RNA–Protein interactions for RNA: ENST00000529189.5

LTBP3-212, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

TSL 2 BASIC

Gene LTBP3, Length 1,997 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-212ENST00000529189 NISCHQ9Y2I1 1504 aa52.91■■■■■ 6.06
LTBP3-212ENST00000529189 CCDC180Q9P1Z9 1646 aa46.44■■■■■ 5.02
LTBP3-212ENST00000529189 ABCC9O60706 1549 aa44.39■■■■■ 4.7
LTBP3-212ENST00000529189 ZCCHC6Q5VYS8 1495 aaKnown RBP44.35■■■■■ 4.69
LTBP3-212ENST00000529189 DCAF8L2P0C7V8 631 aa43.83■■■■■ 4.61
LTBP3-212ENST00000529189 DCAF1Q9Y4B6 1507 aa43.74■■■■■ 4.59
LTBP3-212ENST00000529189 MYO15BQ96JP2 1530 aa43.42■■■■■ 4.54
LTBP3-212ENST00000529189 NACADO15069 1562 aa43.35■■■■■ 4.53
LTBP3-212ENST00000529189 RB1CC1Q8TDY2 1594 aa43.13■■■■■ 4.49
LTBP3-212ENST00000529189 SHROOM4Q9ULL8 1493 aa42.76■■■■■ 4.44
LTBP3-212ENST00000529189 SCRIBQ14160 1630 aa42.63■■■■■ 4.42
LTBP3-212ENST00000529189 UNC13AQ9UPW8 1703 aa42.27■■■■■ 4.36
LTBP3-212ENST00000529189 BICRAQ9NZM4 1560 aa41.84■■■■■ 4.29
LTBP3-212ENST00000529189 PABPN1Q86U42 306 aaKnown RBP eCLIP41.72■■■■■ 4.271e-7■■■□□ 15.3
LTBP3-212ENST00000529189 CECR2Q9BXF3 1484 aa41.16■■■■■ 4.18
LTBP3-212ENST00000529189 BAZ1AQ9NRL2 1556 aaPredicted RBP40.9■■■■■ 4.14
LTBP3-212ENST00000529189 SUPT5HO00267 1087 aaKnown RBP40.88■■■■■ 4.14
LTBP3-212ENST00000529189 MROH2BQ7Z745 1585 aa40.86■■■■■ 4.13
LTBP3-212ENST00000529189 SMARCA4P51532 1647 aa40.82■■■■■ 4.12
LTBP3-212ENST00000529189 RSF1Q96T23 1441 aaPredicted RBP40.81■■■■■ 4.12
LTBP3-212ENST00000529189 EIF4G1Q04637 1599 aaKnown RBP40.63■■■■■ 4.1
LTBP3-212ENST00000529189 WIZO95785 1651 aa40.52■■■■■ 4.08
LTBP3-212ENST00000529189 PEG3Q9GZU2 1588 aa40.32■■■■■ 4.05
LTBP3-212ENST00000529189 ATAD2BQ9ULI0 1458 aa40.26■■■■■ 4.04
LTBP3-212ENST00000529189 SMARCA2P51531 1590 aa40.23■■■■■ 4.03
LTBP3-212ENST00000529189 CC2D2AQ9P2K1 1620 aa40.17■■■■■ 4.02
LTBP3-212ENST00000529189 TOP2AP11388 1531 aaKnown RBP40.08■■■■■ 4.01
LTBP3-212ENST00000529189 BAZ1BQ9UIG0 1483 aaKnown RBP40.01■■■■■ 4
LTBP3-212ENST00000529189 NCAPD3P42695 1498 aa39.99■■■■□ 3.99
LTBP3-212ENST00000529189 HMGXB3Q12766 1538 aa39.92■■■■□ 3.98
LTBP3-212ENST00000529189 CCDC88BA6NC98 1476 aa39.63■■■■□ 3.93
LTBP3-212ENST00000529189 DNAJC5BQ9UF47 199 aa39.63■■■■□ 3.93
LTBP3-212ENST00000529189 CHIC1Q5VXU3 224 aa39.34■■■■□ 3.89
LTBP3-212ENST00000529189 CFTRP13569 1480 aa38.96■■■■□ 3.83
LTBP3-212ENST00000529189 CADPSQ9ULU8 1353 aa38.92■■■■□ 3.82
LTBP3-212ENST00000529189 NESP48681 1621 aa38.8■■■■□ 3.8
LTBP3-212ENST00000529189 PRDM2Q13029 1718 aa38.78■■■■□ 3.8
LTBP3-212ENST00000529189 LAMC3Q9Y6N6 1575 aa38.75■■■■□ 3.79
LTBP3-212ENST00000529189 ABCC8Q09428 1581 aa38.65■■■■□ 3.78
LTBP3-212ENST00000529189 FANCD2Q9BXW9 1451 aa38.52■■■■□ 3.76
LTBP3-212ENST00000529189 WRNQ14191 1432 aaPredicted RBP eCLIP38.44■■■■□ 3.74
LTBP3-212ENST00000529189 PDS5BQ9NTI5 1447 aa38.44■■■■□ 3.74
LTBP3-212ENST00000529189 TRIM41Q8WV44 630 aa38.42■■■■□ 3.74
LTBP3-212ENST00000529189 KIF21AQ7Z4S6 1674 aa38.36■■■■□ 3.73
LTBP3-212ENST00000529189 CEP164Q9UPV0 1460 aa38.35■■■■□ 3.73
LTBP3-212ENST00000529189 SYNJ1O43426 1573 aa38.34■■■■□ 3.73
LTBP3-212ENST00000529189 CUX1P39880 1505 aa38.26■■■■□ 3.71
LTBP3-212ENST00000529189 TOP2BQ02880 1626 aa38.22■■■■□ 3.71
LTBP3-212ENST00000529189 BIVM-ERCC5R4GMW8 1640 aa38.2■■■■□ 3.71
LTBP3-212ENST00000529189 ERCC6Q03468 1493 aa38.12■■■■□ 3.69
LTBP3-212ENST00000529189 DNMBPQ6XZF7 1577 aa38.09■■■■□ 3.69
LTBP3-212ENST00000529189 URB2Q14146 1524 aaKnown RBP38.08■■■■□ 3.69
LTBP3-212ENST00000529189 TOPBP1Q92547 1522 aa38.05■■■■□ 3.68
LTBP3-212ENST00000529189 MRC2Q9UBG0 1479 aa38.02■■■■□ 3.68
LTBP3-212ENST00000529189 FGD5Q6ZNL6 1462 aa37.92■■■■□ 3.66
LTBP3-212ENST00000529189 THOC2Q8NI27 1593 aaKnown RBP37.88■■■■□ 3.66
LTBP3-212ENST00000529189 LOC105371045A0A1W2PR82 267 aa37.86■■■■□ 3.65
LTBP3-212ENST00000529189 WDR62O43379 1518 aa37.85■■■■□ 3.65
LTBP3-212ENST00000529189 POLA1P09884 1462 aaPredicted RBP37.82■■■■□ 3.65
LTBP3-212ENST00000529189 SOGA1O94964 1423 aa37.78■■■■□ 3.64
LTBP3-212ENST00000529189 FAM9AQ8IZU1 332 aaPredicted RBP37.73■■■■□ 3.63
LTBP3-212ENST00000529189 RAD54L2Q9Y4B4 1467 aa37.69■■■■□ 3.62
LTBP3-212ENST00000529189 RUSC2Q8N2Y8 1516 aa37.68■■■■□ 3.62
LTBP3-212ENST00000529189 CUX2O14529 1486 aa37.58■■■■□ 3.61
LTBP3-212ENST00000529189 EEA1Q15075 1411 aa37.56■■■■□ 3.6
LTBP3-212ENST00000529189 ABCA10Q8WWZ4 1543 aa37.56■■■■□ 3.6
LTBP3-212ENST00000529189 WDR97A6NE52 1622 aa37.54■■■■□ 3.6
LTBP3-212ENST00000529189 TARBP1Q13395 1621 aaKnown RBP37.54■■■■□ 3.6
LTBP3-212ENST00000529189 KIF27Q86VH2 1401 aa37.51■■■■□ 3.6
LTBP3-212ENST00000529189 IFT140Q96RY7 1462 aa37.45■■■■□ 3.59
LTBP3-212ENST00000529189 CSRNP3Q8WYN3 585 aa37.39■■■■□ 3.58
LTBP3-212ENST00000529189 TDRD9Q8NDG6 1382 aaKnown RBP37.35■■■■□ 3.57
LTBP3-212ENST00000529189 ABCA5Q8WWZ7 1642 aa37.34■■■■□ 3.57
LTBP3-212ENST00000529189 ZNF608Q9ULD9 1512 aaPredicted RBP37.29■■■■□ 3.56
LTBP3-212ENST00000529189 GAPVD1Q14C86 1478 aa37.25■■■■□ 3.55
LTBP3-212ENST00000529189 EHMT2Q96KQ7 1210 aa37.22■■■■□ 3.55
LTBP3-212ENST00000529189 AQRO60306 1485 aaKnown RBP eCLIP37.22■■■■□ 3.556e-7■■■■□ 25.1
LTBP3-212ENST00000529189 IGF1RP08069 1367 aa37.22■■■■□ 3.55
LTBP3-212ENST00000529189 EIF4G3O43432 1585 aaKnown RBP37.17■■■■□ 3.54
LTBP3-212ENST00000529189 KIF21BO75037 1637 aa37.16■■■■□ 3.54
LTBP3-212ENST00000529189 PBRM1Q86U86 1689 aa37.14■■■■□ 3.54
LTBP3-212ENST00000529189 PRXQ9BXM0 1461 aa37.12■■■■□ 3.53
LTBP3-212ENST00000529189 ERICH3Q5RHP9 1530 aa37.11■■■■□ 3.53
LTBP3-212ENST00000529189 GOLGA3Q08378 1498 aa37.05■■■■□ 3.52
LTBP3-212ENST00000529189 GRIN2BQ13224 1484 aa37.05■■■■□ 3.52
LTBP3-212ENST00000529189 RAPGEF2Q9Y4G8 1499 aa37.05■■■■□ 3.52
LTBP3-212ENST00000529189 CUL7Q14999 1698 aa37.04■■■■□ 3.52
LTBP3-212ENST00000529189 CARMIL1Q5VZK9 1371 aa37.02■■■■□ 3.52
LTBP3-212ENST00000529189 ADAMTS12P58397 1594 aa36.9■■■■□ 3.5
LTBP3-212ENST00000529189 SNAPC4Q5SXM2 1469 aa36.9■■■■□ 3.5
LTBP3-212ENST00000529189 UBTFP17480 764 aaKnown RBP36.87■■■■□ 3.49
LTBP3-212ENST00000529189 TNIKQ9UKE5 1360 aa36.86■■■■□ 3.49
LTBP3-212ENST00000529189 FHAD1B1AJZ9 1412 aa36.83■■■■□ 3.49
LTBP3-212ENST00000529189 MAGI1Q96QZ7 1491 aaPredicted RBP36.81■■■■□ 3.48
LTBP3-212ENST00000529189 CEP162Q5TB80 1403 aa36.71■■■■□ 3.47
LTBP3-212ENST00000529189 SYNJ2O15056 1496 aa36.67■■■■□ 3.46
LTBP3-212ENST00000529189 GRIN2AQ12879 1464 aa36.61■■■■□ 3.45
LTBP3-212ENST00000529189 PCGF6Q9BYE7 350 aa36.58■■■■□ 3.45
LTBP3-212ENST00000529189 CHMP7Q8WUX9 453 aaPredicted RBP36.57■■■■□ 3.45
LTBP3-212ENST00000529189 CTTNBP2Q8WZ74 1663 aa36.56■■■■□ 3.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms