Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 PCDHA6-201ENST00000378126 3267 ntBASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 TRAK1-202ENST00000341421 4620 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 AL136295.4-201ENST00000561419 4351 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SETBP1-201ENST00000282030 9899 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 AP000523.1-201ENST00000398242 1049 ntBASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 CDK2AP2P3-201ENST00000422476 372 ntBASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 KRT18P5-201ENST00000436075 1291 ntBASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 STARD13-205ENST00000439831 945 ntTSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 AC116562.4-202ENST00000641738 218 ntBASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SRGAP2B-204ENST00000612199 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 TBC1D14-201ENST00000409757 4925 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 RAB3GAP2-202ENST00000358951 7257 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 ZNF549-201ENST00000240719 3969 ntAPPRIS P3 TSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 NUTM2B-202ENST00000372321 3970 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 TGM7-201ENST00000452443 2313 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SLC24A4-205ENST00000532405 9950 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 ACSF3-201ENST00000317447 3664 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 RBFOX1-224ENST00000641259 3651 ntBASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SYNJ1-201ENST00000357345 7059 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SHROOM2P1-201ENST00000434773 2384 ntBASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 NSD2-212ENST00000503128 8568 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SLC5A9-203ENST00000438567 3195 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 BCL2L11-218ENST00000615946 5026 ntTSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 BCL2L11-220ENST00000620862 5044 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 SLC8B1-213ENST00000552014 3289 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHKB-CPT1BH3BT56 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 FOSB-210ENST00000591858 3658 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 AL353593.2-201ENST00000602529 1483 ntBASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 ZNF275-202ENST00000370251 6320 ntTSL 2 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 AL139011.2-201ENST00000556710 2635 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 ZNF106-203ENST00000565380 5677 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 ADAMTSL3-205ENST00000567476 6873 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 LIMK2-202ENST00000333611 3462 ntAPPRIS ALT1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 L1CAM-201ENST00000361699 3888 ntAPPRIS ALT1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 PRKAR1A-217ENST00000589228 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 ERBB2-204ENST00000541774 4341 ntTSL 5 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 ADGRE2-201ENST00000315576 6767 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 FAM156B-203ENST00000593751 2942 ntAPPRIS P2 TSL 2 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 FAM156A-201ENST00000596733 2942 ntAPPRIS P2 TSL 2 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 CYTH1-210ENST00000589297 3756 ntTSL 5 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 SLC44A4-203ENST00000375562 2505 ntTSL 2 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 RBM7-203ENST00000540163 4243 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 AL645939.2-201ENST00000427340 991 ntBASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 AC009947.2-201ENST00000444014 672 ntBASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 AC006970.2-201ENST00000450065 779 ntBASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 AC133681.1-201ENST00000465482 601 ntBASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC8.19□□□□□ -1.1
CHKB-CPT1BH3BT56 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC8.19□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms