RNA–Protein interactions for RNA: ENST00000594092.5

VRK3-207, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK3, Length 1,831 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-207ENST00000594092 NISCHQ9Y2I1 1504 aa34.93■■■■□ 3.18
VRK3-207ENST00000594092 CCDC180Q9P1Z9 1646 aa30.55■■■□□ 2.48
VRK3-207ENST00000594092 ZCCHC6Q5VYS8 1495 aaKnown RBP29.3■■■□□ 2.28
VRK3-207ENST00000594092 ABCC9O60706 1549 aa29.08■■■□□ 2.25
VRK3-207ENST00000594092 DCAF1Q9Y4B6 1507 aa28.88■■■□□ 2.21
VRK3-207ENST00000594092 DCAF8L2P0C7V8 631 aa28.88■■■□□ 2.21
VRK3-207ENST00000594092 MYO15BQ96JP2 1530 aa28.63■■■□□ 2.17
VRK3-207ENST00000594092 NACADO15069 1562 aa28.51■■■□□ 2.15
VRK3-207ENST00000594092 SHROOM4Q9ULL8 1493 aa28.32■■■□□ 2.12
VRK3-207ENST00000594092 RB1CC1Q8TDY2 1594 aa28.31■■■□□ 2.12
VRK3-207ENST00000594092 SCRIBQ14160 1630 aa28.05■■■□□ 2.08
VRK3-207ENST00000594092 UNC13AQ9UPW8 1703 aa27.72■■■□□ 2.03
VRK3-207ENST00000594092 BICRAQ9NZM4 1560 aa27.47■■□□□ 1.99
VRK3-207ENST00000594092 PABPN1Q86U42 306 aaKnown RBP eCLIP27.38■■□□□ 1.97
VRK3-207ENST00000594092 CECR2Q9BXF3 1484 aa27.16■■□□□ 1.94
VRK3-207ENST00000594092 SUPT5HO00267 1087 aaKnown RBP27.13■■□□□ 1.93
VRK3-207ENST00000594092 RSF1Q96T23 1441 aaPredicted RBP27.01■■□□□ 1.91
VRK3-207ENST00000594092 MROH2BQ7Z745 1585 aa26.98■■□□□ 1.91
VRK3-207ENST00000594092 BAZ1AQ9NRL2 1556 aaPredicted RBP26.98■■□□□ 1.91
VRK3-207ENST00000594092 SMARCA4P51532 1647 aa26.89■■□□□ 1.89
VRK3-207ENST00000594092 WIZO95785 1651 aa26.73■■□□□ 1.87
VRK3-207ENST00000594092 EIF4G1Q04637 1599 aaKnown RBP26.65■■□□□ 1.86
VRK3-207ENST00000594092 PEG3Q9GZU2 1588 aa26.58■■□□□ 1.85
VRK3-207ENST00000594092 ATAD2BQ9ULI0 1458 aa26.51■■□□□ 1.83
VRK3-207ENST00000594092 SMARCA2P51531 1590 aa26.48■■□□□ 1.83
VRK3-207ENST00000594092 TOP2AP11388 1531 aaKnown RBP26.46■■□□□ 1.83
VRK3-207ENST00000594092 BAZ1BQ9UIG0 1483 aaKnown RBP26.34■■□□□ 1.81
VRK3-207ENST00000594092 NCAPD3P42695 1498 aa26.32■■□□□ 1.8
VRK3-207ENST00000594092 CC2D2AQ9P2K1 1620 aa26.31■■□□□ 1.8
VRK3-207ENST00000594092 HMGXB3Q12766 1538 aa26.27■■□□□ 1.8
VRK3-207ENST00000594092 CCDC88BA6NC98 1476 aa26.19■■□□□ 1.78
VRK3-207ENST00000594092 CHIC1Q5VXU3 224 aa25.88■■□□□ 1.73
VRK3-207ENST00000594092 DNAJC5BQ9UF47 199 aa25.86■■□□□ 1.73
VRK3-207ENST00000594092 CFTRP13569 1480 aa25.68■■□□□ 1.7
VRK3-207ENST00000594092 CADPSQ9ULU8 1353 aa25.63■■□□□ 1.69
VRK3-207ENST00000594092 ABCC8Q09428 1581 aa25.56■■□□□ 1.68
VRK3-207ENST00000594092 TRIM41Q8WV44 630 aa25.53■■□□□ 1.68
VRK3-207ENST00000594092 PRDM2Q13029 1718 aa25.51■■□□□ 1.67
VRK3-207ENST00000594092 NESP48681 1621 aa25.47■■□□□ 1.67
VRK3-207ENST00000594092 LAMC3Q9Y6N6 1575 aa25.45■■□□□ 1.66
VRK3-207ENST00000594092 WRNQ14191 1432 aaPredicted RBP eCLIP25.42■■□□□ 1.66
VRK3-207ENST00000594092 FANCD2Q9BXW9 1451 aa25.34■■□□□ 1.65
VRK3-207ENST00000594092 SYNJ1O43426 1573 aa25.33■■□□□ 1.65
VRK3-207ENST00000594092 PDS5BQ9NTI5 1447 aa25.26■■□□□ 1.63
VRK3-207ENST00000594092 TOP2BQ02880 1626 aa25.25■■□□□ 1.63
VRK3-207ENST00000594092 CUX1P39880 1505 aa25.24■■□□□ 1.63
VRK3-207ENST00000594092 BIVM-ERCC5R4GMW8 1640 aa25.22■■□□□ 1.63
VRK3-207ENST00000594092 CEP164Q9UPV0 1460 aa25.19■■□□□ 1.62
VRK3-207ENST00000594092 KIF21AQ7Z4S6 1674 aa25.15■■□□□ 1.62
VRK3-207ENST00000594092 DNMBPQ6XZF7 1577 aa25.08■■□□□ 1.6
VRK3-207ENST00000594092 TOPBP1Q92547 1522 aa25.05■■□□□ 1.6
VRK3-207ENST00000594092 FAM9AQ8IZU1 332 aaPredicted RBP25.05■■□□□ 1.6
VRK3-207ENST00000594092 SOGA1O94964 1423 aa25.04■■□□□ 1.6
VRK3-207ENST00000594092 URB2Q14146 1524 aaKnown RBP25.04■■□□□ 1.6
VRK3-207ENST00000594092 FGD5Q6ZNL6 1462 aa24.99■■□□□ 1.59
VRK3-207ENST00000594092 RUSC2Q8N2Y8 1516 aa24.96■■□□□ 1.59
VRK3-207ENST00000594092 MRC2Q9UBG0 1479 aa24.95■■□□□ 1.59
VRK3-207ENST00000594092 EEA1Q15075 1411 aa24.95■■□□□ 1.58
VRK3-207ENST00000594092 ERCC6Q03468 1493 aa24.95■■□□□ 1.58
VRK3-207ENST00000594092 POLA1P09884 1462 aaPredicted RBP24.91■■□□□ 1.58
VRK3-207ENST00000594092 LOC105371045A0A1W2PR82 267 aa24.87■■□□□ 1.57
VRK3-207ENST00000594092 WDR62O43379 1518 aa24.83■■□□□ 1.57
VRK3-207ENST00000594092 CSRNP3Q8WYN3 585 aa24.83■■□□□ 1.57
VRK3-207ENST00000594092 RAD54L2Q9Y4B4 1467 aa24.82■■□□□ 1.56
VRK3-207ENST00000594092 THOC2Q8NI27 1593 aaKnown RBP24.81■■□□□ 1.56
VRK3-207ENST00000594092 KIF27Q86VH2 1401 aa24.8■■□□□ 1.56
VRK3-207ENST00000594092 CUX2O14529 1486 aa24.78■■□□□ 1.56
VRK3-207ENST00000594092 ABCA10Q8WWZ4 1543 aa24.78■■□□□ 1.56
VRK3-207ENST00000594092 WDR97A6NE52 1622 aa24.71■■□□□ 1.55
VRK3-207ENST00000594092 EHMT2Q96KQ7 1210 aa24.7■■□□□ 1.54
VRK3-207ENST00000594092 TARBP1Q13395 1621 aaKnown RBP24.69■■□□□ 1.54
VRK3-207ENST00000594092 KIF21BO75037 1637 aa24.63■■□□□ 1.53
VRK3-207ENST00000594092 IGF1RP08069 1367 aa24.62■■□□□ 1.53
VRK3-207ENST00000594092 IFT140Q96RY7 1462 aa24.62■■□□□ 1.53
VRK3-207ENST00000594092 TDRD9Q8NDG6 1382 aaKnown RBP24.6■■□□□ 1.53
VRK3-207ENST00000594092 PRXQ9BXM0 1461 aa24.59■■□□□ 1.53
VRK3-207ENST00000594092 GOLGA3Q08378 1498 aa24.58■■□□□ 1.53
VRK3-207ENST00000594092 ABCA5Q8WWZ7 1642 aa24.58■■□□□ 1.53
VRK3-207ENST00000594092 GAPVD1Q14C86 1478 aa24.54■■□□□ 1.52
VRK3-207ENST00000594092 RAPGEF2Q9Y4G8 1499 aa24.54■■□□□ 1.52
VRK3-207ENST00000594092 ERICH3Q5RHP9 1530 aa24.51■■□□□ 1.51
VRK3-207ENST00000594092 ZNF608Q9ULD9 1512 aaPredicted RBP24.49■■□□□ 1.51
VRK3-207ENST00000594092 AQRO60306 1485 aaKnown RBP eCLIP24.48■■□□□ 1.513e-7■■■■■ 63.7
VRK3-207ENST00000594092 CARMIL1Q5VZK9 1371 aa24.48■■□□□ 1.51
VRK3-207ENST00000594092 UBTFP17480 764 aaKnown RBP24.48■■□□□ 1.51
VRK3-207ENST00000594092 TNIKQ9UKE5 1360 aa24.47■■□□□ 1.51
VRK3-207ENST00000594092 CUL7Q14999 1698 aa24.43■■□□□ 1.5
VRK3-207ENST00000594092 PBRM1Q86U86 1689 aa24.41■■□□□ 1.5
VRK3-207ENST00000594092 EIF4G3O43432 1585 aaKnown RBP24.4■■□□□ 1.5
VRK3-207ENST00000594092 GRIN2BQ13224 1484 aa24.39■■□□□ 1.49
VRK3-207ENST00000594092 CEP162Q5TB80 1403 aa24.32■■□□□ 1.48
VRK3-207ENST00000594092 ADAMTS12P58397 1594 aa24.28■■□□□ 1.48
VRK3-207ENST00000594092 FHAD1B1AJZ9 1412 aa24.28■■□□□ 1.48
VRK3-207ENST00000594092 SNAPC4Q5SXM2 1469 aa24.25■■□□□ 1.47
VRK3-207ENST00000594092 MAGI1Q96QZ7 1491 aaPredicted RBP24.2■■□□□ 1.47
VRK3-207ENST00000594092 CLIP1P30622 1438 aa24.19■■□□□ 1.46
VRK3-207ENST00000594092 RANGAP1P46060 587 aaPredicted RBP24.14■■□□□ 1.45
VRK3-207ENST00000594092 CTTNBP2Q8WZ74 1663 aa24.12■■□□□ 1.45
VRK3-207ENST00000594092 SYNJ2O15056 1496 aa24.11■■□□□ 1.45
VRK3-207ENST00000594092 GRIN2AQ12879 1464 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 196.5 ms