RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 NISCHQ9Y2I1 1504 aa30.21■■■□□ 2.43
RTN3-210ENST00000540798 CCDC180Q9P1Z9 1646 aa26.14■■□□□ 1.77
RTN3-210ENST00000540798 ZCCHC6Q5VYS8 1495 aaKnown RBP25.51■■□□□ 1.67
RTN3-210ENST00000540798 DCAF1Q9Y4B6 1507 aa25.01■■□□□ 1.59
RTN3-210ENST00000540798 SHROOM4Q9ULL8 1493 aa24.91■■□□□ 1.58
RTN3-210ENST00000540798 DCAF8L2P0C7V8 631 aa24.57■■□□□ 1.52
RTN3-210ENST00000540798 MYO15BQ96JP2 1530 aa24.51■■□□□ 1.51
RTN3-210ENST00000540798 SUPT5HO00267 1087 aaKnown RBP24.18■■□□□ 1.46
RTN3-210ENST00000540798 NACADO15069 1562 aa24.17■■□□□ 1.46
RTN3-210ENST00000540798 ABCC9O60706 1549 aa24.14■■□□□ 1.45
RTN3-210ENST00000540798 SCRIBQ14160 1630 aa24.06■■□□□ 1.44
RTN3-210ENST00000540798 RB1CC1Q8TDY2 1594 aa23.82■■□□□ 1.4
RTN3-210ENST00000540798 RSF1Q96T23 1441 aaPredicted RBP23.63■■□□□ 1.37
RTN3-210ENST00000540798 CHIC1Q5VXU3 224 aa23.5■■□□□ 1.35
RTN3-210ENST00000540798 UNC13AQ9UPW8 1703 aa23.5■■□□□ 1.35
RTN3-210ENST00000540798 CECR2Q9BXF3 1484 aa23.43■■□□□ 1.34
RTN3-210ENST00000540798 MROH2BQ7Z745 1585 aa23.37■■□□□ 1.33
RTN3-210ENST00000540798 BAZ1AQ9NRL2 1556 aaPredicted RBP23.26■■□□□ 1.31
RTN3-210ENST00000540798 WIZO95785 1651 aa23.23■■□□□ 1.31
RTN3-210ENST00000540798 BICRAQ9NZM4 1560 aa23.18■■□□□ 1.3
RTN3-210ENST00000540798 SMARCA4P51532 1647 aa23.13■■□□□ 1.29
RTN3-210ENST00000540798 TOP2AP11388 1531 aaKnown RBP22.98■■□□□ 1.27
RTN3-210ENST00000540798 EIF4G1Q04637 1599 aaKnown RBP22.91■■□□□ 1.26
RTN3-210ENST00000540798 PEG3Q9GZU2 1588 aa22.86■■□□□ 1.25
RTN3-210ENST00000540798 PABPN1Q86U42 306 aaKnown RBP eCLIP22.83■■□□□ 1.25
RTN3-210ENST00000540798 SMARCA2P51531 1590 aa22.8■■□□□ 1.24
RTN3-210ENST00000540798 CCDC88BA6NC98 1476 aa22.73■■□□□ 1.23
RTN3-210ENST00000540798 TRIM41Q8WV44 630 aa22.7■■□□□ 1.22
RTN3-210ENST00000540798 LOC105371045A0A1W2PR82 267 aa22.6■■□□□ 1.21
RTN3-210ENST00000540798 ATAD2BQ9ULI0 1458 aa22.58■■□□□ 1.21
RTN3-210ENST00000540798 BAZ1BQ9UIG0 1483 aaKnown RBP22.45■■□□□ 1.18
RTN3-210ENST00000540798 ABCC8Q09428 1581 aa22.44■■□□□ 1.18
RTN3-210ENST00000540798 HMGXB3Q12766 1538 aa22.34■■□□□ 1.17
RTN3-210ENST00000540798 NCAPD3P42695 1498 aa22.3■■□□□ 1.16
RTN3-210ENST00000540798 FAM9AQ8IZU1 332 aaPredicted RBP22.28■■□□□ 1.16
RTN3-210ENST00000540798 WRNQ14191 1432 aaPredicted RBP eCLIP22.18■■□□□ 1.14
RTN3-210ENST00000540798 SYNJ1O43426 1573 aa22.15■■□□□ 1.14
RTN3-210ENST00000540798 EEA1Q15075 1411 aa22.14■■□□□ 1.13
RTN3-210ENST00000540798 SOGA1O94964 1423 aa22.1■■□□□ 1.13
RTN3-210ENST00000540798 PCGF6Q9BYE7 350 aa22.08■■□□□ 1.13
RTN3-210ENST00000540798 TOP2BQ02880 1626 aa22.01■■□□□ 1.11
RTN3-210ENST00000540798 RUSC2Q8N2Y8 1516 aa22.01■■□□□ 1.11
RTN3-210ENST00000540798 BIVM-ERCC5R4GMW8 1640 aa22.01■■□□□ 1.11
RTN3-210ENST00000540798 TRIM26Q12899 539 aaPredicted RBP21.97■■□□□ 1.11
RTN3-210ENST00000540798 PRDM2Q13029 1718 aa21.97■■□□□ 1.11
RTN3-210ENST00000540798 CFTRP13569 1480 aa21.96■■□□□ 1.11
RTN3-210ENST00000540798 HRCP23327 699 aa21.93■■□□□ 1.1
RTN3-210ENST00000540798 CC2D2AQ9P2K1 1620 aa21.92■■□□□ 1.1
RTN3-210ENST00000540798 CSRNP3Q8WYN3 585 aa21.92■■□□□ 1.1
RTN3-210ENST00000540798 EHMT2Q96KQ7 1210 aa21.92■■□□□ 1.1
RTN3-210ENST00000540798 TNIKQ9UKE5 1360 aa21.9■■□□□ 1.1
RTN3-210ENST00000540798 KIF21BO75037 1637 aa21.9■■□□□ 1.1
RTN3-210ENST00000540798 GOLGA3Q08378 1498 aa21.86■■□□□ 1.09
RTN3-210ENST00000540798 CEP162Q5TB80 1403 aa21.82■■□□□ 1.08
RTN3-210ENST00000540798 CUX1P39880 1505 aa21.82■■□□□ 1.08
RTN3-210ENST00000540798 CEP164Q9UPV0 1460 aa21.81■■□□□ 1.08
RTN3-210ENST00000540798 DNAJC5BQ9UF47 199 aa21.75■■□□□ 1.07
RTN3-210ENST00000540798 CADPSQ9ULU8 1353 aa21.73■■□□□ 1.07
RTN3-210ENST00000540798 ERICH3Q5RHP9 1530 aa21.64■■□□□ 1.05
RTN3-210ENST00000540798 RAPGEF2Q9Y4G8 1499 aa21.63■■□□□ 1.05
RTN3-210ENST00000540798 UBTFP17480 764 aaKnown RBP21.62■■□□□ 1.05
RTN3-210ENST00000540798 PRXQ9BXM0 1461 aa21.61■■□□□ 1.05
RTN3-210ENST00000540798 KIF27Q86VH2 1401 aa21.55■■□□□ 1.04
RTN3-210ENST00000540798 CLIP1P30622 1438 aa21.51■■□□□ 1.03
RTN3-210ENST00000540798 FANCD2Q9BXW9 1451 aa21.5■■□□□ 1.03
RTN3-210ENST00000540798 LAMC3Q9Y6N6 1575 aa21.46■■□□□ 1.03
RTN3-210ENST00000540798 FGD5Q6ZNL6 1462 aa21.46■■□□□ 1.03
RTN3-210ENST00000540798 DNMBPQ6XZF7 1577 aa21.45■■□□□ 1.02
RTN3-210ENST00000540798 PPARGC1BQ86YN6 1023 aaKnown RBP21.44■■□□□ 1.02
RTN3-210ENST00000540798 VPS8Q8N3P4 1428 aa21.42■■□□□ 1.02
RTN3-210ENST00000540798 NESP48681 1621 aa21.41■■□□□ 1.02
RTN3-210ENST00000540798 CUX2O14529 1486 aa21.39■■□□□ 1.01
RTN3-210ENST00000540798 TOPBP1Q92547 1522 aa21.35■■□□□ 1.01
RTN3-210ENST00000540798 IGF1RP08069 1367 aa21.34■■□□□ 1.01
RTN3-210ENST00000540798 ZEB1P37275 1124 aaPredicted RBP21.34■■□□□ 1.01
RTN3-210ENST00000540798 ARAP1Q96P48 1450 aa21.31■■□□□ 1
RTN3-210ENST00000540798 ABCA10Q8WWZ4 1543 aa21.3■■□□□ 1
RTN3-210ENST00000540798 POLA1P09884 1462 aaPredicted RBP21.29■■□□□ 1
RTN3-210ENST00000540798 WDR97A6NE52 1622 aa21.28■■□□□ 1
RTN3-210ENST00000540798 URB2Q14146 1524 aaKnown RBP21.25■□□□□ 0.99
RTN3-210ENST00000540798 RAD54L2Q9Y4B4 1467 aa21.21■□□□□ 0.99
RTN3-210ENST00000540798 CARMIL1Q5VZK9 1371 aa21.21■□□□□ 0.99
RTN3-210ENST00000540798 KIF21AQ7Z4S6 1674 aa21.21■□□□□ 0.99
RTN3-210ENST00000540798 PDS5BQ9NTI5 1447 aa21.21■□□□□ 0.99
RTN3-210ENST00000540798 ARHGAP35Q9NRY4 1499 aa21.19■□□□□ 0.98
RTN3-210ENST00000540798 CUL7Q14999 1698 aa21.17■□□□□ 0.98
RTN3-210ENST00000540798 ABCA5Q8WWZ7 1642 aa21.13■□□□□ 0.97
RTN3-210ENST00000540798 TTBK1Q5TCY1 1321 aaPredicted RBP21.13■□□□□ 0.97
RTN3-210ENST00000540798 RANGAP1P46060 587 aaPredicted RBP21.09■□□□□ 0.97
RTN3-210ENST00000540798 APLP2Q06481 763 aa21.06■□□□□ 0.96
RTN3-210ENST00000540798 TARBP1Q13395 1621 aaKnown RBP21.05■□□□□ 0.96
RTN3-210ENST00000540798 CTTNBP2Q8WZ74 1663 aa21.05■□□□□ 0.96
RTN3-210ENST00000540798 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.02■□□□□ 0.96
RTN3-210ENST00000540798 MAP3K1Q13233 1512 aa21.01■□□□□ 0.95
RTN3-210ENST00000540798 EFCAB5A4FU69 1503 aa20.97■□□□□ 0.95
RTN3-210ENST00000540798 GAPVD1Q14C86 1478 aa20.97■□□□□ 0.95
RTN3-210ENST00000540798 CCER1Q8TC90 406 aaPredicted RBP20.96■□□□□ 0.95
RTN3-210ENST00000540798 MRC2Q9UBG0 1479 aa20.95■□□□□ 0.94
RTN3-210ENST00000540798 TIAM1Q13009 1591 aa20.93■□□□□ 0.94
RTN3-210ENST00000540798 KANK4Q5T7N3 995 aaPredicted RBP20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms