RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 NISCHQ9Y2I1 1504 aa36.89■■■■□ 3.5
SHOX2-202ENST00000425436 CCDC180Q9P1Z9 1646 aa32.58■■■□□ 2.81
SHOX2-202ENST00000425436 ABCC9O60706 1549 aa31.71■■■□□ 2.67
SHOX2-202ENST00000425436 DCAF8L2P0C7V8 631 aa30.89■■■□□ 2.54
SHOX2-202ENST00000425436 ZCCHC6Q5VYS8 1495 aaKnown RBP30.77■■■□□ 2.52
SHOX2-202ENST00000425436 NACADO15069 1562 aa30.58■■■□□ 2.49
SHOX2-202ENST00000425436 RB1CC1Q8TDY2 1594 aa30.55■■■□□ 2.48
SHOX2-202ENST00000425436 DCAF1Q9Y4B6 1507 aa30.45■■■□□ 2.46
SHOX2-202ENST00000425436 MYO15BQ96JP2 1530 aa30.43■■■□□ 2.46
SHOX2-202ENST00000425436 UNC13AQ9UPW8 1703 aa29.93■■■□□ 2.38
SHOX2-202ENST00000425436 SCRIBQ14160 1630 aa29.88■■■□□ 2.37
SHOX2-202ENST00000425436 PABPN1Q86U42 306 aaKnown RBP eCLIP29.76■■■□□ 2.36
SHOX2-202ENST00000425436 BICRAQ9NZM4 1560 aa29.66■■■□□ 2.34
SHOX2-202ENST00000425436 SHROOM4Q9ULL8 1493 aa29.51■■■□□ 2.31
SHOX2-202ENST00000425436 DNAJC5BQ9UF47 199 aa28.89■■■□□ 2.21
SHOX2-202ENST00000425436 EIF4G1Q04637 1599 aaKnown RBP28.83■■■□□ 2.21
SHOX2-202ENST00000425436 CECR2Q9BXF3 1484 aa28.78■■■□□ 2.2
SHOX2-202ENST00000425436 CC2D2AQ9P2K1 1620 aa28.67■■■□□ 2.18
SHOX2-202ENST00000425436 SMARCA4P51532 1647 aa28.56■■■□□ 2.16
SHOX2-202ENST00000425436 BAZ1AQ9NRL2 1556 aaPredicted RBP28.54■■■□□ 2.16
SHOX2-202ENST00000425436 MROH2BQ7Z745 1585 aa28.48■■■□□ 2.15
SHOX2-202ENST00000425436 ATAD2BQ9ULI0 1458 aa28.32■■■□□ 2.12
SHOX2-202ENST00000425436 RSF1Q96T23 1441 aaPredicted RBP28.27■■■□□ 2.12
SHOX2-202ENST00000425436 SMARCA2P51531 1590 aa28.26■■■□□ 2.12
SHOX2-202ENST00000425436 NCAPD3P42695 1498 aa28.24■■■□□ 2.11
SHOX2-202ENST00000425436 WIZO95785 1651 aa28.22■■■□□ 2.11
SHOX2-202ENST00000425436 PEG3Q9GZU2 1588 aa28.21■■■□□ 2.11
SHOX2-202ENST00000425436 AEBP2Q6ZN18 517 aaPredicted RBP28.12■■■□□ 2.09
SHOX2-202ENST00000425436 BAZ1BQ9UIG0 1483 aaKnown RBP28.11■■■□□ 2.09
SHOX2-202ENST00000425436 HMGXB3Q12766 1538 aa28.08■■■□□ 2.09
SHOX2-202ENST00000425436 SUPT5HO00267 1087 aaKnown RBP27.94■■■□□ 2.06
SHOX2-202ENST00000425436 TOP2AP11388 1531 aaKnown RBP27.85■■■□□ 2.05
SHOX2-202ENST00000425436 CCDC88BA6NC98 1476 aa27.59■■■□□ 2.01
SHOX2-202ENST00000425436 NESP48681 1621 aa27.55■■■□□ 2
SHOX2-202ENST00000425436 CADPSQ9ULU8 1353 aa27.46■■□□□ 1.99
SHOX2-202ENST00000425436 LAMC3Q9Y6N6 1575 aa27.42■■□□□ 1.98
SHOX2-202ENST00000425436 CFTRP13569 1480 aa27.35■■□□□ 1.97
SHOX2-202ENST00000425436 ERCC6Q03468 1493 aa27.27■■□□□ 1.96
SHOX2-202ENST00000425436 PDS5BQ9NTI5 1447 aa27.25■■□□□ 1.95
SHOX2-202ENST00000425436 KIF21AQ7Z4S6 1674 aa27.2■■□□□ 1.94
SHOX2-202ENST00000425436 FANCD2Q9BXW9 1451 aa27.15■■□□□ 1.94
SHOX2-202ENST00000425436 PRDM2Q13029 1718 aa27.15■■□□□ 1.94
SHOX2-202ENST00000425436 CEP164Q9UPV0 1460 aa27.07■■□□□ 1.92
SHOX2-202ENST00000425436 THOC2Q8NI27 1593 aaKnown RBP26.97■■□□□ 1.91
SHOX2-202ENST00000425436 MRC2Q9UBG0 1479 aa26.95■■□□□ 1.9
SHOX2-202ENST00000425436 URB2Q14146 1524 aaKnown RBP26.87■■□□□ 1.89
SHOX2-202ENST00000425436 WDR62O43379 1518 aa26.83■■□□□ 1.89
SHOX2-202ENST00000425436 CUX2O14529 1486 aa26.78■■□□□ 1.88
SHOX2-202ENST00000425436 TOPBP1Q92547 1522 aa26.75■■□□□ 1.87
SHOX2-202ENST00000425436 DNMBPQ6XZF7 1577 aa26.72■■□□□ 1.87
SHOX2-202ENST00000425436 ABCC8Q09428 1581 aa26.71■■□□□ 1.87
SHOX2-202ENST00000425436 CUX1P39880 1505 aa26.69■■□□□ 1.86
SHOX2-202ENST00000425436 WRNQ14191 1432 aaPredicted RBP eCLIP26.63■■□□□ 1.85
SHOX2-202ENST00000425436 SYNJ1O43426 1573 aa26.57■■□□□ 1.84
SHOX2-202ENST00000425436 POLA1P09884 1462 aaPredicted RBP26.54■■□□□ 1.84
SHOX2-202ENST00000425436 FGD5Q6ZNL6 1462 aa26.54■■□□□ 1.84
SHOX2-202ENST00000425436 TOP2BQ02880 1626 aa26.51■■□□□ 1.83
SHOX2-202ENST00000425436 BIVM-ERCC5R4GMW8 1640 aa26.5■■□□□ 1.83
SHOX2-202ENST00000425436 RAD54L2Q9Y4B4 1467 aa26.49■■□□□ 1.83
SHOX2-202ENST00000425436 SOGA1O94964 1423 aa26.47■■□□□ 1.83
SHOX2-202ENST00000425436 IFT140Q96RY7 1462 aa26.47■■□□□ 1.83
SHOX2-202ENST00000425436 TARBP1Q13395 1621 aaKnown RBP26.43■■□□□ 1.82
SHOX2-202ENST00000425436 ZNF608Q9ULD9 1512 aaPredicted RBP26.4■■□□□ 1.82
SHOX2-202ENST00000425436 CHIC1Q5VXU3 224 aa26.34■■□□□ 1.81
SHOX2-202ENST00000425436 TDRD9Q8NDG6 1382 aaKnown RBP26.33■■□□□ 1.81
SHOX2-202ENST00000425436 TRIM41Q8WV44 630 aa26.32■■□□□ 1.8
SHOX2-202ENST00000425436 AQRO60306 1485 aaKnown RBP eCLIP26.31■■□□□ 1.85e-13■□□□□ 10.6
SHOX2-202ENST00000425436 WDR97A6NE52 1622 aa26.27■■□□□ 1.8
SHOX2-202ENST00000425436 ABCA10Q8WWZ4 1543 aa26.26■■□□□ 1.79
SHOX2-202ENST00000425436 EIF4G3O43432 1585 aaKnown RBP26.25■■□□□ 1.79
SHOX2-202ENST00000425436 GAPVD1Q14C86 1478 aa26.15■■□□□ 1.78
SHOX2-202ENST00000425436 ABCA5Q8WWZ7 1642 aa26.13■■□□□ 1.77
SHOX2-202ENST00000425436 GRIN2BQ13224 1484 aa26.08■■□□□ 1.76
SHOX2-202ENST00000425436 PBRM1Q86U86 1689 aa26.07■■□□□ 1.76
SHOX2-202ENST00000425436 KIF27Q86VH2 1401 aa26.04■■□□□ 1.76
SHOX2-202ENST00000425436 SNAPC4Q5SXM2 1469 aa26.02■■□□□ 1.76
SHOX2-202ENST00000425436 RUSC2Q8N2Y8 1516 aa26.01■■□□□ 1.75
SHOX2-202ENST00000425436 FBLN2P98095 1184 aa25.99■■□□□ 1.75
SHOX2-202ENST00000425436 MAGI1Q96QZ7 1491 aaPredicted RBP25.95■■□□□ 1.74
SHOX2-202ENST00000425436 ERICH3Q5RHP9 1530 aa25.94■■□□□ 1.74
SHOX2-202ENST00000425436 IGF1RP08069 1367 aa25.93■■□□□ 1.74
SHOX2-202ENST00000425436 CHMP7Q8WUX9 453 aaPredicted RBP25.92■■□□□ 1.74
SHOX2-202ENST00000425436 CHD1O14646 1710 aa25.9■■□□□ 1.74
SHOX2-202ENST00000425436 SYNJ2O15056 1496 aa25.87■■□□□ 1.73
SHOX2-202ENST00000425436 ADAMTS12P58397 1594 aa25.85■■□□□ 1.73
SHOX2-202ENST00000425436 OSCARQ8IYS5 282 aa25.85■■□□□ 1.73
SHOX2-202ENST00000425436 FAM9AQ8IZU1 332 aaPredicted RBP25.85■■□□□ 1.73
SHOX2-202ENST00000425436 FHAD1B1AJZ9 1412 aa25.84■■□□□ 1.73
SHOX2-202ENST00000425436 CARMIL1Q5VZK9 1371 aa25.78■■□□□ 1.72
SHOX2-202ENST00000425436 CUL7Q14999 1698 aa25.77■■□□□ 1.72
SHOX2-202ENST00000425436 GRIN2AQ12879 1464 aa25.75■■□□□ 1.71
SHOX2-202ENST00000425436 CSRNP3Q8WYN3 585 aa25.74■■□□□ 1.71
SHOX2-202ENST00000425436 EEA1Q15075 1411 aa25.7■■□□□ 1.71
SHOX2-202ENST00000425436 DNAJC5Q9H3Z4 198 aa25.68■■□□□ 1.7
SHOX2-202ENST00000425436 RAPGEF2Q9Y4G8 1499 aa25.63■■□□□ 1.69
SHOX2-202ENST00000425436 CEP170Q5SW79 1584 aa25.63■■□□□ 1.69
SHOX2-202ENST00000425436 PRXQ9BXM0 1461 aa25.61■■□□□ 1.69
SHOX2-202ENST00000425436 NUP160Q12769 1436 aa25.6■■□□□ 1.69
SHOX2-202ENST00000425436 CLASP1Q7Z460 1538 aa25.56■■□□□ 1.68
SHOX2-202ENST00000425436 EHMT2Q96KQ7 1210 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms