RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 NISCHQ9Y2I1 1504 aa47.52■■■■■ 5.2
NKX2-1-201ENST00000354822 CCDC180Q9P1Z9 1646 aa41.07■■■■■ 4.17
NKX2-1-201ENST00000354822 ZCCHC6Q5VYS8 1495 aaKnown RBP40.05■■■■■ 4
NKX2-1-201ENST00000354822 SHROOM4Q9ULL8 1493 aa39.55■■■■□ 3.92
NKX2-1-201ENST00000354822 DCAF1Q9Y4B6 1507 aa39.24■■■■□ 3.87
NKX2-1-201ENST00000354822 DCAF8L2P0C7V8 631 aa39.11■■■■□ 3.85
NKX2-1-201ENST00000354822 SUPT5HO00267 1087 aaKnown RBP38.71■■■■□ 3.79
NKX2-1-201ENST00000354822 MYO15BQ96JP2 1530 aa38.5■■■■□ 3.75
NKX2-1-201ENST00000354822 ABCC9O60706 1549 aa38.3■■■■□ 3.72
NKX2-1-201ENST00000354822 NACADO15069 1562 aa38.1■■■■□ 3.69
NKX2-1-201ENST00000354822 SCRIBQ14160 1630 aa37.95■■■■□ 3.67
NKX2-1-201ENST00000354822 CHIC1Q5VXU3 224 aa37.63■■■■□ 3.62
NKX2-1-201ENST00000354822 RB1CC1Q8TDY2 1594 aa37.61■■■■□ 3.61
NKX2-1-201ENST00000354822 RSF1Q96T23 1441 aaPredicted RBP37.18■■■■□ 3.54
NKX2-1-201ENST00000354822 UNC13AQ9UPW8 1703 aa36.95■■■■□ 3.51
NKX2-1-201ENST00000354822 CECR2Q9BXF3 1484 aa36.91■■■■□ 3.5
NKX2-1-201ENST00000354822 MROH2BQ7Z745 1585 aa36.77■■■■□ 3.48
NKX2-1-201ENST00000354822 BAZ1AQ9NRL2 1556 aaPredicted RBP36.62■■■■□ 3.45
NKX2-1-201ENST00000354822 WIZO95785 1651 aa36.53■■■■□ 3.44
NKX2-1-201ENST00000354822 BICRAQ9NZM4 1560 aa36.5■■■■□ 3.43
NKX2-1-201ENST00000354822 SMARCA4P51532 1647 aa36.39■■■■□ 3.42
NKX2-1-201ENST00000354822 LOC105371045A0A1W2PR82 267 aa36.3■■■■□ 3.4
NKX2-1-201ENST00000354822 TRIM41Q8WV44 630 aa36.29■■■■□ 3.4
NKX2-1-201ENST00000354822 PABPN1Q86U42 306 aaKnown RBP eCLIP36.28■■■■□ 3.4
NKX2-1-201ENST00000354822 TOP2AP11388 1531 aaKnown RBP36.12■■■■□ 3.37
NKX2-1-201ENST00000354822 PCGF6Q9BYE7 350 aa35.93■■■■□ 3.34
NKX2-1-201ENST00000354822 PEG3Q9GZU2 1588 aa35.88■■■■□ 3.33
NKX2-1-201ENST00000354822 HRCP23327 699 aa35.83■■■■□ 3.33
NKX2-1-201ENST00000354822 SMARCA2P51531 1590 aa35.82■■■■□ 3.33
NKX2-1-201ENST00000354822 EIF4G1Q04637 1599 aaKnown RBP35.81■■■■□ 3.32
NKX2-1-201ENST00000354822 CCDC88BA6NC98 1476 aa35.79■■■■□ 3.32
NKX2-1-201ENST00000354822 FAM9AQ8IZU1 332 aaPredicted RBP35.68■■■■□ 3.3
NKX2-1-201ENST00000354822 ATAD2BQ9ULI0 1458 aa35.61■■■■□ 3.29
NKX2-1-201ENST00000354822 TRIM26Q12899 539 aaPredicted RBP35.6■■■■□ 3.29
NKX2-1-201ENST00000354822 BAZ1BQ9UIG0 1483 aaKnown RBP35.46■■■■□ 3.27
NKX2-1-201ENST00000354822 ABCC8Q09428 1581 aa35.3■■■■□ 3.24
NKX2-1-201ENST00000354822 EHMT2Q96KQ7 1210 aa35.17■■■■□ 3.22
NKX2-1-201ENST00000354822 NCAPD3P42695 1498 aa35.17■■■■□ 3.22
NKX2-1-201ENST00000354822 HMGXB3Q12766 1538 aa35.17■■■■□ 3.22
NKX2-1-201ENST00000354822 EEA1Q15075 1411 aa35.08■■■■□ 3.21
NKX2-1-201ENST00000354822 WRNQ14191 1432 aaPredicted RBP eCLIP34.96■■■■□ 3.19
NKX2-1-201ENST00000354822 SOGA1O94964 1423 aa34.94■■■■□ 3.18
NKX2-1-201ENST00000354822 CSRNP3Q8WYN3 585 aa34.87■■■■□ 3.17
NKX2-1-201ENST00000354822 ZEB1P37275 1124 aaPredicted RBP34.82■■■■□ 3.16
NKX2-1-201ENST00000354822 TNIKQ9UKE5 1360 aa34.82■■■■□ 3.16
NKX2-1-201ENST00000354822 PPARGC1BQ86YN6 1023 aaKnown RBP34.81■■■■□ 3.16
NKX2-1-201ENST00000354822 SYNJ1O43426 1573 aa34.79■■■■□ 3.16
NKX2-1-201ENST00000354822 RUSC2Q8N2Y8 1516 aa34.72■■■■□ 3.15
NKX2-1-201ENST00000354822 CEP162Q5TB80 1403 aa34.7■■■■□ 3.14
NKX2-1-201ENST00000354822 GOLGA3Q08378 1498 aa34.65■■■■□ 3.14
NKX2-1-201ENST00000354822 CC2D2AQ9P2K1 1620 aa34.65■■■■□ 3.14
NKX2-1-201ENST00000354822 CFTRP13569 1480 aa34.59■■■■□ 3.13
NKX2-1-201ENST00000354822 UBTFP17480 764 aaKnown RBP34.58■■■■□ 3.13
NKX2-1-201ENST00000354822 TOP2BQ02880 1626 aa34.57■■■■□ 3.12
NKX2-1-201ENST00000354822 BIVM-ERCC5R4GMW8 1640 aa34.53■■■■□ 3.12
NKX2-1-201ENST00000354822 CEP164Q9UPV0 1460 aa34.53■■■■□ 3.12
NKX2-1-201ENST00000354822 KIF21BO75037 1637 aa34.5■■■■□ 3.11
NKX2-1-201ENST00000354822 PRDM2Q13029 1718 aa34.47■■■■□ 3.11
NKX2-1-201ENST00000354822 CADPSQ9ULU8 1353 aa34.33■■■■□ 3.09
NKX2-1-201ENST00000354822 CUX1P39880 1505 aa34.33■■■■□ 3.09
NKX2-1-201ENST00000354822 CLIP1P30622 1438 aa34.17■■■■□ 3.06
NKX2-1-201ENST00000354822 RAPGEF2Q9Y4G8 1499 aa34.15■■■■□ 3.06
NKX2-1-201ENST00000354822 ERICH3Q5RHP9 1530 aa34.06■■■■□ 3.04
NKX2-1-201ENST00000354822 PRXQ9BXM0 1461 aa34.03■■■■□ 3.04
NKX2-1-201ENST00000354822 VPS8Q8N3P4 1428 aa34.02■■■■□ 3.04
NKX2-1-201ENST00000354822 CCER1Q8TC90 406 aaPredicted RBP34.02■■■■□ 3.04
NKX2-1-201ENST00000354822 KIF27Q86VH2 1401 aa34■■■■□ 3.03
NKX2-1-201ENST00000354822 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.99■■■■□ 3.03
NKX2-1-201ENST00000354822 TTBK1Q5TCY1 1321 aaPredicted RBP33.98■■■■□ 3.03
NKX2-1-201ENST00000354822 FANCD2Q9BXW9 1451 aa33.97■■■■□ 3.03
NKX2-1-201ENST00000354822 APLP2Q06481 763 aa33.87■■■■□ 3.01
NKX2-1-201ENST00000354822 LAMC3Q9Y6N6 1575 aa33.85■■■■□ 3.01
NKX2-1-201ENST00000354822 NESP48681 1621 aa33.85■■■■□ 3.01
NKX2-1-201ENST00000354822 FGD5Q6ZNL6 1462 aa33.84■■■■□ 3.01
NKX2-1-201ENST00000354822 DNMBPQ6XZF7 1577 aa33.79■■■■□ 3
NKX2-1-201ENST00000354822 CUX2O14529 1486 aa33.77■■■■□ 3
NKX2-1-201ENST00000354822 TOPBP1Q92547 1522 aa33.69■■■□□ 2.98
NKX2-1-201ENST00000354822 RANGAP1P46060 587 aaPredicted RBP33.68■■■□□ 2.98
NKX2-1-201ENST00000354822 ARAP1Q96P48 1450 aa33.63■■■□□ 2.97
NKX2-1-201ENST00000354822 IGF1RP08069 1367 aa33.63■■■□□ 2.97
NKX2-1-201ENST00000354822 DNAJC5BQ9UF47 199 aa33.61■■■□□ 2.97
NKX2-1-201ENST00000354822 PDS5BQ9NTI5 1447 aa33.58■■■□□ 2.97
NKX2-1-201ENST00000354822 POLA1P09884 1462 aaPredicted RBP33.57■■■□□ 2.96
NKX2-1-201ENST00000354822 ABCA10Q8WWZ4 1543 aa33.54■■■□□ 2.96
NKX2-1-201ENST00000354822 URB2Q14146 1524 aaKnown RBP33.51■■■□□ 2.96
NKX2-1-201ENST00000354822 RAD54L2Q9Y4B4 1467 aa33.5■■■□□ 2.95
NKX2-1-201ENST00000354822 CARMIL1Q5VZK9 1371 aa33.48■■■□□ 2.95
NKX2-1-201ENST00000354822 HNRNPUL2Q1KMD3 747 aaKnown RBP33.46■■■□□ 2.95
NKX2-1-201ENST00000354822 KIF21AQ7Z4S6 1674 aa33.44■■■□□ 2.94
NKX2-1-201ENST00000354822 ARHGAP35Q9NRY4 1499 aa33.43■■■□□ 2.94
NKX2-1-201ENST00000354822 WDR97A6NE52 1622 aa33.38■■■□□ 2.93
NKX2-1-201ENST00000354822 CUL7Q14999 1698 aa33.29■■■□□ 2.92
NKX2-1-201ENST00000354822 KANK4Q5T7N3 995 aaPredicted RBP33.28■■■□□ 2.92
NKX2-1-201ENST00000354822 ABCA5Q8WWZ7 1642 aa33.21■■■□□ 2.91
NKX2-1-201ENST00000354822 RRBP1Q9P2E9 1410 aaKnown RBP33.21■■■□□ 2.91
NKX2-1-201ENST00000354822 MAP3K1Q13233 1512 aa33.2■■■□□ 2.9
NKX2-1-201ENST00000354822 DIEXFQ68CQ4 756 aaKnown RBP33.14■■■□□ 2.9
NKX2-1-201ENST00000354822 GAPVD1Q14C86 1478 aa33.12■■■□□ 2.89
NKX2-1-201ENST00000354822 MRC2Q9UBG0 1479 aa33.12■■■□□ 2.89
NKX2-1-201ENST00000354822 TARBP1Q13395 1621 aaKnown RBP33.12■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms