Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 TARDBPP1-201ENST00000442013 1203 ntBASIC12.41□□□□□ -0.42
NKX2-1P43699 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
NKX2-1P43699 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 RPL13AP23-201ENST00000480739 586 ntBASIC12.41□□□□□ -0.42
NKX2-1P43699 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 IGHV3-62-201ENST00000520057 340 ntBASIC12.41□□□□□ -0.42
NKX2-1P43699 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
NKX2-1P43699 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC12.41□□□□□ -0.42
NKX2-1P43699 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC12.41□□□□□ -0.42
NKX2-1P43699 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC12.41□□□□□ -0.42
NKX2-1P43699 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.41□□□□□ -0.42
NKX2-1P43699 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC12.41□□□□□ -0.42
NKX2-1P43699 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC12.41□□□□□ -0.42
NKX2-1P43699 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
NKX2-1P43699 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
NKX2-1P43699 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC12.41□□□□□ -0.42
NKX2-1P43699 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.42
NKX2-1P43699 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
NKX2-1P43699 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
NKX2-1P43699 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC12.41□□□□□ -0.42
NKX2-1P43699 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.41□□□□□ -0.42
NKX2-1P43699 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC12.41□□□□□ -0.42
NKX2-1P43699 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
NKX2-1P43699 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC12.4□□□□□ -0.42
NKX2-1P43699 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
NKX2-1P43699 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 IL9RP2-201ENST00000423948 1312 ntBASIC12.4□□□□□ -0.42
NKX2-1P43699 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC12.4□□□□□ -0.42
NKX2-1P43699 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 AP3S2-216ENST00000617003 1561 ntBASIC12.4□□□□□ -0.42
NKX2-1P43699 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 KRT8P22-201ENST00000562317 1415 ntBASIC12.4□□□□□ -0.42
NKX2-1P43699 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC12.4□□□□□ -0.42
NKX2-1P43699 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 BEX3-201ENST00000361298 921 ntTSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 AL590627.1-203ENST00000421194 1026 ntBASIC12.4□□□□□ -0.42
NKX2-1P43699 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC12.4□□□□□ -0.42
NKX2-1P43699 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC12.4□□□□□ -0.42
NKX2-1P43699 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.4□□□□□ -0.42
NKX2-1P43699 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.4□□□□□ -0.42
NKX2-1P43699 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
NKX2-1P43699 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
NKX2-1P43699 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC12.4□□□□□ -0.42
NKX2-1P43699 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC12.4□□□□□ -0.42
NKX2-1P43699 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC12.4□□□□□ -0.42
NKX2-1P43699 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
NKX2-1P43699 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.43
NKX2-1P43699 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
NKX2-1P43699 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
NKX2-1P43699 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
NKX2-1P43699 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms