Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SSX4O60224 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.59■□□□□ 0.89
SSX4O60224 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SSX4O60224 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SSX4O60224 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SSX4O60224 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SSX4O60224 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SSX4O60224 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SSX4O60224 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SSX4O60224 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.58■□□□□ 0.89
SSX4O60224 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.58■□□□□ 0.89
SSX4O60224 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SSX4O60224 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.58■□□□□ 0.89
SSX4O60224 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.89
SSX4O60224 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SSX4O60224 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.58■□□□□ 0.88
SSX4O60224 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX4O60224 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SSX4O60224 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX4O60224 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX4O60224 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX4O60224 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SSX4O60224 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX4O60224 AC004812.2-201ENST00000611079 2094 ntBASIC20.57■□□□□ 0.88
SSX4O60224 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX4O60224 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX4O60224 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.56■□□□□ 0.88
SSX4O60224 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SSX4O60224 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX4O60224 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.56■□□□□ 0.88
SSX4O60224 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX4O60224 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SSX4O60224 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX4O60224 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.55■□□□□ 0.88
SSX4O60224 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.55■□□□□ 0.88
SSX4O60224 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.55■□□□□ 0.88
SSX4O60224 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SSX4O60224 AL031848.2-201ENST00000607670 837 ntBASIC20.55■□□□□ 0.88
SSX4O60224 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SSX4O60224 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SSX4O60224 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SSX4O60224 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SSX4O60224 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX4O60224 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SSX4O60224 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SSX4O60224 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX4O60224 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SSX4O60224 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX4O60224 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SSX4O60224 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.54■□□□□ 0.88
SSX4O60224 AC103724.3-201ENST00000564481 992 ntBASIC20.54■□□□□ 0.88
SSX4O60224 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
SSX4O60224 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX4O60224 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SSX4O60224 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.53■□□□□ 0.88
SSX4O60224 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SSX4O60224 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.53■□□□□ 0.88
SSX4O60224 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SSX4O60224 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SSX4O60224 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.53■□□□□ 0.88
SSX4O60224 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SSX4O60224 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SSX4O60224 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.52■□□□□ 0.88
SSX4O60224 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SSX4O60224 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SSX4O60224 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.52■□□□□ 0.88
SSX4O60224 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SSX4O60224 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SSX4O60224 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
SSX4O60224 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SSX4O60224 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SSX4O60224 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SSX4O60224 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
SSX4O60224 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SSX4O60224 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SSX4O60224 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SSX4O60224 AC131212.1-201ENST00000613771 668 ntBASIC20.51■□□□□ 0.87
SSX4O60224 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.51■□□□□ 0.87
SSX4O60224 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.51■□□□□ 0.87
SSX4O60224 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SSX4O60224 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SSX4O60224 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SSX4O60224 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.5■□□□□ 0.87
SSX4O60224 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.5■□□□□ 0.87
SSX4O60224 AC087393.1-201ENST00000582896 145 ntBASIC20.5■□□□□ 0.87
SSX4O60224 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.5■□□□□ 0.87
SSX4O60224 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.5■□□□□ 0.87
SSX4O60224 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SSX4O60224 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms