RNA–Protein interactions for RNA: ENST00000264346.11

HERC6-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 6, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERC6, Length 3,779 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6-201ENST00000264346 NISCHQ9Y2I1 1504 aa24.02■■□□□ 1.44
HERC6-201ENST00000264346 DCAF8L2P0C7V8 631 aa22.49■■□□□ 1.19
HERC6-201ENST00000264346 SHROOM4Q9ULL8 1493 aa22.09■■□□□ 1.13
HERC6-201ENST00000264346 SUPT5HO00267 1087 aaKnown RBP21.93■■□□□ 1.1
HERC6-201ENST00000264346 EHMT2Q96KQ7 1210 aa20.86■□□□□ 0.93
HERC6-201ENST00000264346 FAM9AQ8IZU1 332 aaPredicted RBP20.54■□□□□ 0.88
HERC6-201ENST00000264346 PCGF6Q9BYE7 350 aa20.42■□□□□ 0.86
HERC6-201ENST00000264346 CHIC1Q5VXU3 224 aa20.32■□□□□ 0.84
HERC6-201ENST00000264346 LOC105371045A0A1W2PR82 267 aa20.2■□□□□ 0.82
HERC6-201ENST00000264346 TRIM41Q8WV44 630 aa20.16■□□□□ 0.82
HERC6-201ENST00000264346 TTBK1Q5TCY1 1321 aaPredicted RBP20.09■□□□□ 0.81
HERC6-201ENST00000264346 ZCCHC6Q5VYS8 1495 aaKnown RBP20.07■□□□□ 0.8
HERC6-201ENST00000264346 ABCC9O60706 1549 aa20.01■□□□□ 0.79
HERC6-201ENST00000264346 PPARGC1BQ86YN6 1023 aaKnown RBP19.94■□□□□ 0.78
HERC6-201ENST00000264346 CCDC180Q9P1Z9 1646 aa19.8■□□□□ 0.76
HERC6-201ENST00000264346 RANGAP1P46060 587 aaPredicted RBP19.79■□□□□ 0.76
HERC6-201ENST00000264346 HRCP23327 699 aa19.72■□□□□ 0.75
HERC6-201ENST00000264346 PABPN1Q86U42 306 aaKnown RBP eCLIP19.64■□□□□ 0.73
HERC6-201ENST00000264346 SCRIBQ14160 1630 aa19.6■□□□□ 0.73
HERC6-201ENST00000264346 UBTFP17480 764 aaKnown RBP19.58■□□□□ 0.72
HERC6-201ENST00000264346 MYO15BQ96JP2 1530 aa19.58■□□□□ 0.72
HERC6-201ENST00000264346 TRIM26Q12899 539 aaPredicted RBP19.55■□□□□ 0.72
HERC6-201ENST00000264346 CCER1Q8TC90 406 aaPredicted RBP19.42■□□□□ 0.7
HERC6-201ENST00000264346 APLP2Q06481 763 aa19.41■□□□□ 0.7
HERC6-201ENST00000264346 RSF1Q96T23 1441 aaPredicted RBP19.23■□□□□ 0.67
HERC6-201ENST00000264346 ZEB1P37275 1124 aaPredicted RBP19.21■□□□□ 0.67
HERC6-201ENST00000264346 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.2■□□□□ 0.66
HERC6-201ENST00000264346 ATP1B4Q9UN42 357 aaPredicted RBP19.13■□□□□ 0.65
HERC6-201ENST00000264346 PELP1Q8IZL8 1130 aaKnown RBP19.11■□□□□ 0.65
HERC6-201ENST00000264346 HNRNPUL2Q1KMD3 747 aaKnown RBP19.08■□□□□ 0.64
HERC6-201ENST00000264346 CECR2Q9BXF3 1484 aa19.07■□□□□ 0.64
HERC6-201ENST00000264346 DCAF1Q9Y4B6 1507 aa19.06■□□□□ 0.64
HERC6-201ENST00000264346 ITGAEP38570 1179 aa18.95■□□□□ 0.62
HERC6-201ENST00000264346 SCAF1Q9H7N4 1312 aaKnown RBP18.92■□□□□ 0.62
HERC6-201ENST00000264346 YTHDC1Q96MU7 727 aaKnown RBP18.9■□□□□ 0.62
HERC6-201ENST00000264346 CSRNP3Q8WYN3 585 aa18.88■□□□□ 0.61
HERC6-201ENST00000264346 RB1CC1Q8TDY2 1594 aa18.88■□□□□ 0.61
HERC6-201ENST00000264346 NACADO15069 1562 aa18.83■□□□□ 0.6
HERC6-201ENST00000264346 MROH2BQ7Z745 1585 aa18.81■□□□□ 0.6
HERC6-201ENST00000264346 CENPBP07199 599 aaPredicted RBP18.67■□□□□ 0.58
HERC6-201ENST00000264346 DIEXFQ68CQ4 756 aaKnown RBP18.63■□□□□ 0.57
HERC6-201ENST00000264346 WIZO95785 1651 aa18.63■□□□□ 0.57
HERC6-201ENST00000264346 P3H3Q8IVL6 736 aa18.57■□□□□ 0.56
HERC6-201ENST00000264346 GTF3C3Q9Y5Q9 886 aa18.57■□□□□ 0.56
HERC6-201ENST00000264346 BAZ1AQ9NRL2 1556 aaPredicted RBP18.55■□□□□ 0.56
HERC6-201ENST00000264346 ABCC8Q09428 1581 aa18.54■□□□□ 0.56
HERC6-201ENST00000264346 SOGA1O94964 1423 aa18.52■□□□□ 0.56
HERC6-201ENST00000264346 NEUROD1Q13562 356 aa18.49■□□□□ 0.55
HERC6-201ENST00000264346 CCDC88BA6NC98 1476 aa18.47■□□□□ 0.55
HERC6-201ENST00000264346 FAM50AQ14320 339 aaKnown RBP18.46■□□□□ 0.55
HERC6-201ENST00000264346 CEP162Q5TB80 1403 aa18.46■□□□□ 0.55
HERC6-201ENST00000264346 WRNQ14191 1432 aaPredicted RBP eCLIP18.43■□□□□ 0.54
HERC6-201ENST00000264346 ACIN1Q9UKV3 1341 aaKnown RBP18.37■□□□□ 0.53
HERC6-201ENST00000264346 BAZ1BQ9UIG0 1483 aaKnown RBP18.36■□□□□ 0.53
HERC6-201ENST00000264346 ARID3CA6NKF2 412 aa18.34■□□□□ 0.53
HERC6-201ENST00000264346 CLIP1P30622 1438 aa18.33■□□□□ 0.52
HERC6-201ENST00000264346 ZNF316A6NFI3 1004 aaPredicted RBP18.31■□□□□ 0.52
HERC6-201ENST00000264346 MYT1Q01538 1121 aa18.3■□□□□ 0.52
HERC6-201ENST00000264346 RUSC2Q8N2Y8 1516 aa18.28■□□□□ 0.52
HERC6-201ENST00000264346 TNIKQ9UKE5 1360 aa18.26■□□□□ 0.51
HERC6-201ENST00000264346 GOLGA3Q08378 1498 aa18.26■□□□□ 0.51
HERC6-201ENST00000264346 CNGB1Q14028 1251 aaPredicted RBP18.23■□□□□ 0.51
HERC6-201ENST00000264346 TOP2AP11388 1531 aaKnown RBP18.21■□□□□ 0.51
HERC6-201ENST00000264346 SMARCA4P51532 1647 aa18.19■□□□□ 0.5
HERC6-201ENST00000264346 EEA1Q15075 1411 aa18.18■□□□□ 0.5
HERC6-201ENST00000264346 FBLN2P98095 1184 aa18.12■□□□□ 0.49
HERC6-201ENST00000264346 POLR3GLQ9BT43 218 aa18.11■□□□□ 0.49
HERC6-201ENST00000264346 CEP164Q9UPV0 1460 aa18.11■□□□□ 0.49
HERC6-201ENST00000264346 TRIM52Q96A61 297 aa18.08■□□□□ 0.48
HERC6-201ENST00000264346 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
HERC6-201ENST00000264346 MIER1Q8N108 512 aa18.05■□□□□ 0.48
HERC6-201ENST00000264346 ATAD2BQ9ULI0 1458 aa18.05■□□□□ 0.48
HERC6-201ENST00000264346 KANK4Q5T7N3 995 aaPredicted RBP18.02■□□□□ 0.48
HERC6-201ENST00000264346 HIRIP3Q9BW71 556 aaPredicted RBP18.01■□□□□ 0.47
HERC6-201ENST00000264346 KIF27Q86VH2 1401 aa17.99■□□□□ 0.47
HERC6-201ENST00000264346 RAPGEF2Q9Y4G8 1499 aa17.97■□□□□ 0.47
HERC6-201ENST00000264346 CHIC2Q9UKJ5 165 aa17.95■□□□□ 0.46
HERC6-201ENST00000264346 NEFLP07196 543 aa17.92■□□□□ 0.46
HERC6-201ENST00000264346 BCANQ96GW7 911 aa17.92■□□□□ 0.46
HERC6-201ENST00000264346 CUX2O14529 1486 aa17.91■□□□□ 0.46
HERC6-201ENST00000264346 VPS8Q8N3P4 1428 aa17.9■□□□□ 0.46
HERC6-201ENST00000264346 DDX10Q13206 875 aaKnown RBP17.89■□□□□ 0.45
HERC6-201ENST00000264346 ZNF326Q5BKZ1 582 aaKnown RBP17.88■□□□□ 0.45
HERC6-201ENST00000264346 ZNF777Q9ULD5 760 aaPredicted RBP17.86■□□□□ 0.45
HERC6-201ENST00000264346 CARMIL1Q5VZK9 1371 aa17.82■□□□□ 0.44
HERC6-201ENST00000264346 SIN3AQ96ST3 1273 aa17.82■□□□□ 0.44
HERC6-201ENST00000264346 MYT1LQ9UL68 1186 aa17.8■□□□□ 0.44
HERC6-201ENST00000264346 MTUS2Q5JR59 1369 aa17.8■□□□□ 0.44
HERC6-201ENST00000264346 RRP7BPQ9NSQ0 103 aa17.78■□□□□ 0.44
HERC6-201ENST00000264346 SYNJ1O43426 1573 aa17.75■□□□□ 0.43
HERC6-201ENST00000264346 ANP32CO43423 234 aa17.74■□□□□ 0.43
HERC6-201ENST00000264346 CCNB3Q8WWL7 1395 aa17.73■□□□□ 0.43
HERC6-201ENST00000264346 TDRD9Q8NDG6 1382 aaKnown RBP17.72■□□□□ 0.43
HERC6-201ENST00000264346 BICRAQ9NZM4 1560 aa17.72■□□□□ 0.43
HERC6-201ENST00000264346 TONSLQ96HA7 1378 aa17.71■□□□□ 0.43
HERC6-201ENST00000264346 CADPSQ9ULU8 1353 aa17.68■□□□□ 0.42
HERC6-201ENST00000264346 UNC13AQ9UPW8 1703 aa17.64■□□□□ 0.41
HERC6-201ENST00000264346 CHMP7Q8WUX9 453 aaPredicted RBP17.6■□□□□ 0.41
HERC6-201ENST00000264346 EIF4G1Q04637 1599 aaKnown RBP17.6■□□□□ 0.41
HERC6-201ENST00000264346 BCL11AQ9H165 835 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms