF-203ENST00000368209 CUX2O14529 1486 aa21.46■■□□□ 1.03
HDGF-203ENST00000368209 PRXQ9BXM0 1461 aa21.46■■□□□ 1.03
HDGF-203ENST00000368209 RAD54L2Q9Y4B4 1467 aa21.45■■□□□ 1.02
HDGF-203ENST00000368209 RAPGEF2Q9Y4G8 1499 aa21.44■■□□□ 1.02
HDGF-203ENST00000368209 ABCA10Q8WWZ4 1543 aa21.43■■□□□ 1.02
HDGF-203ENST00000368209 ERICH3Q5RHP9 1530 aa21.4■■□□□ 1.02
HDGF-203ENST00000368209 WDR97A6NE52 1622 aa21.4■■□□□ 1.02
HDGF-203ENST00000368209 MRC2Q9UBG0 1479 aa21.39■■□□□ 1.01
HDGF-203ENST00000368209 CEP162Q5TB80 1403 aa21.37■■□□□ 1.01
HDGF-203ENST00000368209 IGF1RP08069 1367 aa21.37■■□□□ 1.01
HDGF-203ENST00000368209 UBTFP17480 764 aaKnown RBP21.34■■□□□ 1.01
HDGF-203ENST00000368209 TARBP1Q13395 1621 aaKnown RBP21.31■■□□□ 1
HDGF-203ENST00000368209 WDR62O43379 1518 aa21.31■■□□□ 1
HDGF-203ENST00000368209 ABCA5Q8WWZ7 1642 aa21.28■■□□□ 1
HDGF-203ENST00000368209 THOC2Q8NI27 1593 aaKnown RBP21.26■□□□□ 0.99
HDGF-203ENST00000368209 ERCC6Q03468 1493 aa21.23■□□□□ 0.99
HDGF-203ENST00000368209 CARMIL1Q5VZK9 1371 aa21.23■□□□□ 0.99
HDGF-203ENST00000368209 TDRD9Q8NDG6 1382 aaKnown RBP21.2■□□□□ 0.99
HDGF-203ENST00000368209 GAPVD1Q14C86 1478 aa21.18■□□□□ 0.98
HDGF-203ENST00000368209 CLIP1P30622 1438 aa21.17■□□□□ 0.98
HDGF-203ENST00000368209 CUL7Q14999 1698 aa21.16■□□□□ 0.98
HDGF-203ENST00000368209 IFT140Q96RY7 1462 aa21.13■□□□□ 0.97
HDGF-203ENST00000368209 PBRM1Q86U86 1689 aa21.07■□□□□ 0.96
HDGF-203ENST00000368209 ZNF608Q9ULD9 1512 aaPredicted RBP21.07■□□□□ 0.96
HDGF-203ENST00000368209 AQRO60306 1485 aaKnown RBP eCLIP21.07■□□□□ 0.963e-7■■■■■ 35.7
HDGF-203ENST00000368209 ARAP1Q96P48 1450 aa21.02■□□□□ 0.96
HDGF-203ENST00000368209 VPS8Q8N3P4 1428 aa21.01■□□□□ 0.95
HDGF-203ENST00000368209 ARHGAP35Q9NRY4 1499 aa20.99■□□□□ 0.95
HDGF-203ENST00000368209 PCGF6Q9BYE7 350 aa20.99■□□□□ 0.95
HDGF-203ENST00000368209 GRIN2BQ13224 1484 aa20.99■□□□□ 0.95
HDGF-203ENST00000368209 RANGAP1P46060 587 aaPredicted RBP20.98■□□□□ 0.95
HDGF-203ENST00000368209 EIF4G3O43432 1585 aaKnown RBP20.98■□□□□ 0.95
HDGF-203ENST00000368209 ADAMTS12P58397 1594 aa20.98■□□□□ 0.95
HDGF-203ENST00000368209 TRIM26Q12899 539 aaPredicted RBP20.96■□□□□ 0.95
HDGF-203ENST00000368209 CTTNBP2Q8WZ74 1663 aa20.95■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms