RNA–Protein interactions for RNA: ENST00000341421.7

TRAK1-202, Transcript of trafficking kinesin protein 1, humanhuman

TSL 1 (best) BASIC

Gene TRAK1, Length 4,620 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAK1-202ENST00000341421 NISCHQ9Y2I1 1504 aa22.17■■□□□ 1.14
TRAK1-202ENST00000341421 DCAF8L2P0C7V8 631 aa19.98■□□□□ 0.79
TRAK1-202ENST00000341421 SUPT5HO00267 1087 aaKnown RBP19.72■□□□□ 0.75
TRAK1-202ENST00000341421 SHROOM4Q9ULL8 1493 aa19.71■□□□□ 0.75
TRAK1-202ENST00000341421 PELP1Q8IZL8 1130 aaKnown RBP18.86■□□□□ 0.61
TRAK1-202ENST00000341421 HRCP23327 699 aa18.77■□□□□ 0.6
TRAK1-202ENST00000341421 PCGF6Q9BYE7 350 aa18.62■□□□□ 0.57
TRAK1-202ENST00000341421 ZCCHC6Q5VYS8 1495 aaKnown RBP18.6■□□□□ 0.57
TRAK1-202ENST00000341421 CCDC180Q9P1Z9 1646 aa18.6■□□□□ 0.57
TRAK1-202ENST00000341421 CHIC1Q5VXU3 224 aa18.56■□□□□ 0.56
TRAK1-202ENST00000341421 TRIM41Q8WV44 630 aa18.43■□□□□ 0.54
TRAK1-202ENST00000341421 MYT1Q01538 1121 aa18.37■□□□□ 0.53
TRAK1-202ENST00000341421 EHMT2Q96KQ7 1210 aa18.34■□□□□ 0.53
TRAK1-202ENST00000341421 FAM9AQ8IZU1 332 aaPredicted RBP18.33■□□□□ 0.52
TRAK1-202ENST00000341421 ZEB1P37275 1124 aaPredicted RBP18.27■□□□□ 0.52
TRAK1-202ENST00000341421 PPARGC1BQ86YN6 1023 aaKnown RBP18.25■□□□□ 0.51
TRAK1-202ENST00000341421 TRIM26Q12899 539 aaPredicted RBP18.17■□□□□ 0.5
TRAK1-202ENST00000341421 LOC105371045A0A1W2PR82 267 aa18.1■□□□□ 0.49
TRAK1-202ENST00000341421 DCAF1Q9Y4B6 1507 aa18.01■□□□□ 0.47
TRAK1-202ENST00000341421 APLP2Q06481 763 aa17.97■□□□□ 0.47
TRAK1-202ENST00000341421 ABCC9O60706 1549 aa17.91■□□□□ 0.46
TRAK1-202ENST00000341421 CENPBP07199 599 aaPredicted RBP17.87■□□□□ 0.45
TRAK1-202ENST00000341421 CCER1Q8TC90 406 aaPredicted RBP17.84■□□□□ 0.45
TRAK1-202ENST00000341421 UBTFP17480 764 aaKnown RBP17.81■□□□□ 0.44
TRAK1-202ENST00000341421 SCRIBQ14160 1630 aa17.8■□□□□ 0.44
TRAK1-202ENST00000341421 TTBK1Q5TCY1 1321 aaPredicted RBP17.74■□□□□ 0.43
TRAK1-202ENST00000341421 MYO15BQ96JP2 1530 aa17.73■□□□□ 0.43
TRAK1-202ENST00000341421 SCAF1Q9H7N4 1312 aaKnown RBP17.63■□□□□ 0.41
TRAK1-202ENST00000341421 RSF1Q96T23 1441 aaPredicted RBP17.63■□□□□ 0.41
TRAK1-202ENST00000341421 NACADO15069 1562 aa17.57■□□□□ 0.4
TRAK1-202ENST00000341421 ACIN1Q9UKV3 1341 aaKnown RBP17.49■□□□□ 0.39
TRAK1-202ENST00000341421 RANGAP1P46060 587 aaPredicted RBP17.49■□□□□ 0.39
TRAK1-202ENST00000341421 GTF3C3Q9Y5Q9 886 aa17.44■□□□□ 0.38
TRAK1-202ENST00000341421 RB1CC1Q8TDY2 1594 aa17.44■□□□□ 0.38
TRAK1-202ENST00000341421 PABPN1Q86U42 306 aaKnown RBP eCLIP17.39■□□□□ 0.37
TRAK1-202ENST00000341421 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.36■□□□□ 0.37
TRAK1-202ENST00000341421 CSRNP3Q8WYN3 585 aa17.33■□□□□ 0.37
TRAK1-202ENST00000341421 DIEXFQ68CQ4 756 aaKnown RBP17.32■□□□□ 0.36
TRAK1-202ENST00000341421 YTHDC1Q96MU7 727 aaKnown RBP17.29■□□□□ 0.36
TRAK1-202ENST00000341421 NEUROD1Q13562 356 aa17.26■□□□□ 0.35
TRAK1-202ENST00000341421 BAZ1AQ9NRL2 1556 aaPredicted RBP17.25■□□□□ 0.35
TRAK1-202ENST00000341421 HNRNPUL2Q1KMD3 747 aaKnown RBP17.24■□□□□ 0.35
TRAK1-202ENST00000341421 CECR2Q9BXF3 1484 aa17.22■□□□□ 0.35
TRAK1-202ENST00000341421 EEA1Q15075 1411 aa17.18■□□□□ 0.34
TRAK1-202ENST00000341421 ATP1B4Q9UN42 357 aaPredicted RBP17.16■□□□□ 0.34
TRAK1-202ENST00000341421 MROH2BQ7Z745 1585 aa17.13■□□□□ 0.33
TRAK1-202ENST00000341421 ZNF316A6NFI3 1004 aaPredicted RBP17.01■□□□□ 0.31
TRAK1-202ENST00000341421 CEP162Q5TB80 1403 aa17.01■□□□□ 0.31
TRAK1-202ENST00000341421 TNIKQ9UKE5 1360 aa17■□□□□ 0.31
TRAK1-202ENST00000341421 GOLGA3Q08378 1498 aa17■□□□□ 0.31
TRAK1-202ENST00000341421 ITGAEP38570 1179 aa16.98■□□□□ 0.31
TRAK1-202ENST00000341421 WRNQ14191 1432 aaPredicted RBP eCLIP16.97■□□□□ 0.31
TRAK1-202ENST00000341421 WIZO95785 1651 aa16.94■□□□□ 0.3
TRAK1-202ENST00000341421 ERICH6Q7L0X2 663 aa16.92■□□□□ 0.3
TRAK1-202ENST00000341421 TOP2AP11388 1531 aaKnown RBP16.92■□□□□ 0.3
TRAK1-202ENST00000341421 CLIP1P30622 1438 aa16.9■□□□□ 0.3
TRAK1-202ENST00000341421 CCDC88BA6NC98 1476 aa16.9■□□□□ 0.3
TRAK1-202ENST00000341421 CEP164Q9UPV0 1460 aa16.88■□□□□ 0.29
TRAK1-202ENST00000341421 BAZ1BQ9UIG0 1483 aaKnown RBP16.87■□□□□ 0.29
TRAK1-202ENST00000341421 NEFLP07196 543 aa16.84■□□□□ 0.29
TRAK1-202ENST00000341421 SOGA1O94964 1423 aa16.79■□□□□ 0.28
TRAK1-202ENST00000341421 ABCC8Q09428 1581 aa16.78■□□□□ 0.28
TRAK1-202ENST00000341421 SMARCA4P51532 1647 aa16.78■□□□□ 0.28
TRAK1-202ENST00000341421 FAM50AQ14320 339 aaKnown RBP16.77■□□□□ 0.28
TRAK1-202ENST00000341421 CLSPNQ9HAW4 1339 aa16.77■□□□□ 0.28
TRAK1-202ENST00000341421 SMARCA2P51531 1590 aa16.7■□□□□ 0.26
TRAK1-202ENST00000341421 KIF27Q86VH2 1401 aa16.66■□□□□ 0.26
TRAK1-202ENST00000341421 ANP32EQ9BTT0 268 aa16.62■□□□□ 0.25
TRAK1-202ENST00000341421 VPS8Q8N3P4 1428 aa16.62■□□□□ 0.25
TRAK1-202ENST00000341421 MIER1Q8N108 512 aa16.61■□□□□ 0.25
TRAK1-202ENST00000341421 BCL11AQ9H165 835 aa16.56■□□□□ 0.24
TRAK1-202ENST00000341421 P3H3Q8IVL6 736 aa16.55■□□□□ 0.24
TRAK1-202ENST00000341421 ATAD2BQ9ULI0 1458 aa16.54■□□□□ 0.24
TRAK1-202ENST00000341421 ANP32CO43423 234 aa16.5■□□□□ 0.23
TRAK1-202ENST00000341421 BCANQ96GW7 911 aa16.47■□□□□ 0.23
TRAK1-202ENST00000341421 TRIM52Q96A61 297 aa16.47■□□□□ 0.23
TRAK1-202ENST00000341421 RUSC2Q8N2Y8 1516 aa16.45■□□□□ 0.22
TRAK1-202ENST00000341421 CNGB1Q14028 1251 aaPredicted RBP16.43■□□□□ 0.22
TRAK1-202ENST00000341421 SUPT16HQ9Y5B9 1047 aaKnown RBP16.41■□□□□ 0.22
TRAK1-202ENST00000341421 POLR3GLQ9BT43 218 aa16.4■□□□□ 0.22
TRAK1-202ENST00000341421 TONSLQ96HA7 1378 aa16.39■□□□□ 0.21
TRAK1-202ENST00000341421 CCNB3Q8WWL7 1395 aa16.39■□□□□ 0.21
TRAK1-202ENST00000341421 RAPGEF2Q9Y4G8 1499 aa16.38■□□□□ 0.21
TRAK1-202ENST00000341421 FHAD1B1AJZ9 1412 aa16.38■□□□□ 0.21
TRAK1-202ENST00000341421 CUX2O14529 1486 aa16.36■□□□□ 0.21
TRAK1-202ENST00000341421 MTUS2Q5JR59 1369 aa16.36■□□□□ 0.21
TRAK1-202ENST00000341421 CARMIL1Q5VZK9 1371 aa16.35■□□□□ 0.21
TRAK1-202ENST00000341421 KIF21BO75037 1637 aa16.32■□□□□ 0.2
TRAK1-202ENST00000341421 CDK11AQ9UQ88 783 aaPredicted RBP16.32■□□□□ 0.2
TRAK1-202ENST00000341421 FKBP8Q14318 412 aa16.3■□□□□ 0.2
TRAK1-202ENST00000341421 TSHZ2Q9NRE2 1034 aa16.28■□□□□ 0.2
TRAK1-202ENST00000341421 DDX10Q13206 875 aaKnown RBP16.28■□□□□ 0.2
TRAK1-202ENST00000341421 KANK4Q5T7N3 995 aaPredicted RBP16.26■□□□□ 0.19
TRAK1-202ENST00000341421 TIMELESSQ9UNS1 1208 aa16.25■□□□□ 0.19
TRAK1-202ENST00000341421 MYT1LQ9UL68 1186 aa16.24■□□□□ 0.19
TRAK1-202ENST00000341421 CADPSQ9ULU8 1353 aa16.23■□□□□ 0.19
TRAK1-202ENST00000341421 SYNJ1O43426 1573 aa16.22■□□□□ 0.19
TRAK1-202ENST00000341421 NCAPD3P42695 1498 aa16.22■□□□□ 0.19
TRAK1-202ENST00000341421 SETD5Q9C0A6 1442 aa16.2■□□□□ 0.18
TRAK1-202ENST00000341421 ERICH3Q5RHP9 1530 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms