RNA–Protein interactions for RNA: ENST00000333611.8

LIMK2-202, Transcript of LIM domain kinase 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMK2, Length 3,462 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2-202ENST00000333611 NISCHQ9Y2I1 1504 aa22.4■■□□□ 1.18
LIMK2-202ENST00000333611 SHROOM4Q9ULL8 1493 aa20.3■□□□□ 0.84
LIMK2-202ENST00000333611 SUPT5HO00267 1087 aaKnown RBP20.12■□□□□ 0.81
LIMK2-202ENST00000333611 PELP1Q8IZL8 1130 aaKnown RBP19.82■□□□□ 0.76
LIMK2-202ENST00000333611 PPARGC1BQ86YN6 1023 aaKnown RBP19.82■□□□□ 0.76
LIMK2-202ENST00000333611 DCAF8L2P0C7V8 631 aa19.72■□□□□ 0.75
LIMK2-202ENST00000333611 HRCP23327 699 aa19.71■□□□□ 0.75
LIMK2-202ENST00000333611 PCGF6Q9BYE7 350 aa19.6■□□□□ 0.73
LIMK2-202ENST00000333611 CHIC1Q5VXU3 224 aa19.25■□□□□ 0.67
LIMK2-202ENST00000333611 MYO15BQ96JP2 1530 aa19.15■□□□□ 0.66
LIMK2-202ENST00000333611 MYT1Q01538 1121 aa19.15■□□□□ 0.66
LIMK2-202ENST00000333611 SCAF1Q9H7N4 1312 aaKnown RBP19.13■□□□□ 0.65
LIMK2-202ENST00000333611 LOC105371045A0A1W2PR82 267 aa19.04■□□□□ 0.64
LIMK2-202ENST00000333611 ZCCHC6Q5VYS8 1495 aaKnown RBP18.92■□□□□ 0.62
LIMK2-202ENST00000333611 EHMT2Q96KQ7 1210 aa18.9■□□□□ 0.62
LIMK2-202ENST00000333611 FAM9AQ8IZU1 332 aaPredicted RBP18.73■□□□□ 0.59
LIMK2-202ENST00000333611 GTF3C3Q9Y5Q9 886 aa18.62■□□□□ 0.57
LIMK2-202ENST00000333611 TRIM26Q12899 539 aaPredicted RBP18.58■□□□□ 0.56
LIMK2-202ENST00000333611 NEUROD1Q13562 356 aa18.5■□□□□ 0.55
LIMK2-202ENST00000333611 CCDC180Q9P1Z9 1646 aa18.49■□□□□ 0.55
LIMK2-202ENST00000333611 TRIM41Q8WV44 630 aa18.47■□□□□ 0.55
LIMK2-202ENST00000333611 ACIN1Q9UKV3 1341 aaKnown RBP18.45■□□□□ 0.54
LIMK2-202ENST00000333611 DCAF1Q9Y4B6 1507 aa18.43■□□□□ 0.54
LIMK2-202ENST00000333611 YTHDC1Q96MU7 727 aaKnown RBP18.42■□□□□ 0.54
LIMK2-202ENST00000333611 CENPBP07199 599 aaPredicted RBP18.39■□□□□ 0.53
LIMK2-202ENST00000333611 TTBK1Q5TCY1 1321 aaPredicted RBP18.32■□□□□ 0.52
LIMK2-202ENST00000333611 ZEB1P37275 1124 aaPredicted RBP18.27■□□□□ 0.52
LIMK2-202ENST00000333611 BCL11AQ9H165 835 aa18.25■□□□□ 0.51
LIMK2-202ENST00000333611 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.11■□□□□ 0.49
LIMK2-202ENST00000333611 CCER1Q8TC90 406 aaPredicted RBP18.08■□□□□ 0.49
LIMK2-202ENST00000333611 SCRIBQ14160 1630 aa18.06■□□□□ 0.48
LIMK2-202ENST00000333611 RSF1Q96T23 1441 aaPredicted RBP18.02■□□□□ 0.48
LIMK2-202ENST00000333611 DIEXFQ68CQ4 756 aaKnown RBP18.02■□□□□ 0.48
LIMK2-202ENST00000333611 RB1CC1Q8TDY2 1594 aa17.91■□□□□ 0.46
LIMK2-202ENST00000333611 ABCC9O60706 1549 aa17.89■□□□□ 0.45
LIMK2-202ENST00000333611 PRKCSHP14314 528 aaPredicted RBP17.86■□□□□ 0.45
LIMK2-202ENST00000333611 CECR2Q9BXF3 1484 aa17.75■□□□□ 0.43
LIMK2-202ENST00000333611 CSRNP3Q8WYN3 585 aa17.73■□□□□ 0.43
LIMK2-202ENST00000333611 ANP32EQ9BTT0 268 aa17.73■□□□□ 0.43
LIMK2-202ENST00000333611 UBTFP17480 764 aaKnown RBP17.71■□□□□ 0.43
LIMK2-202ENST00000333611 RANGAP1P46060 587 aaPredicted RBP17.7■□□□□ 0.42
LIMK2-202ENST00000333611 BCANQ96GW7 911 aa17.6■□□□□ 0.41
LIMK2-202ENST00000333611 MROH2BQ7Z745 1585 aa17.6■□□□□ 0.41
LIMK2-202ENST00000333611 HNRNPUL2Q1KMD3 747 aaKnown RBP17.59■□□□□ 0.41
LIMK2-202ENST00000333611 WIZO95785 1651 aa17.51■□□□□ 0.39
LIMK2-202ENST00000333611 MIER1Q8N108 512 aa17.47■□□□□ 0.39
LIMK2-202ENST00000333611 ERICH6Q7L0X2 663 aa17.44■□□□□ 0.38
LIMK2-202ENST00000333611 ABCC8Q09428 1581 aa17.43■□□□□ 0.38
LIMK2-202ENST00000333611 ZNF316A6NFI3 1004 aaPredicted RBP17.42■□□□□ 0.38
LIMK2-202ENST00000333611 CEP162Q5TB80 1403 aa17.4■□□□□ 0.38
LIMK2-202ENST00000333611 CCDC88BA6NC98 1476 aa17.39■□□□□ 0.37
LIMK2-202ENST00000333611 SOGA1O94964 1423 aa17.38■□□□□ 0.37
LIMK2-202ENST00000333611 APLP2Q06481 763 aa17.38■□□□□ 0.37
LIMK2-202ENST00000333611 TSHZ2Q9NRE2 1034 aa17.38■□□□□ 0.37
LIMK2-202ENST00000333611 PABPN1Q86U42 306 aaKnown RBP eCLIP17.34■□□□□ 0.37
LIMK2-202ENST00000333611 SUPT16HQ9Y5B9 1047 aaKnown RBP17.32■□□□□ 0.36
LIMK2-202ENST00000333611 RUSC2Q8N2Y8 1516 aa17.27■□□□□ 0.36
LIMK2-202ENST00000333611 NACADO15069 1562 aa17.23■□□□□ 0.35
LIMK2-202ENST00000333611 ANO8Q9HCE9 1232 aaPredicted RBP17.21■□□□□ 0.35
LIMK2-202ENST00000333611 TNIKQ9UKE5 1360 aa17.19■□□□□ 0.34
LIMK2-202ENST00000333611 CCDC136Q96JN2 1154 aa17.18■□□□□ 0.34
LIMK2-202ENST00000333611 ITGAEP38570 1179 aa17.17■□□□□ 0.34
LIMK2-202ENST00000333611 BAZ1AQ9NRL2 1556 aaPredicted RBP17.17■□□□□ 0.34
LIMK2-202ENST00000333611 WRNQ14191 1432 aaPredicted RBP eCLIP17.12■□□□□ 0.33
LIMK2-202ENST00000333611 FKBP8Q14318 412 aa17.09■□□□□ 0.33
LIMK2-202ENST00000333611 GOLGA3Q08378 1498 aa17.07■□□□□ 0.32
LIMK2-202ENST00000333611 CLIP1P30622 1438 aa17.06■□□□□ 0.32
LIMK2-202ENST00000333611 RTN4Q9NQC3 1192 aaKnown RBP17.05■□□□□ 0.32
LIMK2-202ENST00000333611 NEFLP07196 543 aa17.04■□□□□ 0.32
LIMK2-202ENST00000333611 TOP2AP11388 1531 aaKnown RBP17.04■□□□□ 0.32
LIMK2-202ENST00000333611 RBM19Q9Y4C8 960 aaKnown RBP17.02■□□□□ 0.31
LIMK2-202ENST00000333611 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.01■□□□□ 0.31
LIMK2-202ENST00000333611 SMARCA2P51531 1590 aa17.01■□□□□ 0.31
LIMK2-202ENST00000333611 NBR1Q14596 966 aa16.99■□□□□ 0.31
LIMK2-202ENST00000333611 EIF4G1Q04637 1599 aaKnown RBP16.98■□□□□ 0.31
LIMK2-202ENST00000333611 EEA1Q15075 1411 aa16.97■□□□□ 0.31
LIMK2-202ENST00000333611 SMARCA4P51532 1647 aa16.96■□□□□ 0.3
LIMK2-202ENST00000333611 DEKP35659 375 aaKnown RBP16.93■□□□□ 0.3
LIMK2-202ENST00000333611 SALL2Q9Y467 1007 aaPredicted RBP16.93■□□□□ 0.3
LIMK2-202ENST00000333611 EIF5BO60841 1220 aaKnown RBP16.92■□□□□ 0.3
LIMK2-202ENST00000333611 ATP1B4Q9UN42 357 aaPredicted RBP16.9■□□□□ 0.3
LIMK2-202ENST00000333611 CEP164Q9UPV0 1460 aa16.9■□□□□ 0.3
LIMK2-202ENST00000333611 KANK4Q5T7N3 995 aaPredicted RBP16.87■□□□□ 0.29
LIMK2-202ENST00000333611 RAPGEF2Q9Y4G8 1499 aa16.87■□□□□ 0.29
LIMK2-202ENST00000333611 VPS8Q8N3P4 1428 aa16.86■□□□□ 0.29
LIMK2-202ENST00000333611 KCNH8Q96L42 1107 aa16.81■□□□□ 0.28
LIMK2-202ENST00000333611 IRX6P78412 446 aaPredicted RBP16.79■□□□□ 0.28
LIMK2-202ENST00000333611 HIRIP3Q9BW71 556 aaPredicted RBP16.79■□□□□ 0.28
LIMK2-202ENST00000333611 MSH5O43196 834 aa16.79■□□□□ 0.28
LIMK2-202ENST00000333611 SYNJ1O43426 1573 aa16.78■□□□□ 0.28
LIMK2-202ENST00000333611 CLSPNQ9HAW4 1339 aa16.77■□□□□ 0.27
LIMK2-202ENST00000333611 DHX57Q6P158 1386 aaKnown RBP16.75■□□□□ 0.27
LIMK2-202ENST00000333611 FAM50AQ14320 339 aaKnown RBP16.74■□□□□ 0.27
LIMK2-202ENST00000333611 TRIM52Q96A61 297 aa16.74■□□□□ 0.27
LIMK2-202ENST00000333611 DDX10Q13206 875 aaKnown RBP16.73■□□□□ 0.27
LIMK2-202ENST00000333611 P3H3Q8IVL6 736 aa16.72■□□□□ 0.27
LIMK2-202ENST00000333611 RTL5Q5HYW3 569 aaPredicted RBP16.7■□□□□ 0.26
LIMK2-202ENST00000333611 CDK11AQ9UQ88 783 aaPredicted RBP16.69■□□□□ 0.26
LIMK2-202ENST00000333611 KIF21BO75037 1637 aa16.68■□□□□ 0.26
LIMK2-202ENST00000333611 BAZ1BQ9UIG0 1483 aaKnown RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms